Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37379 * 122.45792 * 2 1 4 4 C 1.39685 * 124.89420 * 0.04515 * 3 2 1 5 5 H 1.08000 * 119.99488 * 0.02562 * 4 3 2 6 6 C 1.40440 * 119.99972 * 179.97438 * 4 3 2 7 7 N 1.30602 * 119.99967 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00059 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46845 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47506 * 119.99762 * 8 6 4 11 11 H 1.48501 * 109.46952 * 240.00085 * 8 6 4 12 12 S 1.75491 * 110.21683 * 180.02562 * 3 2 1 13 13 C 1.76022 * 91.72923 * 0.02562 * 12 3 2 14 14 C 1.39534 * 130.26520 * 179.97438 * 13 12 3 15 15 C 1.37788 * 121.40014 * 179.97438 * 14 13 12 16 16 C 1.38245 * 121.12885 * 359.97438 * 15 14 13 17 17 C 1.39136 * 120.24946 * 0.29361 * 16 15 14 18 18 C 1.46433 * 120.35256 * 179.72356 * 17 16 15 19 19 O 1.21370 * 119.99834 * 354.53137 * 18 17 16 20 20 C 1.38908 * 122.46211 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.46744 * 256.06282 * 1 2 3 22 22 H 1.09000 * 109.47033 * 16.05855 * 1 2 3 23 23 H 1.08998 * 109.47173 * 136.06073 * 1 2 3 24 24 H 0.96995 * 119.99615 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.29899 * 359.97438 * 14 13 12 26 26 H 1.07997 * 119.42917 * 180.02562 * 15 14 13 27 27 H 1.07995 * 119.87330 * 180.02562 * 16 15 14 28 28 H 1.07998 * 120.00578 * 174.52750 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2444 1.1592 0.0000 4 6 1.7065 2.4483 0.0009 5 1 0.6354 2.5864 0.0021 6 6 2.5586 3.5647 0.0014 7 7 3.8538 3.3976 0.0014 8 14 1.8393 5.2887 0.0033 9 1 0.3565 5.2063 0.0035 10 1 2.2953 6.0140 1.2161 11 1 2.2940 6.0161 -1.2089 12 16 3.9594 0.7871 -0.0007 13 6 3.6382 -0.9436 -0.0018 14 6 4.5206 -2.0245 -0.0033 15 6 4.0634 -3.3244 -0.0034 16 6 2.7099 -3.6059 -0.0016 17 6 1.7789 -2.5720 -0.0057 18 6 0.3448 -2.8677 -0.0098 19 8 -0.0380 -4.0151 -0.1099 20 6 2.2527 -1.1720 -0.0005 21 1 -0.3633 -0.2475 0.9974 22 1 -0.3633 0.9876 -0.2843 23 1 -0.3633 -0.7400 -0.7131 24 1 4.4423 4.1686 0.0014 25 1 5.5844 -1.8384 -0.0043 26 1 4.7747 -4.1370 -0.0041 27 1 2.3740 -4.6323 -0.0013 28 1 -0.3725 -2.0648 0.0762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396371257.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = -19.404157 kcal Electronic energy + Delta-G solvation = -14835.427383 eV Core-core repulsion = 12327.700018 eV Total energy + Delta-G solvation = -2507.727365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.78752 -37.21776 -35.48224 -33.74595 -30.30538 -29.38737 -27.93590 -25.64148 -23.01009 -21.93040 -20.25984 -18.83461 -17.60114 -16.29134 -15.79420 -15.27285 -14.66069 -14.07293 -13.64825 -13.54142 -13.47438 -12.77885 -12.69621 -12.03355 -11.90739 -11.83198 -11.61232 -11.55767 -10.92994 -10.69969 -10.46238 -10.32263 -9.98795 -9.48846 -9.33123 -8.69728 -8.40538 -7.56906 -7.45805 -6.54013 -4.88866 1.36620 2.15955 2.67050 2.70157 2.78554 3.08314 3.33134 3.37031 3.38818 3.63548 4.44647 4.89097 5.24280 5.68189 5.84109 6.01448 6.18355 6.21639 6.38494 6.44863 6.56176 6.62069 6.75917 6.89961 7.01956 7.11171 7.35336 7.37886 7.47928 7.68332 7.85612 8.07213 8.16022 8.32730 9.34179 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.007747 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.002259 B = 3613.239738 C = 4453.683448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.338 4.338 3 C 0.063 3.937 4 C -0.355 4.355 5 H 0.108 0.892 6 C 0.050 3.950 7 N -0.756 5.756 8 Si 0.941 3.059 9 H -0.252 1.252 10 H -0.265 1.265 11 H -0.265 1.265 12 S 0.136 5.864 13 C -0.283 4.283 14 C -0.011 4.011 15 C -0.229 4.229 16 C -0.024 4.024 17 C -0.254 4.254 18 C 0.370 3.630 19 O -0.511 6.511 20 C 0.070 3.930 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.306 0.694 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 2.516 0.222 2.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.344 4.344 3 C -0.058 4.058 4 C -0.388 4.388 5 H 0.126 0.874 6 C -0.175 4.175 7 N -0.380 5.380 8 Si 0.763 3.237 9 H -0.175 1.175 10 H -0.189 1.189 11 H -0.190 1.190 12 S 0.397 5.603 13 C -0.397 4.397 14 C -0.033 4.033 15 C -0.249 4.249 16 C -0.045 4.045 17 C -0.257 4.257 18 C 0.237 3.763 19 O -0.391 6.391 20 C 0.062 3.938 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.492 2.918 0.172 3.282 hybrid contribution -1.173 -0.063 0.015 1.175 sum 0.319 2.855 0.187 2.879 Atomic orbital electron populations 1.20199 0.92356 1.00354 0.98816 1.18218 0.95105 0.90076 1.31008 1.21416 0.94741 0.95771 0.93830 1.19630 0.96246 0.88487 1.34481 0.87377 1.26504 0.94491 1.04177 0.92320 1.68608 1.04365 1.35454 1.29611 0.85657 0.80810 0.77893 0.79370 1.17518 1.18945 1.18952 1.84851 1.05791 0.90538 1.79076 1.23570 0.96687 1.01758 1.17710 1.20313 0.97302 0.91339 0.94352 1.20291 0.95031 0.95514 1.14107 1.20894 0.92755 0.97626 0.93188 1.21252 0.94782 0.92007 1.17657 1.24301 0.91197 0.91018 0.69829 1.90414 1.83101 1.25963 1.39640 1.18718 0.91490 0.91346 0.92222 0.94357 0.92837 0.93863 0.88051 0.87883 0.87524 0.86960 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.15 8.26 36.01 0.30 -0.85 15 2 C -0.34 -7.82 5.93 -104.68 -0.62 -8.44 15 3 C 0.06 1.49 6.12 -39.35 -0.24 1.25 15 4 C -0.36 -7.85 8.86 -38.21 -0.34 -8.19 15 5 H 0.11 2.23 6.40 -52.49 -0.34 1.89 15 6 C 0.05 1.01 5.50 -17.25 -0.09 0.92 15 7 N -0.76 -15.99 10.58 55.57 0.59 -15.40 15 8 Si 0.94 15.14 29.56 -169.99 -5.03 10.11 15 9 H -0.25 -4.00 7.11 56.52 0.40 -3.60 15 10 H -0.26 -4.22 7.11 56.52 0.40 -3.82 15 11 H -0.26 -4.22 7.11 56.52 0.40 -3.82 15 12 S 0.14 3.13 20.14 -107.50 -2.17 0.96 15 13 C -0.28 -6.55 6.48 -38.27 -0.25 -6.80 15 14 C -0.01 -0.22 10.00 -39.26 -0.39 -0.61 15 15 C -0.23 -4.50 9.96 -39.74 -0.40 -4.89 15 16 C -0.02 -0.51 9.56 -39.25 -0.38 -0.89 15 17 C -0.25 -5.64 6.08 -102.36 -0.62 -6.26 15 18 C 0.37 7.68 10.64 34.03 0.36 8.04 15 19 O -0.51 -11.46 17.17 5.48 0.09 -11.36 15 20 C 0.07 1.66 6.00 -104.92 -0.63 1.03 15 21 H 0.04 0.70 7.92 -51.93 -0.41 0.28 15 22 H 0.05 0.99 6.36 -51.93 -0.33 0.66 15 23 H 0.04 0.79 5.90 -51.93 -0.31 0.48 15 24 H 0.31 5.70 8.29 -40.82 -0.34 5.37 15 25 H 0.10 1.87 8.06 -52.49 -0.42 1.44 15 26 H 0.11 1.77 8.06 -52.49 -0.42 1.34 15 27 H 0.11 2.19 7.63 -52.49 -0.40 1.79 15 28 H 0.10 1.89 4.17 -52.49 -0.22 1.67 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -25.92 254.95 -7.95 -33.87 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -1.98 Total: 3.68 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -3.30 Total: -25.70 kcal Atomic # 7 Polarization: -15.99 SS G_CDS: 0.59 Total: -15.40 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 15.14 SS G_CDS: -5.03 Total: 10.11 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.17 Total: 0.96 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.92 -7.95 -33.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396371257.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.464 kcal (2) G-P(sol) polarization free energy of solvation -25.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds