Wall clock time and date at job start Mon Mar 30 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36068 * 119.57716 * 2 1 4 4 C 1.39860 * 120.74306 * 179.74302 * 3 2 1 5 5 C 1.46359 * 120.07621 * 180.23628 * 4 3 2 6 6 O 1.21384 * 119.99885 * 180.31187 * 5 4 3 7 7 C 1.47390 * 119.84288 * 0.55146 * 4 3 2 8 8 C 1.40470 * 129.26957 * 179.73794 * 7 4 3 9 9 C 1.32261 * 115.81639 * 179.97438 * 8 7 4 10 10 S 1.75516 * 110.71407 * 0.02562 * 9 8 7 11 11 C 1.39454 * 118.15234 * 359.70596 * 7 4 3 12 12 C 1.40588 * 119.57945 * 180.27070 * 2 1 3 13 13 C 1.40518 * 119.68581 * 359.96095 * 12 2 1 14 14 H 1.08007 * 119.99753 * 320.90523 * 13 12 2 15 15 C 1.40403 * 120.00402 * 140.90619 * 13 12 2 16 16 N 1.30564 * 119.99847 * 338.39891 * 15 13 12 17 17 Si 1.86807 * 120.00120 * 158.39241 * 15 13 12 18 18 H 1.48499 * 109.46875 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46906 * 120.00400 * 17 15 13 20 20 H 1.48502 * 109.46998 * 240.00452 * 17 15 13 21 21 H 1.09004 * 109.47345 * 269.72900 * 1 2 3 22 22 H 1.08996 * 109.47314 * 149.72541 * 1 2 3 23 23 H 1.08999 * 109.47100 * 29.72586 * 1 2 3 24 24 H 1.08004 * 119.62500 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.00556 * 0.30721 * 5 4 3 26 26 H 1.07993 * 122.08594 * 359.97438 * 8 7 4 27 27 H 1.08008 * 124.63900 * 179.97438 * 9 8 7 28 28 H 0.97006 * 119.99787 * 185.44630 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1786 1.1834 0.0000 4 6 3.5769 1.2118 0.0054 5 6 4.2845 2.4930 0.0105 6 8 5.4981 2.5161 0.0095 7 6 4.3363 -0.0514 -0.0012 8 6 5.7264 -0.2532 -0.0025 9 6 6.1254 -1.5141 -0.0084 10 16 4.7474 -2.6013 -0.0138 11 6 3.6214 -1.2488 -0.0064 12 6 2.2010 -1.2226 -0.0058 13 6 1.4829 -2.4304 -0.0107 14 1 0.5832 -2.5262 0.5793 15 6 1.9347 -3.5128 -0.7824 16 7 2.7348 -3.3050 -1.7930 17 14 1.3913 -5.2502 -0.3631 18 1 0.4915 -5.2160 0.8177 19 1 0.6672 -5.8351 -1.5201 20 1 2.5831 -6.0805 -0.0539 21 1 -0.3634 -0.0049 1.0277 22 1 -0.3634 -0.8875 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6256 2.1111 0.0004 25 1 3.7269 3.4179 0.0152 26 1 6.4255 0.5699 0.0011 27 1 7.1578 -1.8314 -0.0105 28 1 2.9839 -4.0410 -2.3737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396371311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:47 Heat of formation + Delta-G solvation = -21.912416 kcal Electronic energy + Delta-G solvation = -15165.827734 eV Core-core repulsion = 12657.991603 eV Total energy + Delta-G solvation = -2507.836131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32831 -38.80500 -36.81523 -35.45134 -32.27461 -31.27293 -28.16220 -26.87571 -24.56917 -23.80121 -21.50828 -20.53809 -19.49202 -17.87069 -17.06586 -17.00620 -15.82389 -15.53629 -15.42953 -15.01665 -14.67899 -14.50347 -14.25552 -13.73643 -13.53841 -13.12242 -13.05937 -12.83518 -12.66714 -12.31089 -11.97176 -11.71823 -11.57709 -11.28554 -10.83471 -10.20091 -10.00427 -8.96781 -8.94003 -8.15104 -6.53038 -0.24134 0.69184 1.10983 1.30562 1.38067 1.50155 1.60630 1.74060 1.92683 2.12331 2.71053 3.45071 3.85787 4.07794 4.38722 4.60189 4.68915 4.78562 4.88197 5.00725 5.10768 5.13343 5.24548 5.29748 5.41938 5.62408 5.71250 5.83592 6.01793 6.17329 6.38133 6.64568 6.78451 6.99395 8.07313 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.010596 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.287462 B = 2641.942611 C = 3599.104749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.230 4.230 3 C -0.010 4.010 4 C -0.325 4.325 5 C 0.386 3.614 6 O -0.545 6.545 7 C -0.031 4.031 8 C -0.147 4.147 9 C -0.222 4.222 10 S 0.100 5.900 11 C -0.210 4.210 12 C 0.147 3.853 13 C -0.465 4.465 14 H 0.100 0.900 15 C 0.040 3.960 16 N -0.772 5.772 17 Si 0.962 3.038 18 H -0.251 1.251 19 H -0.259 1.259 20 H -0.264 1.264 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.147 0.853 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.181 0.819 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 0.234 1.728 3.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.234 4.234 3 C -0.029 4.029 4 C -0.330 4.330 5 C 0.255 3.745 6 O -0.428 6.428 7 C -0.040 4.040 8 C -0.179 4.179 9 C -0.357 4.357 10 S 0.366 5.634 11 C -0.326 4.326 12 C 0.141 3.859 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.182 4.182 16 N -0.395 5.395 17 Si 0.782 3.218 18 H -0.174 1.174 19 H -0.183 1.183 20 H -0.188 1.188 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.164 0.836 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.199 0.801 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.915 -1.493 1.548 2.880 hybrid contribution 0.146 0.654 -0.144 0.686 sum -1.769 -0.839 1.404 2.409 Atomic orbital electron populations 1.20378 0.90210 1.01685 1.00905 1.19662 0.96796 0.91977 1.14983 1.20673 0.91977 0.97947 0.92273 1.21207 0.94066 0.92633 1.25090 1.23907 0.88559 0.92731 0.69270 1.90364 1.19247 1.91079 1.42077 1.19527 0.92340 0.93470 0.98667 1.20176 0.95151 0.97426 1.05145 1.25813 1.04057 0.97245 1.08564 1.83499 0.94442 1.09431 1.76064 1.23042 0.98158 0.94647 1.16778 1.17276 0.88404 0.94197 0.86047 1.19979 1.09780 0.95511 1.23854 0.88212 1.26785 0.92989 1.04888 0.93576 1.69671 1.23172 1.37087 1.09599 0.85395 0.79729 0.76324 0.80317 1.17370 1.18345 1.18814 0.92498 0.93032 0.91399 0.83584 0.85347 0.84533 0.80142 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.64 9.39 71.24 0.67 -1.97 15 2 C -0.23 -10.00 5.88 -19.80 -0.12 -10.12 15 3 C -0.01 -0.38 9.26 22.16 0.21 -0.18 15 4 C -0.32 -14.30 6.08 -18.36 -0.11 -14.41 15 5 C 0.39 14.72 11.42 69.93 0.80 15.52 15 6 O -0.54 -24.24 15.25 -3.35 -0.05 -24.30 15 7 C -0.03 -1.52 6.02 -20.03 -0.12 -1.64 15 8 C -0.15 -6.84 9.44 21.76 0.21 -6.63 15 9 C -0.22 -9.32 11.09 66.77 0.74 -8.58 15 10 S 0.10 4.54 19.95 -56.49 -1.13 3.42 15 11 C -0.21 -10.67 5.73 23.51 0.13 -10.54 15 12 C 0.15 7.29 5.36 -21.20 -0.11 7.17 15 13 C -0.46 -22.11 7.54 23.35 0.18 -21.93 15 14 H 0.10 4.50 7.42 -2.91 -0.02 4.47 15 15 C 0.04 1.79 4.21 85.41 0.36 2.15 15 16 N -0.77 -36.72 10.75 21.90 0.24 -36.49 15 17 Si 0.96 34.30 29.62 68.60 2.03 36.33 15 18 H -0.25 -8.68 7.11 99.48 0.71 -7.97 15 19 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 21 H 0.06 1.82 8.14 -2.38 -0.02 1.80 15 22 H 0.05 1.92 6.91 -2.39 -0.02 1.91 15 23 H 0.07 1.99 8.07 -2.39 -0.02 1.97 15 24 H 0.15 4.36 8.06 -2.91 -0.02 4.34 15 25 H 0.13 3.48 8.06 -2.91 -0.02 3.46 15 26 H 0.14 6.26 6.25 -2.91 -0.02 6.24 15 27 H 0.18 6.07 8.06 -2.91 -0.02 6.05 15 28 H 0.30 12.92 8.30 -92.70 -0.77 12.15 15 Total: -1.00 -59.52 257.58 5.10 -54.42 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.19 Total: 17.77 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 2.83 Total: -51.16 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.24 Total: -36.49 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.13 Total: 3.42 kcal Total: -59.52 5.10 -54.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396371311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.509 kcal (2) G-P(sol) polarization free energy of solvation -59.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds