Wall clock time and date at job start Mon Mar 30 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36068 * 119.57716 * 2 1 4 4 C 1.39860 * 120.74306 * 179.74302 * 3 2 1 5 5 C 1.46359 * 120.07621 * 180.23628 * 4 3 2 6 6 O 1.21384 * 119.99885 * 180.31187 * 5 4 3 7 7 C 1.47390 * 119.84288 * 0.55146 * 4 3 2 8 8 C 1.40470 * 129.26957 * 179.73794 * 7 4 3 9 9 C 1.32261 * 115.81639 * 179.97438 * 8 7 4 10 10 S 1.75516 * 110.71407 * 0.02562 * 9 8 7 11 11 C 1.39454 * 118.15234 * 359.70596 * 7 4 3 12 12 C 1.40588 * 119.57945 * 180.27070 * 2 1 3 13 13 C 1.40518 * 119.68581 * 359.96095 * 12 2 1 14 14 H 1.08007 * 119.99753 * 320.90523 * 13 12 2 15 15 C 1.40403 * 120.00402 * 140.90619 * 13 12 2 16 16 N 1.30564 * 119.99847 * 338.39891 * 15 13 12 17 17 Si 1.86807 * 120.00120 * 158.39241 * 15 13 12 18 18 H 1.48499 * 109.46875 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46906 * 120.00400 * 17 15 13 20 20 H 1.48502 * 109.46998 * 240.00452 * 17 15 13 21 21 H 1.09004 * 109.47345 * 269.72900 * 1 2 3 22 22 H 1.08996 * 109.47314 * 149.72541 * 1 2 3 23 23 H 1.08999 * 109.47100 * 29.72586 * 1 2 3 24 24 H 1.08004 * 119.62500 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.00556 * 0.30721 * 5 4 3 26 26 H 1.07993 * 122.08594 * 359.97438 * 8 7 4 27 27 H 1.08008 * 124.63900 * 179.97438 * 9 8 7 28 28 H 0.97006 * 119.99787 * 185.44630 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1786 1.1834 0.0000 4 6 3.5769 1.2118 0.0054 5 6 4.2845 2.4930 0.0105 6 8 5.4981 2.5161 0.0095 7 6 4.3363 -0.0514 -0.0012 8 6 5.7264 -0.2532 -0.0025 9 6 6.1254 -1.5141 -0.0084 10 16 4.7474 -2.6013 -0.0138 11 6 3.6214 -1.2488 -0.0064 12 6 2.2010 -1.2226 -0.0058 13 6 1.4829 -2.4304 -0.0107 14 1 0.5832 -2.5262 0.5793 15 6 1.9347 -3.5128 -0.7824 16 7 2.7348 -3.3050 -1.7930 17 14 1.3913 -5.2502 -0.3631 18 1 0.4915 -5.2160 0.8177 19 1 0.6672 -5.8351 -1.5201 20 1 2.5831 -6.0805 -0.0539 21 1 -0.3634 -0.0049 1.0277 22 1 -0.3634 -0.8875 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6256 2.1111 0.0004 25 1 3.7269 3.4179 0.0152 26 1 6.4255 0.5699 0.0011 27 1 7.1578 -1.8314 -0.0105 28 1 2.9839 -4.0410 -2.3737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396371311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:48 Heat of formation + Delta-G solvation = -8.144387 kcal Electronic energy + Delta-G solvation = -15165.230708 eV Core-core repulsion = 12657.991603 eV Total energy + Delta-G solvation = -2507.239105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.64747 -37.12275 -35.11635 -33.78089 -30.60205 -29.61392 -26.45320 -25.27711 -22.90545 -22.09138 -19.85293 -18.85731 -17.76079 -16.19737 -15.44082 -15.33137 -14.19467 -13.85642 -13.79847 -13.32976 -13.05018 -12.85637 -12.63014 -12.14263 -11.90323 -11.53100 -11.42246 -11.23981 -11.06871 -10.82764 -10.33278 -10.07884 -9.93213 -9.59731 -9.14133 -8.56065 -8.24902 -7.28581 -7.22563 -6.41195 -4.78336 1.46498 2.38759 2.77472 2.84339 2.91592 2.94548 3.35182 3.46365 3.57058 3.67192 4.39630 5.16762 5.33511 5.68014 5.94885 6.19000 6.27581 6.42505 6.48231 6.54017 6.67450 6.72907 6.81924 6.99847 7.11432 7.24448 7.40470 7.54664 7.72517 7.85765 8.09260 8.34383 8.48529 8.58649 9.70696 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.010596 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.287462 B = 2641.942611 C = 3599.104749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.212 4.212 3 C -0.012 4.012 4 C -0.305 4.305 5 C 0.380 3.620 6 O -0.516 6.516 7 C 0.002 3.998 8 C -0.127 4.127 9 C -0.236 4.236 10 S 0.105 5.895 11 C -0.177 4.177 12 C 0.178 3.822 13 C -0.442 4.442 14 H 0.097 0.903 15 C 0.069 3.931 16 N -0.739 5.739 17 Si 0.904 3.096 18 H -0.254 1.254 19 H -0.269 1.269 20 H -0.263 1.263 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.138 0.862 27 H 0.146 0.854 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 -0.349 1.507 2.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.217 4.217 3 C -0.032 4.032 4 C -0.310 4.310 5 C 0.248 3.752 6 O -0.398 6.398 7 C -0.008 4.008 8 C -0.159 4.159 9 C -0.371 4.371 10 S 0.371 5.629 11 C -0.293 4.293 12 C 0.172 3.828 13 C -0.469 4.469 14 H 0.115 0.885 15 C -0.156 4.156 16 N -0.361 5.361 17 Si 0.727 3.273 18 H -0.178 1.178 19 H -0.194 1.194 20 H -0.188 1.188 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.120 0.880 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.139 -2.093 1.327 2.728 hybrid contribution -0.114 0.722 -0.076 0.735 sum -1.253 -1.371 1.251 2.240 Atomic orbital electron populations 1.20398 0.92582 1.01008 0.99862 1.19124 0.94822 0.92105 1.15621 1.20259 0.92411 0.96568 0.93921 1.20628 0.92927 0.92048 1.25369 1.23294 0.88964 0.91847 0.71081 1.90370 1.17679 1.90701 1.41033 1.18991 0.91430 0.92326 0.98043 1.20094 0.95469 0.96749 1.03571 1.25442 1.02832 0.98146 1.10643 1.83677 0.94036 1.09215 1.75935 1.22706 0.97356 0.93834 1.15426 1.16808 0.88086 0.92692 0.85210 1.19802 1.09258 0.94803 1.23014 0.88486 1.26126 0.93275 1.01935 0.94268 1.69633 1.21937 1.35865 1.08667 0.86262 0.80139 0.80674 0.80274 1.17751 1.19385 1.18797 0.93885 0.91796 0.94016 0.87951 0.91246 0.84455 0.83604 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 9.39 36.01 0.34 -1.18 15 2 C -0.21 -4.72 5.88 -104.52 -0.61 -5.34 15 3 C -0.01 -0.25 9.26 -39.75 -0.37 -0.62 15 4 C -0.30 -6.89 6.08 -102.30 -0.62 -7.51 15 5 C 0.38 7.71 11.42 34.00 0.39 8.10 15 6 O -0.52 -11.82 15.25 5.47 0.08 -11.74 15 7 C 0.00 0.04 6.02 -104.88 -0.63 -0.59 15 8 C -0.13 -2.93 9.44 -40.67 -0.38 -3.31 15 9 C -0.24 -4.99 11.09 28.81 0.32 -4.67 15 10 S 0.10 2.37 19.95 -107.50 -2.14 0.23 15 11 C -0.18 -4.43 5.73 -37.66 -0.22 -4.64 15 12 C 0.18 4.38 5.36 -106.68 -0.57 3.81 15 13 C -0.44 -10.41 7.54 -37.91 -0.29 -10.70 15 14 H 0.10 2.17 7.42 -52.48 -0.39 1.78 15 15 C 0.07 1.55 4.21 -17.28 -0.07 1.48 15 16 N -0.74 -17.34 10.75 55.57 0.60 -16.74 15 17 Si 0.90 16.86 29.62 -169.99 -5.03 11.82 15 18 H -0.25 -4.68 7.11 56.52 0.40 -4.28 15 19 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.06 1.22 6.91 -51.93 -0.36 0.86 15 23 H 0.04 0.67 8.07 -51.93 -0.42 0.26 15 24 H 0.10 1.75 8.06 -52.48 -0.42 1.33 15 25 H 0.07 1.12 8.06 -52.49 -0.42 0.70 15 26 H 0.14 3.13 6.25 -52.49 -0.33 2.80 15 27 H 0.15 2.57 8.06 -52.48 -0.42 2.15 15 28 H 0.29 6.26 8.30 -40.82 -0.34 5.92 15 LS Contribution 257.58 15.07 3.88 3.88 Total: -1.00 -27.23 257.58 -7.66 -34.89 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -2.32 Total: 2.83 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.72 Total: -25.17 kcal Atomic # 7 Polarization: -17.34 SS G_CDS: 0.60 Total: -16.74 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.14 Total: 0.23 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.23 -7.66 -34.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396371311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.744 kcal (2) G-P(sol) polarization free energy of solvation -27.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds