Wall clock time and date at job start Mon Mar 30 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70024 * 124.05217 * 2 1 4 4 C 1.75829 * 93.09457 * 180.23967 * 3 2 1 5 5 C 1.39914 * 130.31990 * 179.82567 * 4 3 2 6 6 C 1.38022 * 121.47780 * 180.02562 * 5 4 3 7 7 C 1.37651 * 121.16361 * 359.95142 * 6 5 4 8 8 C 1.40437 * 119.92800 * 0.02660 * 7 6 5 9 9 C 1.40759 * 120.44108 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99971 * 141.03696 * 9 8 7 11 11 C 1.39997 * 120.00066 * 321.03222 * 9 8 7 12 12 N 1.30828 * 120.00155 * 351.35877 * 11 9 8 13 13 Si 1.86803 * 120.00280 * 171.35682 * 11 9 8 14 14 H 1.48505 * 109.46758 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47209 * 120.00026 * 13 11 9 16 16 H 1.48497 * 109.47071 * 240.00243 * 13 11 9 17 17 C 1.39179 * 109.98328 * 359.80552 * 4 3 2 18 18 C 1.35965 * 124.05417 * 179.87243 * 2 1 3 19 19 C 1.46149 * 123.20085 * 359.96271 * 18 2 1 20 20 O 1.21392 * 119.99942 * 354.27401 * 19 18 2 21 21 H 1.08999 * 109.47333 * 270.12493 * 1 2 3 22 22 H 1.09004 * 109.47011 * 30.12267 * 1 2 3 23 23 H 1.08998 * 109.47043 * 150.12504 * 1 2 3 24 24 H 1.08003 * 119.26231 * 359.97438 * 5 4 3 25 25 H 1.08007 * 119.41916 * 179.97438 * 6 5 4 26 26 H 1.08006 * 120.03787 * 179.97438 * 7 6 5 27 27 H 0.97002 * 120.00418 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.00657 * 174.54677 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4591 1.4087 0.0000 4 6 3.9669 0.5042 -0.0073 5 6 5.2920 0.9533 -0.0141 6 6 6.3524 0.0699 -0.0198 7 6 6.1457 -1.2910 -0.0179 8 6 4.8372 -1.8010 -0.0107 9 6 4.6134 -3.1907 -0.0082 10 1 3.8126 -3.6076 0.5844 11 6 5.4289 -4.0324 -0.7740 12 7 6.2859 -3.5207 -1.6198 13 14 5.2934 -5.8862 -0.5883 14 1 4.2567 -6.2076 0.4252 15 1 4.9139 -6.4879 -1.8918 16 1 6.6014 -6.4368 -0.1510 17 6 3.7020 -0.8621 -0.0052 18 6 2.2684 -1.1265 0.0025 19 6 1.7034 -2.4743 0.0063 20 8 0.5041 -2.6294 0.1122 21 1 -0.3634 0.0022 1.0276 22 1 -0.3633 0.8889 -0.5158 23 1 -0.3633 -0.8911 -0.5119 24 1 5.4895 2.0152 -0.0158 25 1 7.3622 0.4531 -0.0253 26 1 6.9889 -1.9659 -0.0228 27 1 6.8507 -4.1039 -2.1507 28 1 2.3531 -3.3326 -0.0807 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396370452.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:03 Heat of formation + Delta-G solvation = -7.749871 kcal Electronic energy + Delta-G solvation = -15033.694618 eV Core-core repulsion = 12526.472621 eV Total energy + Delta-G solvation = -2507.221997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.87140 -37.43210 -34.56401 -33.70267 -30.39307 -29.94927 -26.83282 -25.55566 -23.70798 -21.10472 -20.66288 -19.08610 -17.79363 -16.08463 -15.60378 -15.22300 -14.60414 -14.05157 -13.92081 -13.81401 -13.10549 -12.89325 -12.69752 -12.17212 -12.08567 -11.65678 -11.53189 -11.37896 -11.20488 -10.81152 -10.60089 -10.02717 -9.81105 -9.64327 -9.44908 -8.79203 -8.24294 -7.42874 -7.00817 -6.82810 -4.61446 1.32199 2.30654 2.48268 2.55610 2.78154 2.97177 3.00270 3.01959 3.76204 3.77440 4.39612 5.24428 5.32241 5.40938 5.73678 5.97075 5.99952 6.05154 6.25488 6.36893 6.48277 6.74315 6.78528 6.83641 6.96923 7.10162 7.44875 7.63983 7.75147 7.85915 8.16300 8.30393 8.52111 8.60544 9.96836 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.010087 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.113697 B = 2775.239656 C = 3936.409544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.180 4.180 3 S 0.091 5.909 4 C -0.107 4.107 5 C -0.209 4.209 6 C -0.069 4.069 7 C -0.172 4.172 8 C 0.157 3.843 9 C -0.462 4.462 10 H 0.089 0.911 11 C 0.076 3.924 12 N -0.786 5.786 13 Si 0.910 3.090 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.269 1.269 17 C -0.138 4.138 18 C -0.156 4.156 19 C 0.391 3.609 20 O -0.491 6.491 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.285 0.715 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 2.564 1.400 3.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 S 0.358 5.642 4 C -0.221 4.221 5 C -0.234 4.234 6 C -0.090 4.090 7 C -0.193 4.193 8 C 0.152 3.848 9 C -0.490 4.490 10 H 0.107 0.893 11 C -0.143 4.143 12 N -0.410 5.410 13 Si 0.733 3.267 14 H -0.180 1.180 15 H -0.196 1.196 16 H -0.194 1.194 17 C -0.144 4.144 18 C -0.171 4.171 19 C 0.252 3.748 20 O -0.369 6.369 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.096 0.904 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.242 3.950 1.273 5.267 hybrid contribution 0.627 -2.133 -0.146 2.228 sum -2.615 1.817 1.127 3.378 Atomic orbital electron populations 1.20444 0.88157 1.02952 1.02382 1.24033 1.00264 0.97073 1.08409 1.82268 0.96110 1.08172 1.77669 1.22189 0.96268 0.95687 1.07967 1.19612 0.89509 0.97590 1.16662 1.20497 0.96415 0.93909 0.98201 1.20979 0.96670 0.93434 1.08249 1.18292 0.88769 0.91632 0.86066 1.19580 1.13958 0.91166 1.24340 0.89330 1.25917 0.93296 1.01732 0.93399 1.69766 1.16661 1.38313 1.16278 0.86208 0.79677 0.81222 0.79559 1.18002 1.19585 1.19414 1.20075 0.91096 0.91930 1.11263 1.20619 0.92837 0.95309 1.08317 1.24241 0.89267 0.92422 0.68856 1.90380 1.19411 1.89452 1.37619 0.91288 0.92526 0.89127 0.88755 0.88336 0.86526 0.90373 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.46 36.01 0.34 -1.02 15 2 C -0.18 -3.59 6.29 -35.12 -0.22 -3.81 15 3 S 0.09 1.72 22.90 -107.50 -2.46 -0.74 15 4 C -0.11 -2.38 6.45 -38.61 -0.25 -2.63 15 5 C -0.21 -4.47 10.02 -39.03 -0.39 -4.86 15 6 C -0.07 -1.49 9.95 -39.88 -0.40 -1.89 15 7 C -0.17 -4.08 8.61 -38.97 -0.34 -4.42 15 8 C 0.16 3.86 5.59 -104.42 -0.58 3.28 15 9 C -0.46 -10.93 7.55 -37.97 -0.29 -11.21 15 10 H 0.09 1.98 5.70 -52.48 -0.30 1.68 15 11 C 0.08 1.73 5.25 -17.32 -0.09 1.64 15 12 N -0.79 -18.66 11.47 55.55 0.64 -18.03 15 13 Si 0.91 17.09 29.57 -169.99 -5.03 12.06 15 14 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 15 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 17 C -0.14 -3.28 6.20 -102.84 -0.64 -3.92 15 18 C -0.16 -3.44 5.97 -104.53 -0.62 -4.06 15 19 C 0.39 8.20 10.90 33.90 0.37 8.57 15 20 O -0.49 -10.47 14.83 5.46 0.08 -10.39 15 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.09 1.61 6.00 -51.93 -0.31 1.30 15 24 H 0.09 1.79 8.06 -52.48 -0.42 1.37 15 25 H 0.10 1.83 8.06 -52.48 -0.42 1.41 15 26 H 0.12 2.80 6.95 -52.48 -0.36 2.43 15 27 H 0.29 6.15 8.30 -40.82 -0.34 5.81 15 28 H 0.12 2.49 4.83 -52.49 -0.25 2.23 15 LS Contribution 256.51 15.07 3.87 3.87 Total: -1.00 -25.83 256.51 -8.06 -33.89 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.05 Total: 3.67 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.11 Total: -24.33 kcal Atomic # 7 Polarization: -18.66 SS G_CDS: 0.64 Total: -18.03 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.46 Total: -0.74 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.83 -8.06 -33.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396370452.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.142 kcal (2) G-P(sol) polarization free energy of solvation -25.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds