Wall clock time and date at job start Mon Mar 30 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38043 * 119.41451 * 2 1 4 4 C 1.39857 * 121.50337 * 180.25439 * 3 2 1 5 5 S 1.76051 * 130.35392 * 180.32246 * 4 3 2 6 6 C 1.75503 * 91.62962 * 179.53732 * 5 4 3 7 7 C 1.41700 * 124.84089 * 179.81077 * 6 5 4 8 8 O 1.21412 * 119.99319 * 0.02562 * 7 6 5 9 9 C 1.35926 * 110.32242 * 359.81505 * 6 5 4 10 10 C 1.39072 * 115.32320 * 359.97438 * 9 6 5 11 11 C 1.48151 * 128.94296 * 180.02562 * 10 9 6 12 12 C 1.40328 * 120.40674 * 359.97438 * 11 10 9 13 13 H 1.08000 * 120.00109 * 334.25920 * 12 11 10 14 14 C 1.40280 * 119.99966 * 154.25945 * 12 11 10 15 15 N 1.30656 * 119.99817 * 343.34330 * 14 12 11 16 16 Si 1.86799 * 120.00086 * 163.34560 * 14 12 11 17 17 H 1.48505 * 109.47073 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47185 * 119.99779 * 16 14 12 19 19 H 1.48497 * 109.47291 * 239.99950 * 16 14 12 20 20 C 1.37694 * 119.41533 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.47458 * 89.99699 * 1 2 3 22 22 H 1.08996 * 109.47077 * 209.99800 * 1 2 3 23 23 H 1.08998 * 109.47026 * 330.00153 * 1 2 3 24 24 H 1.07994 * 119.25186 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.00294 * 180.02562 * 7 6 5 26 26 H 1.07998 * 122.33963 * 179.97438 * 9 6 5 27 27 H 0.97007 * 119.99942 * 180.02562 * 15 14 12 28 28 H 1.08009 * 119.91905 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.2025 0.0000 4 6 3.5826 1.2535 -0.0053 5 16 4.6729 2.6357 0.0011 6 6 6.0812 1.5884 0.0013 7 6 7.4248 2.0385 0.0018 8 8 7.6663 3.2284 0.0025 9 6 5.6994 0.2839 0.0009 10 6 4.3258 0.0661 0.0009 11 6 3.5865 -1.2178 0.0011 12 6 4.2809 -2.4372 0.0007 13 1 5.2801 -2.4895 -0.4059 14 6 3.6773 -3.5883 0.5284 15 7 2.6300 -3.4804 1.3021 16 14 4.3708 -5.2752 0.1250 17 1 5.5508 -5.1256 -0.7641 18 1 4.7805 -5.9551 1.3802 19 1 3.3330 -6.0860 -0.5611 20 6 2.1833 -1.1994 0.0005 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6234 2.1249 -0.0004 25 1 8.2340 1.3233 0.0015 26 1 6.4128 -0.5269 0.0006 27 1 2.2127 -4.2764 1.6673 28 1 1.6324 -2.1285 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396370464.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:01 Heat of formation + Delta-G solvation = -27.599419 kcal Electronic energy + Delta-G solvation = -14650.403225 eV Core-core repulsion = 12142.320486 eV Total energy + Delta-G solvation = -2508.082738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13080 -39.54107 -36.43583 -35.92224 -32.24241 -31.47331 -28.08158 -27.60626 -24.41614 -23.88843 -21.76528 -20.89317 -19.30500 -17.96008 -17.20369 -16.89168 -16.42035 -15.65146 -15.32668 -15.19220 -14.92217 -14.48636 -14.28035 -13.60749 -13.43669 -13.41210 -13.25545 -12.82600 -12.70032 -12.14637 -12.09472 -11.61103 -11.46210 -11.32373 -11.10293 -10.74833 -10.14463 -9.10045 -8.91738 -8.56848 -6.46623 -0.52159 0.83409 0.88664 1.18470 1.36254 1.41350 1.51649 1.57966 2.12010 2.20558 2.51678 3.45688 3.79898 4.24995 4.35369 4.39746 4.56796 4.74071 4.82606 4.90002 4.95824 5.00134 5.11476 5.22764 5.28330 5.41037 5.80172 5.83974 5.99357 6.08309 6.42022 6.56411 6.66578 6.75647 7.98588 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.008454 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.703261 B = 3311.371173 C = 4567.319689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.023 4.023 3 C -0.250 4.250 4 C -0.067 4.067 5 S 0.040 5.960 6 C -0.389 4.389 7 C 0.416 3.584 8 O -0.538 6.538 9 C 0.032 3.968 10 C -0.245 4.245 11 C 0.131 3.869 12 C -0.423 4.423 13 H 0.102 0.898 14 C 0.036 3.964 15 N -0.774 5.774 16 Si 0.993 3.007 17 H -0.249 1.249 18 H -0.263 1.263 19 H -0.261 1.261 20 C -0.217 4.217 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.148 0.852 26 H 0.160 0.840 27 H 0.304 0.696 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -3.846 -1.518 4.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.026 4.026 3 C -0.277 4.277 4 C -0.183 4.183 5 S 0.304 5.696 6 C -0.504 4.504 7 C 0.283 3.717 8 O -0.421 6.421 9 C 0.001 3.999 10 C -0.250 4.250 11 C 0.125 3.875 12 C -0.449 4.449 13 H 0.120 0.880 14 C -0.187 4.187 15 N -0.395 5.395 16 Si 0.812 3.188 17 H -0.172 1.172 18 H -0.187 1.187 19 H -0.186 1.186 20 C -0.239 4.239 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.127 0.873 25 H 0.164 0.836 26 H 0.178 0.822 27 H 0.116 0.884 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.007 -1.762 -1.347 2.218 hybrid contribution 0.063 -1.990 0.075 1.992 sum 0.070 -3.752 -1.272 3.962 Atomic orbital electron populations 1.20775 0.90024 1.02635 1.02556 1.19803 0.96626 0.92284 0.93912 1.19755 0.90305 0.97343 1.20288 1.22998 0.98126 0.95765 1.01442 1.83607 0.96552 1.08546 1.80940 1.23694 0.99502 0.96825 1.30408 1.22250 0.89731 0.90672 0.69063 1.90494 1.87899 1.22146 1.41513 1.20654 0.94964 0.95404 0.88888 1.19390 0.92973 0.93368 1.19261 1.18884 0.92363 0.90244 0.85995 1.20230 1.02602 0.92462 1.29558 0.87970 1.27103 0.94122 1.05758 0.91711 1.69770 1.16505 1.35056 1.18196 0.84961 0.79779 0.74445 0.79643 1.17243 1.18709 1.18554 1.21030 0.93669 0.96737 1.12419 0.90343 0.91609 0.90986 0.87346 0.83585 0.82230 0.88440 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.38 9.98 71.24 0.71 -2.67 15 2 C -0.02 -0.98 5.85 -20.04 -0.12 -1.10 15 3 C -0.25 -11.07 9.64 22.62 0.22 -10.86 15 4 C -0.07 -3.15 6.49 23.11 0.15 -3.00 15 5 S 0.04 1.73 22.94 -56.49 -1.30 0.43 15 6 C -0.39 -15.64 6.19 22.59 0.14 -15.50 15 7 C 0.42 14.51 11.36 68.68 0.78 15.29 15 8 O -0.54 -22.50 17.61 -3.44 -0.06 -22.56 15 9 C 0.03 1.28 9.68 21.93 0.21 1.50 15 10 C -0.25 -11.52 6.00 -20.00 -0.12 -11.64 15 11 C 0.13 6.31 5.75 -19.62 -0.11 6.20 15 12 C -0.42 -18.85 8.81 23.28 0.21 -18.64 15 13 H 0.10 4.19 7.51 -2.91 -0.02 4.17 15 14 C 0.04 1.46 5.15 85.36 0.44 1.90 15 15 N -0.77 -33.39 10.96 21.88 0.24 -33.15 15 16 Si 0.99 30.30 29.59 68.60 2.03 32.33 15 17 H -0.25 -7.40 7.11 99.48 0.71 -6.69 15 18 H -0.26 -7.77 7.11 99.48 0.71 -7.06 15 19 H -0.26 -7.75 7.11 99.48 0.71 -7.04 15 20 C -0.22 -10.17 8.27 22.65 0.19 -9.98 15 21 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.06 2.08 8.07 -2.39 -0.02 2.06 15 23 H 0.07 2.10 8.07 -2.39 -0.02 2.08 15 24 H 0.11 4.36 8.06 -2.91 -0.02 4.34 15 25 H 0.15 3.53 8.06 -2.91 -0.02 3.51 15 26 H 0.16 5.40 7.71 -2.91 -0.02 5.37 15 27 H 0.30 11.47 8.29 -92.70 -0.77 10.70 15 28 H 0.12 5.57 6.19 -2.91 -0.02 5.55 15 Total: -1.00 -56.99 265.70 4.79 -52.20 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.18 Total: 19.24 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 2.69 Total: -48.49 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.24 Total: -33.15 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 30.30 SS G_CDS: 2.03 Total: 32.33 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.30 Total: 0.43 kcal Total: -56.99 4.79 -52.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396370464.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.600 kcal (2) G-P(sol) polarization free energy of solvation -56.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds