Wall clock time and date at job start Mon Mar 30 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70024 * 124.05217 * 2 1 4 4 C 1.75829 * 93.09457 * 180.23967 * 3 2 1 5 5 C 1.39914 * 130.31990 * 179.82567 * 4 3 2 6 6 C 1.38022 * 121.47780 * 180.02562 * 5 4 3 7 7 C 1.37651 * 121.16361 * 359.95142 * 6 5 4 8 8 C 1.40437 * 119.92800 * 0.02660 * 7 6 5 9 9 C 1.40759 * 120.44108 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99971 * 141.03696 * 9 8 7 11 11 C 1.39997 * 120.00066 * 321.03222 * 9 8 7 12 12 N 1.30828 * 120.00155 * 351.35877 * 11 9 8 13 13 Si 1.86803 * 120.00280 * 171.35682 * 11 9 8 14 14 H 1.48505 * 109.46758 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47209 * 120.00026 * 13 11 9 16 16 H 1.48497 * 109.47071 * 240.00243 * 13 11 9 17 17 C 1.39179 * 109.98328 * 359.80552 * 4 3 2 18 18 C 1.35965 * 124.05417 * 179.87243 * 2 1 3 19 19 C 1.46149 * 123.20085 * 359.96271 * 18 2 1 20 20 O 1.21392 * 119.99942 * 354.27401 * 19 18 2 21 21 H 1.08999 * 109.47333 * 270.12493 * 1 2 3 22 22 H 1.09004 * 109.47011 * 30.12267 * 1 2 3 23 23 H 1.08998 * 109.47043 * 150.12504 * 1 2 3 24 24 H 1.08003 * 119.26231 * 359.97438 * 5 4 3 25 25 H 1.08007 * 119.41916 * 179.97438 * 6 5 4 26 26 H 1.08006 * 120.03787 * 179.97438 * 7 6 5 27 27 H 0.97002 * 120.00418 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.00657 * 174.54677 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4591 1.4087 0.0000 4 6 3.9669 0.5042 -0.0073 5 6 5.2920 0.9533 -0.0141 6 6 6.3524 0.0699 -0.0198 7 6 6.1457 -1.2910 -0.0179 8 6 4.8372 -1.8010 -0.0107 9 6 4.6134 -3.1907 -0.0082 10 1 3.8126 -3.6076 0.5844 11 6 5.4289 -4.0324 -0.7740 12 7 6.2859 -3.5207 -1.6198 13 14 5.2934 -5.8862 -0.5883 14 1 4.2567 -6.2076 0.4252 15 1 4.9139 -6.4879 -1.8918 16 1 6.6014 -6.4368 -0.1510 17 6 3.7020 -0.8621 -0.0052 18 6 2.2684 -1.1265 0.0025 19 6 1.7034 -2.4743 0.0063 20 8 0.5041 -2.6294 0.1122 21 1 -0.3634 0.0022 1.0276 22 1 -0.3633 0.8889 -0.5158 23 1 -0.3633 -0.8911 -0.5119 24 1 5.4895 2.0152 -0.0158 25 1 7.3622 0.4531 -0.0253 26 1 6.9889 -1.9659 -0.0228 27 1 6.8507 -4.1039 -2.1507 28 1 2.3531 -3.3326 -0.0807 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396370452.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:03 Heat of formation + Delta-G solvation = -19.779818 kcal Electronic energy + Delta-G solvation = -15034.216275 eV Core-core repulsion = 12526.472621 eV Total energy + Delta-G solvation = -2507.743655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51799 -39.11081 -36.21650 -35.37876 -31.96455 -31.66628 -28.44508 -27.26967 -25.31042 -22.81384 -22.33606 -20.72876 -19.48765 -17.74782 -17.26543 -16.83278 -16.22096 -15.66678 -15.53316 -15.46019 -14.73749 -14.49480 -14.23770 -13.78683 -13.59245 -13.23816 -13.08947 -12.97449 -12.78804 -12.42371 -12.11189 -11.68765 -11.46629 -11.31669 -11.12097 -10.42283 -9.91895 -9.10793 -8.69627 -8.47693 -6.38465 -0.30591 0.71341 0.74373 0.87236 1.13293 1.42554 1.48239 1.55661 2.09983 2.19802 2.69058 3.49921 3.73245 3.84765 4.26669 4.39489 4.48660 4.66017 4.67382 4.75545 5.00704 5.03753 5.13697 5.23989 5.28331 5.40566 5.73244 5.91952 6.02230 6.12261 6.49315 6.59062 6.78808 6.86278 8.30801 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.010087 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.113697 B = 2775.239656 C = 3936.409544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.172 4.172 3 S 0.166 5.834 4 C -0.141 4.141 5 C -0.208 4.208 6 C -0.074 4.074 7 C -0.194 4.194 8 C 0.127 3.873 9 C -0.486 4.486 10 H 0.092 0.908 11 C 0.041 3.959 12 N -0.822 5.822 13 Si 0.975 3.025 14 H -0.253 1.253 15 H -0.268 1.268 16 H -0.264 1.264 17 C -0.156 4.156 18 C -0.193 4.193 19 C 0.395 3.605 20 O -0.498 6.498 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.103 0.897 27 H 0.291 0.709 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 3.638 1.572 5.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.291 4.291 3 S 0.434 5.566 4 C -0.256 4.256 5 C -0.233 4.233 6 C -0.095 4.095 7 C -0.215 4.215 8 C 0.122 3.878 9 C -0.515 4.515 10 H 0.110 0.890 11 C -0.175 4.175 12 N -0.447 5.447 13 Si 0.795 3.205 14 H -0.176 1.176 15 H -0.193 1.193 16 H -0.188 1.188 17 C -0.162 4.162 18 C -0.208 4.208 19 C 0.257 3.743 20 O -0.377 6.377 21 H 0.102 0.898 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.317 5.045 1.451 6.796 hybrid contribution 0.878 -2.255 -0.190 2.427 sum -3.439 2.790 1.261 4.604 Atomic orbital electron populations 1.20558 0.85773 1.03981 1.03607 1.24657 1.02138 0.97301 1.04981 1.81929 0.92935 1.05804 1.75960 1.22659 0.98419 0.96232 1.08275 1.19972 0.89187 0.98918 1.15197 1.20799 0.98125 0.93178 0.97390 1.20987 0.96195 0.94400 1.09928 1.18637 0.89559 0.92557 0.87027 1.19784 1.14925 0.91480 1.25284 0.89048 1.26664 0.92603 1.05644 0.92608 1.69820 1.17691 1.39925 1.17250 0.85243 0.79760 0.75989 0.79474 1.17650 1.19270 1.18825 1.20354 0.91828 0.92726 1.11293 1.20692 0.92503 0.96372 1.11242 1.24167 0.89125 0.92452 0.68579 1.90366 1.19437 1.89529 1.38374 0.89755 0.89509 0.90092 0.86008 0.85624 0.87927 0.89834 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.47 9.46 71.24 0.67 -1.79 15 2 C -0.17 -6.49 6.29 25.16 0.16 -6.33 15 3 S 0.17 5.79 22.90 -56.49 -1.29 4.49 15 4 C -0.14 -6.14 6.45 22.90 0.15 -5.99 15 5 C -0.21 -8.61 10.02 22.62 0.23 -8.39 15 6 C -0.07 -3.18 9.95 22.08 0.22 -2.96 15 7 C -0.19 -9.45 8.61 22.67 0.20 -9.25 15 8 C 0.13 6.40 5.59 -19.74 -0.11 6.29 15 9 C -0.49 -23.74 7.55 23.31 0.18 -23.56 15 10 H 0.09 4.23 5.70 -2.91 -0.02 4.22 15 11 C 0.04 1.90 5.25 85.27 0.45 2.35 15 12 N -0.82 -40.16 11.47 21.84 0.25 -39.91 15 13 Si 0.97 35.44 29.57 68.60 2.03 37.47 15 14 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 15 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 16 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 17 C -0.16 -7.47 6.20 -18.71 -0.12 -7.58 15 18 C -0.19 -8.42 5.97 -19.80 -0.12 -8.54 15 19 C 0.39 16.61 10.90 69.88 0.76 17.37 15 20 O -0.50 -20.96 14.83 -3.38 -0.05 -21.01 15 21 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.09 2.13 8.14 -2.38 -0.02 2.11 15 23 H 0.08 2.70 6.00 -2.39 -0.01 2.68 15 24 H 0.12 4.27 8.06 -2.91 -0.02 4.24 15 25 H 0.13 4.53 8.06 -2.91 -0.02 4.50 15 26 H 0.10 5.16 6.95 -2.91 -0.02 5.14 15 27 H 0.29 12.87 8.30 -92.71 -0.77 12.10 15 28 H 0.12 5.11 4.83 -2.91 -0.01 5.10 15 Total: -1.00 -55.31 256.51 4.80 -50.51 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.20 Total: 16.82 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 2.66 Total: -48.38 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.25 Total: -39.91 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.29 Total: 4.49 kcal Total: -55.31 4.80 -50.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396370452.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.729 kcal (2) G-P(sol) polarization free energy of solvation -55.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds