Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37379 * 122.45792 * 2 1 4 4 C 1.39685 * 124.89420 * 0.04515 * 3 2 1 5 5 H 1.08000 * 119.99488 * 0.02562 * 4 3 2 6 6 C 1.40440 * 119.99972 * 179.97438 * 4 3 2 7 7 N 1.30602 * 119.99967 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00059 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46845 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47506 * 119.99762 * 8 6 4 11 11 H 1.48501 * 109.46952 * 240.00085 * 8 6 4 12 12 S 1.75491 * 110.21683 * 180.02562 * 3 2 1 13 13 C 1.76022 * 91.72923 * 0.02562 * 12 3 2 14 14 C 1.39534 * 130.26520 * 179.97438 * 13 12 3 15 15 C 1.37788 * 121.40014 * 179.97438 * 14 13 12 16 16 C 1.38245 * 121.12885 * 359.97438 * 15 14 13 17 17 C 1.39136 * 120.24946 * 0.29361 * 16 15 14 18 18 C 1.46433 * 120.35256 * 179.72356 * 17 16 15 19 19 O 1.21370 * 119.99834 * 354.53137 * 18 17 16 20 20 C 1.38908 * 122.46211 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.46744 * 256.06282 * 1 2 3 22 22 H 1.09000 * 109.47033 * 16.05855 * 1 2 3 23 23 H 1.08998 * 109.47173 * 136.06073 * 1 2 3 24 24 H 0.96995 * 119.99615 * 179.97438 * 7 6 4 25 25 H 1.08000 * 119.29899 * 359.97438 * 14 13 12 26 26 H 1.07997 * 119.42917 * 180.02562 * 15 14 13 27 27 H 1.07995 * 119.87330 * 180.02562 * 16 15 14 28 28 H 1.07998 * 120.00578 * 174.52750 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2444 1.1592 0.0000 4 6 1.7065 2.4483 0.0009 5 1 0.6354 2.5864 0.0021 6 6 2.5586 3.5647 0.0014 7 7 3.8538 3.3976 0.0014 8 14 1.8393 5.2887 0.0033 9 1 0.3565 5.2063 0.0035 10 1 2.2953 6.0140 1.2161 11 1 2.2940 6.0161 -1.2089 12 16 3.9594 0.7871 -0.0007 13 6 3.6382 -0.9436 -0.0018 14 6 4.5206 -2.0245 -0.0033 15 6 4.0634 -3.3244 -0.0034 16 6 2.7099 -3.6059 -0.0016 17 6 1.7789 -2.5720 -0.0057 18 6 0.3448 -2.8677 -0.0098 19 8 -0.0380 -4.0151 -0.1099 20 6 2.2527 -1.1720 -0.0005 21 1 -0.3633 -0.2475 0.9974 22 1 -0.3633 0.9876 -0.2843 23 1 -0.3633 -0.7400 -0.7131 24 1 4.4423 4.1686 0.0014 25 1 5.5844 -1.8384 -0.0043 26 1 4.7747 -4.1370 -0.0041 27 1 2.3740 -4.6323 -0.0013 28 1 -0.3725 -2.0648 0.0762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396371257.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = -31.477454 kcal Electronic energy + Delta-G solvation = -14835.950920 eV Core-core repulsion = 12327.700018 eV Total energy + Delta-G solvation = -2508.250903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44385 -38.89105 -37.10363 -35.35370 -31.94886 -31.04042 -29.52584 -27.27564 -24.65136 -23.57182 -21.90318 -20.46142 -19.27768 -17.92630 -17.34661 -16.86006 -16.30945 -15.62500 -15.26401 -15.19482 -15.08509 -14.40261 -14.25285 -13.60284 -13.47225 -13.27230 -13.17184 -13.15065 -12.40673 -12.14564 -11.94707 -11.86995 -11.62453 -11.07768 -11.04346 -10.35284 -10.08383 -9.25927 -9.02069 -8.27505 -6.56312 -0.29217 0.50971 1.30744 1.36279 1.39356 1.57928 1.68641 1.83541 1.86269 2.10854 2.81878 3.21678 3.66206 4.11639 4.22304 4.47755 4.57496 4.66817 4.81751 4.85414 4.99368 5.08505 5.13943 5.32398 5.38786 5.49426 5.70306 5.74492 5.83915 6.05428 6.22573 6.41927 6.48298 6.67987 7.82193 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.007747 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.002259 B = 3613.239738 C = 4453.683448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.362 4.362 3 C 0.034 3.966 4 C -0.370 4.370 5 H 0.119 0.881 6 C 0.016 3.984 7 N -0.778 5.778 8 Si 1.012 2.988 9 H -0.247 1.247 10 H -0.260 1.260 11 H -0.260 1.260 12 S 0.116 5.884 13 C -0.310 4.310 14 C -0.016 4.016 15 C -0.223 4.223 16 C -0.032 4.032 17 C -0.275 4.275 18 C 0.376 3.624 19 O -0.530 6.530 20 C 0.049 3.951 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.317 0.683 25 H 0.126 0.874 26 H 0.142 0.858 27 H 0.125 0.875 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 3.180 0.246 3.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.368 4.368 3 C -0.086 4.086 4 C -0.403 4.403 5 H 0.137 0.863 6 C -0.207 4.207 7 N -0.403 5.403 8 Si 0.830 3.170 9 H -0.170 1.170 10 H -0.184 1.184 11 H -0.184 1.184 12 S 0.377 5.623 13 C -0.424 4.424 14 C -0.038 4.038 15 C -0.243 4.243 16 C -0.052 4.052 17 C -0.278 4.278 18 C 0.244 3.756 19 O -0.411 6.411 20 C 0.041 3.959 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.143 0.857 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.237 3.559 0.197 3.773 hybrid contribution -1.007 -0.284 0.008 1.046 sum 0.230 3.275 0.205 3.290 Atomic orbital electron populations 1.20205 0.90394 1.01099 0.99672 1.18618 0.96797 0.89904 1.31450 1.21782 0.94916 0.96849 0.95054 1.20023 0.97202 0.88699 1.34379 0.86299 1.27442 0.94531 1.07530 0.91147 1.68624 1.05573 1.37153 1.28956 0.84633 0.80172 0.72713 0.79480 1.16957 1.18405 1.18426 1.84663 1.06468 0.91338 1.79838 1.23844 0.97301 1.02137 1.19110 1.20676 0.98333 0.91260 0.93550 1.20681 0.95271 0.96086 1.12260 1.21202 0.93331 0.98000 0.92641 1.21509 0.95872 0.91907 1.18501 1.24521 0.91087 0.91132 0.68850 1.90402 1.83198 1.26784 1.40743 1.18998 0.91972 0.92072 0.92906 0.93366 0.92191 0.92874 0.86888 0.85602 0.83995 0.85709 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.12 8.26 71.24 0.59 -1.53 15 2 C -0.36 -16.83 5.93 -19.90 -0.12 -16.95 15 3 C 0.03 1.64 6.12 22.42 0.14 1.77 15 4 C -0.37 -16.27 8.86 23.16 0.21 -16.06 15 5 H 0.12 4.80 6.40 -2.91 -0.02 4.78 15 6 C 0.02 0.62 5.50 85.41 0.47 1.09 15 7 N -0.78 -32.67 10.58 21.91 0.23 -32.44 15 8 Si 1.01 29.47 29.56 68.60 2.03 31.50 15 9 H -0.25 -6.92 7.11 99.48 0.71 -6.22 15 10 H -0.26 -7.33 7.11 99.48 0.71 -6.62 15 11 H -0.26 -7.34 7.11 99.48 0.71 -6.63 15 12 S 0.12 5.42 20.14 -56.49 -1.14 4.28 15 13 C -0.31 -14.41 6.48 23.12 0.15 -14.26 15 14 C -0.02 -0.64 10.00 22.48 0.22 -0.42 15 15 C -0.22 -8.32 9.96 22.16 0.22 -8.10 15 16 C -0.03 -1.28 9.56 22.49 0.22 -1.07 15 17 C -0.27 -12.08 6.08 -18.40 -0.11 -12.19 15 18 C 0.38 15.31 10.64 69.96 0.74 16.05 15 19 O -0.53 -23.25 17.17 -3.31 -0.06 -23.31 15 20 C 0.05 2.29 6.00 -20.05 -0.12 2.17 15 21 H 0.05 1.71 7.92 -2.39 -0.02 1.69 15 22 H 0.06 2.16 6.36 -2.39 -0.02 2.14 15 23 H 0.05 1.88 5.90 -2.39 -0.01 1.87 15 24 H 0.32 11.60 8.29 -92.71 -0.77 10.83 15 25 H 0.13 4.37 8.06 -2.91 -0.02 4.35 15 26 H 0.14 4.23 8.06 -2.91 -0.02 4.20 15 27 H 0.13 4.66 7.63 -2.91 -0.02 4.64 15 28 H 0.13 4.46 4.17 -2.91 -0.01 4.45 15 Total: -1.00 -54.84 254.95 4.87 -49.97 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.20 Total: 19.48 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 2.61 Total: -49.49 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.23 Total: -32.44 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 29.47 SS G_CDS: 2.03 Total: 31.50 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.14 Total: 4.28 kcal Total: -54.84 4.87 -49.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396371257.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.492 kcal (2) G-P(sol) polarization free energy of solvation -54.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds