Wall clock time and date at job start Mon Mar 30 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35928 * 122.33445 * 2 1 4 4 C 1.41691 * 124.84566 * 359.94564 * 3 2 1 5 5 O 1.21405 * 120.00022 * 359.72305 * 4 3 2 6 6 S 1.75504 * 110.31001 * 180.20812 * 3 2 1 7 7 C 1.76053 * 91.63262 * 359.70257 * 6 3 2 8 8 C 1.39891 * 130.35824 * 180.02562 * 7 6 3 9 9 C 1.37995 * 121.50570 * 180.29931 * 8 7 6 10 10 C 1.37739 * 121.17130 * 359.95001 * 9 8 7 11 11 C 1.40302 * 120.15621 * 0.02562 * 10 9 8 12 12 C 1.40347 * 120.40039 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99820 * 214.19479 * 12 11 10 14 14 C 1.40276 * 119.99850 * 34.19743 * 12 11 10 15 15 N 1.30657 * 120.00522 * 9.43882 * 14 12 11 16 16 Si 1.86802 * 119.99682 * 189.43898 * 14 12 11 17 17 H 1.48504 * 109.47111 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47417 * 120.00052 * 16 14 12 19 19 H 1.48507 * 109.47152 * 240.00056 * 16 14 12 20 20 C 1.39071 * 122.33935 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47529 * 93.31154 * 1 2 3 22 22 H 1.08998 * 109.47351 * 213.31756 * 1 2 3 23 23 H 1.09008 * 109.47059 * 333.31303 * 1 2 3 24 24 H 1.08000 * 119.99933 * 180.02562 * 4 3 2 25 25 H 1.07993 * 119.24324 * 0.24953 * 8 7 6 26 26 H 1.08006 * 119.41665 * 179.97438 * 9 8 7 27 27 H 1.07996 * 119.92099 * 180.02562 * 10 9 8 28 28 H 0.96997 * 120.00420 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2340 1.1485 0.0000 4 6 1.6844 2.4545 -0.0011 5 8 0.4799 2.6063 -0.0072 6 16 3.9505 0.7829 -0.0060 7 6 3.6330 -0.9488 0.0008 8 6 4.5181 -2.0321 0.0010 9 6 4.0633 -3.3349 0.0007 10 6 2.7156 -3.6196 0.0012 11 6 1.7753 -2.5783 0.0016 12 6 0.4009 -2.8625 0.0027 13 1 -0.2850 -2.2144 -0.5227 14 6 -0.0820 -3.9883 0.6862 15 7 0.7124 -4.6666 1.4710 16 14 -1.8608 -4.5176 0.4744 17 1 -2.5456 -3.5892 -0.4607 18 1 -1.9049 -5.8964 -0.0754 19 1 -2.5464 -4.4878 1.7914 20 6 2.2509 -1.1750 0.0005 21 1 -0.3634 -0.0594 -1.0259 22 1 -0.3634 -0.8587 0.5645 23 1 -0.3633 0.9183 0.4616 24 1 2.3371 3.3150 -0.0014 25 1 5.5816 -1.8444 0.0005 26 1 4.7767 -4.1458 0.0004 27 1 2.3820 -4.6467 0.0014 28 1 0.3784 -5.4448 1.9440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396371994.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:02 Heat of formation + Delta-G solvation = -5.460353 kcal Electronic energy + Delta-G solvation = -15035.448987 eV Core-core repulsion = 12528.326271 eV Total energy + Delta-G solvation = -2507.122716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94526 -37.75153 -34.67591 -34.00926 -30.32554 -29.00009 -27.91849 -25.93834 -23.14648 -21.70466 -20.42092 -18.39793 -17.97835 -16.53317 -15.63780 -15.08377 -14.68953 -14.10985 -13.94254 -13.79538 -13.11984 -12.83557 -12.60401 -12.06312 -11.87199 -11.63935 -11.53692 -11.43355 -11.08091 -10.74273 -10.29430 -10.07936 -9.85436 -9.64655 -9.57212 -8.83784 -8.24041 -7.51730 -7.26189 -6.81914 -4.75034 1.13067 2.46221 2.53145 2.83062 2.84206 2.89317 2.91824 2.94529 3.57876 3.76978 4.20152 5.08511 5.16897 5.87232 5.95491 6.07500 6.16090 6.38583 6.41652 6.47039 6.60471 6.69549 6.80426 6.95584 7.06197 7.23725 7.48685 7.55527 7.62930 7.74781 8.12355 8.21920 8.28294 8.43852 9.63184 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.009585 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.218267 B = 2920.449580 C = 4068.002031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.083 3.917 3 C -0.389 4.389 4 C 0.409 3.591 5 O -0.497 6.497 6 S 0.020 5.980 7 C -0.045 4.045 8 C -0.228 4.228 9 C -0.052 4.052 10 C -0.182 4.182 11 C 0.161 3.839 12 C -0.416 4.416 13 H 0.102 0.898 14 C 0.068 3.932 15 N -0.759 5.759 16 Si 0.919 3.081 17 H -0.253 1.253 18 H -0.266 1.266 19 H -0.267 1.267 20 C -0.208 4.208 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 1.214 -1.254 1.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.504 4.504 4 C 0.276 3.724 5 O -0.379 6.379 6 S 0.283 5.717 7 C -0.160 4.160 8 C -0.255 4.255 9 C -0.073 4.073 10 C -0.204 4.204 11 C 0.155 3.845 12 C -0.443 4.443 13 H 0.120 0.880 14 C -0.155 4.155 15 N -0.380 5.380 16 Si 0.741 3.259 17 H -0.176 1.176 18 H -0.191 1.191 19 H -0.192 1.192 20 C -0.213 4.213 21 H 0.088 0.912 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.615 2.109 -1.090 2.871 hybrid contribution -1.464 -1.251 0.097 1.929 sum 0.150 0.858 -0.993 1.321 Atomic orbital electron populations 1.21295 0.90406 1.04601 1.02346 1.19337 0.96555 0.90444 0.86584 1.22807 0.96217 0.98973 1.32391 1.21276 0.89691 0.89983 0.71490 1.90426 1.18146 1.88819 1.40513 1.83215 1.05550 1.00322 1.82613 1.22489 0.96664 0.95077 1.01774 1.19649 0.96431 0.90981 1.18434 1.20576 0.95784 0.94589 0.96349 1.21069 0.91465 0.99014 1.08850 1.18523 0.93279 0.87695 0.84968 1.20130 0.93572 1.06234 1.24326 0.87978 1.26234 1.01528 0.94625 0.93162 1.69711 1.37869 1.13671 1.16799 0.86040 0.80178 0.79749 0.79885 1.17584 1.19086 1.19206 1.19035 0.90947 0.93801 1.17556 0.91249 0.89253 0.89791 0.90691 0.88547 0.88145 0.86092 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 7.99 36.00 0.29 -2.41 15 2 C 0.08 1.89 5.89 -105.14 -0.62 1.27 15 3 C -0.39 -8.19 6.20 -39.09 -0.24 -8.43 15 4 C 0.41 7.75 11.46 32.05 0.37 8.11 15 5 O -0.50 -10.48 14.61 5.45 0.08 -10.40 15 6 S 0.02 0.39 23.23 -107.50 -2.50 -2.10 15 7 C -0.04 -1.02 6.49 -38.29 -0.25 -1.26 15 8 C -0.23 -4.91 10.02 -39.05 -0.39 -5.30 15 9 C -0.05 -1.10 9.95 -39.85 -0.40 -1.50 15 10 C -0.18 -4.25 8.60 -38.99 -0.34 -4.58 15 11 C 0.16 3.93 5.67 -104.25 -0.59 3.34 15 12 C -0.42 -9.64 7.15 -38.02 -0.27 -9.91 15 13 H 0.10 2.26 5.58 -52.49 -0.29 1.97 15 14 C 0.07 1.47 5.24 -17.29 -0.09 1.38 15 15 N -0.76 -17.07 11.15 55.57 0.62 -16.45 15 16 Si 0.92 16.25 29.57 -169.99 -5.03 11.22 15 17 H -0.25 -4.45 7.11 56.52 0.40 -4.05 15 18 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 19 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 20 C -0.21 -5.02 6.00 -104.83 -0.63 -5.65 15 21 H 0.07 1.38 8.07 -51.93 -0.42 0.96 15 22 H 0.09 1.89 5.48 -51.93 -0.28 1.60 15 23 H 0.08 1.75 5.57 -51.92 -0.29 1.46 15 24 H 0.08 1.16 8.06 -52.49 -0.42 0.73 15 25 H 0.10 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.10 1.83 8.06 -52.48 -0.42 1.40 15 27 H 0.12 2.82 6.58 -52.49 -0.35 2.47 15 28 H 0.29 5.86 8.29 -40.82 -0.34 5.52 15 LS Contribution 254.28 15.07 3.83 3.83 Total: -1.00 -25.66 254.28 -8.19 -33.84 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.03 Total: 4.99 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.16 Total: -24.94 kcal Atomic # 7 Polarization: -17.07 SS G_CDS: 0.62 Total: -16.45 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.22 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.50 Total: -2.10 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.66 -8.19 -33.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396371994.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.383 kcal (2) G-P(sol) polarization free energy of solvation -25.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds