Wall clock time and date at job start Mon Mar 30 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.69960 * 123.90947 * 2 1 4 4 C 1.75871 * 93.19697 * 180.24688 * 3 2 1 5 5 C 1.40496 * 130.10969 * 179.80548 * 4 3 2 6 6 C 1.35728 * 120.83455 * 179.97438 * 5 4 3 7 7 C 1.41089 * 120.10363 * 0.02562 * 6 5 4 8 8 C 1.41246 * 120.12995 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99980 * 24.75346 * 8 7 6 10 10 C 1.39903 * 119.99940 * 204.76010 * 8 7 6 11 11 N 1.30867 * 120.00139 * 17.98270 * 10 8 7 12 12 Si 1.86800 * 119.99778 * 197.98593 * 10 8 7 13 13 H 1.48502 * 109.47159 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.46981 * 119.99617 * 12 10 8 15 15 H 1.48498 * 109.47253 * 239.99765 * 12 10 8 16 16 C 1.40088 * 119.74546 * 359.97438 * 7 6 5 17 17 C 1.39813 * 109.91141 * 359.80366 * 4 3 2 18 18 C 1.35344 * 123.91042 * 179.88198 * 2 1 3 19 19 C 1.41584 * 123.19348 * 359.95345 * 18 2 1 20 20 O 1.21419 * 119.99807 * 359.71363 * 19 18 2 21 21 H 1.09001 * 109.46955 * 270.12364 * 1 2 3 22 22 H 1.08999 * 109.47488 * 30.12205 * 1 2 3 23 23 H 1.09001 * 109.47310 * 150.12800 * 1 2 3 24 24 H 1.08000 * 119.58464 * 0.02562 * 5 4 3 25 25 H 1.07999 * 119.94712 * 179.97438 * 6 5 4 26 26 H 0.96992 * 119.99925 * 180.02562 * 11 10 8 27 27 H 1.07998 * 120.02852 * 180.02562 * 16 7 6 28 28 H 1.07997 * 120.00015 * 179.43953 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4552 1.4105 0.0000 4 6 3.9672 0.5123 -0.0076 5 6 5.2941 0.9739 -0.0148 6 6 6.3341 0.1016 -0.0194 7 6 6.0919 -1.2883 -0.0174 8 6 7.1737 -2.1965 -0.0227 9 1 8.1354 -1.8929 0.3637 10 6 6.9993 -3.4891 -0.5285 11 7 5.9794 -3.7564 -1.3038 12 14 8.2223 -4.8337 -0.0972 13 1 9.2774 -4.2778 0.7877 14 1 7.5180 -5.9370 0.6041 15 1 8.8440 -5.3548 -1.3410 16 6 4.7744 -1.7643 -0.0101 17 6 3.7052 -0.8610 -0.0054 18 6 2.2621 -1.1232 0.0023 19 6 1.7112 -2.4275 0.0060 20 8 0.5064 -2.5776 0.0124 21 1 -0.3633 0.0022 1.0277 22 1 -0.3634 0.8889 -0.5157 23 1 -0.3634 -0.8911 -0.5118 24 1 5.4892 2.0361 -0.0160 25 1 7.3485 0.4722 -0.0254 26 1 5.8584 -4.6527 -1.6542 27 1 4.5837 -2.8273 -0.0082 28 1 2.3627 -3.2888 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396370074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:01 Heat of formation + Delta-G solvation = -22.242342 kcal Electronic energy + Delta-G solvation = -14820.770315 eV Core-core repulsion = 12312.919877 eV Total energy + Delta-G solvation = -2507.850438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78132 -39.32628 -36.55526 -35.19336 -32.15591 -31.40701 -28.52850 -27.67953 -25.41452 -22.71718 -22.46203 -20.69142 -19.31329 -18.16619 -17.18258 -16.75280 -16.31647 -15.72551 -15.71046 -15.38542 -14.81327 -14.26523 -14.23060 -13.86911 -13.69629 -13.23291 -13.20065 -12.83274 -12.80185 -12.55646 -12.06734 -11.65068 -11.57940 -11.35641 -10.94412 -10.46625 -10.13147 -9.21183 -8.68225 -8.52110 -6.35463 -0.41716 0.68208 0.72951 0.99136 1.18387 1.41134 1.46406 1.55890 2.09489 2.20345 2.68021 3.63240 3.69043 3.76435 4.16789 4.34032 4.41928 4.64307 4.68358 4.78844 4.98972 5.03585 5.20234 5.24544 5.28564 5.56864 5.65954 5.82039 6.01303 6.20132 6.50005 6.62638 6.86259 6.90750 8.28033 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.007682 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.231823 B = 3643.902856 C = 4548.964883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.109 4.109 3 S 0.187 5.813 4 C -0.292 4.292 5 C -0.055 4.055 6 C -0.198 4.198 7 C 0.087 3.913 8 C -0.484 4.484 9 H 0.085 0.915 10 C 0.038 3.962 11 N -0.815 5.815 12 Si 0.981 3.019 13 H -0.256 1.256 14 H -0.266 1.266 15 H -0.267 1.267 16 C -0.188 4.188 17 C -0.026 4.026 18 C -0.251 4.251 19 C 0.405 3.595 20 O -0.501 6.501 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.291 0.709 27 H 0.109 0.891 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 4.762 1.842 6.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.229 4.229 3 S 0.454 5.546 4 C -0.406 4.406 5 C -0.076 4.076 6 C -0.219 4.219 7 C 0.084 3.916 8 C -0.513 4.513 9 H 0.103 0.897 10 C -0.179 4.179 11 N -0.440 5.440 12 Si 0.801 3.199 13 H -0.179 1.179 14 H -0.190 1.190 15 H -0.192 1.192 16 C -0.210 4.210 17 C -0.031 4.031 18 C -0.268 4.268 19 C 0.269 3.731 20 O -0.382 6.382 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.147 0.853 25 H 0.137 0.863 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.128 6.066 1.697 8.122 hybrid contribution 1.201 -2.289 -0.064 2.585 sum -3.927 3.778 1.633 5.688 Atomic orbital electron populations 1.20816 0.85362 1.04858 1.04281 1.24897 1.02544 0.97941 0.97483 1.81796 0.92972 1.05096 1.74718 1.22406 0.97967 0.96065 1.24125 1.20017 0.89470 0.99109 0.99029 1.21014 0.98148 0.93191 1.09510 1.17815 0.93073 0.92462 0.88284 1.19896 0.97954 0.96983 1.36485 0.89712 1.26755 0.97856 1.01521 0.91725 1.69888 1.28833 1.23284 1.22045 0.85172 0.78410 0.77088 0.79200 1.17892 1.19050 1.19183 1.20881 0.90894 0.97820 1.11407 1.18982 0.91587 0.93157 0.99340 1.19772 0.92833 0.96992 1.17172 1.22052 0.89438 0.91996 0.69596 1.90379 1.18651 1.89791 1.39422 0.88950 0.88943 0.89174 0.85296 0.86318 0.89869 0.87323 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.47 71.24 0.67 -1.97 15 2 C -0.11 -3.83 6.26 25.02 0.16 -3.67 15 3 S 0.19 6.16 22.89 -56.49 -1.29 4.87 15 4 C -0.29 -12.38 6.48 23.20 0.15 -12.23 15 5 C -0.05 -2.26 9.99 22.24 0.22 -2.04 15 6 C -0.20 -8.99 9.71 22.39 0.22 -8.77 15 7 C 0.09 4.46 5.56 -21.39 -0.12 4.34 15 8 C -0.48 -24.50 9.04 23.41 0.21 -24.29 15 9 H 0.08 4.07 7.91 -2.91 -0.02 4.05 15 10 C 0.04 1.81 5.12 85.24 0.44 2.24 15 11 N -0.82 -40.74 10.97 21.82 0.24 -40.50 15 12 Si 0.98 36.17 29.60 68.60 2.03 38.20 15 13 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 14 H -0.27 -9.54 7.11 99.48 0.71 -8.83 15 15 H -0.27 -9.50 7.11 99.48 0.71 -8.79 15 16 C -0.19 -9.60 8.50 23.14 0.20 -9.41 15 17 C -0.03 -1.21 6.02 -20.28 -0.12 -1.33 15 18 C -0.25 -10.37 5.82 -20.92 -0.12 -10.49 15 19 C 0.41 16.05 11.19 68.65 0.77 16.82 15 20 O -0.50 -19.94 14.56 -3.46 -0.05 -19.99 15 21 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.09 2.79 5.77 -2.39 -0.01 2.78 15 24 H 0.13 4.36 8.06 -2.91 -0.02 4.33 15 25 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 26 H 0.29 13.09 8.30 -92.71 -0.77 12.32 15 27 H 0.11 5.76 5.68 -2.91 -0.02 5.74 15 28 H 0.10 3.72 7.55 -2.91 -0.02 3.70 15 Total: -1.00 -57.01 260.12 4.79 -52.22 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.19 Total: 15.97 kcal Atomic # 6 Polarization: -53.45 SS G_CDS: 2.67 Total: -50.78 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.24 Total: -40.50 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -1.29 Total: 4.87 kcal Total: -57.01 4.79 -52.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396370074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.982 kcal (2) G-P(sol) polarization free energy of solvation -57.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds