Wall clock time and date at job start Mon Mar 30 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35928 * 122.33445 * 2 1 4 4 C 1.41691 * 124.84566 * 359.94564 * 3 2 1 5 5 O 1.21405 * 120.00022 * 359.72305 * 4 3 2 6 6 S 1.75504 * 110.31001 * 180.20812 * 3 2 1 7 7 C 1.76053 * 91.63262 * 359.70257 * 6 3 2 8 8 C 1.39891 * 130.35824 * 180.02562 * 7 6 3 9 9 C 1.37995 * 121.50570 * 180.29931 * 8 7 6 10 10 C 1.37739 * 121.17130 * 359.95001 * 9 8 7 11 11 C 1.40302 * 120.15621 * 0.02562 * 10 9 8 12 12 C 1.40347 * 120.40039 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99820 * 214.19479 * 12 11 10 14 14 C 1.40276 * 119.99850 * 34.19743 * 12 11 10 15 15 N 1.30657 * 120.00522 * 9.43882 * 14 12 11 16 16 Si 1.86802 * 119.99682 * 189.43898 * 14 12 11 17 17 H 1.48504 * 109.47111 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47417 * 120.00052 * 16 14 12 19 19 H 1.48507 * 109.47152 * 240.00056 * 16 14 12 20 20 C 1.39071 * 122.33935 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47529 * 93.31154 * 1 2 3 22 22 H 1.08998 * 109.47351 * 213.31756 * 1 2 3 23 23 H 1.09008 * 109.47059 * 333.31303 * 1 2 3 24 24 H 1.08000 * 119.99933 * 180.02562 * 4 3 2 25 25 H 1.07993 * 119.24324 * 0.24953 * 8 7 6 26 26 H 1.08006 * 119.41665 * 179.97438 * 9 8 7 27 27 H 1.07996 * 119.92099 * 180.02562 * 10 9 8 28 28 H 0.96997 * 120.00420 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2340 1.1485 0.0000 4 6 1.6844 2.4545 -0.0011 5 8 0.4799 2.6063 -0.0072 6 16 3.9505 0.7829 -0.0060 7 6 3.6330 -0.9488 0.0008 8 6 4.5181 -2.0321 0.0010 9 6 4.0633 -3.3349 0.0007 10 6 2.7156 -3.6196 0.0012 11 6 1.7753 -2.5783 0.0016 12 6 0.4009 -2.8625 0.0027 13 1 -0.2850 -2.2144 -0.5227 14 6 -0.0820 -3.9883 0.6862 15 7 0.7124 -4.6666 1.4710 16 14 -1.8608 -4.5176 0.4744 17 1 -2.5456 -3.5892 -0.4607 18 1 -1.9049 -5.8964 -0.0754 19 1 -2.5464 -4.4878 1.7914 20 6 2.2509 -1.1750 0.0005 21 1 -0.3634 -0.0594 -1.0259 22 1 -0.3634 -0.8587 0.5645 23 1 -0.3633 0.9183 0.4616 24 1 2.3371 3.3150 -0.0014 25 1 5.5816 -1.8444 0.0005 26 1 4.7767 -4.1458 0.0004 27 1 2.3820 -4.6467 0.0014 28 1 0.3784 -5.4448 1.9440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396371994.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:01 Heat of formation + Delta-G solvation = -17.371070 kcal Electronic energy + Delta-G solvation = -15035.965475 eV Core-core repulsion = 12528.326271 eV Total energy + Delta-G solvation = -2507.639204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.58597 -39.39489 -36.34080 -35.66588 -32.02002 -30.67965 -29.57255 -27.62333 -24.79077 -23.40256 -22.05994 -20.05892 -19.63791 -18.15713 -17.25189 -16.64489 -16.35139 -15.78070 -15.58244 -15.36600 -14.73450 -14.43640 -14.26320 -13.72571 -13.48571 -13.28933 -13.19327 -12.93824 -12.73202 -12.18865 -11.93937 -11.73003 -11.50792 -11.30120 -11.19718 -10.42870 -9.94228 -9.20662 -8.89031 -8.45748 -6.46813 -0.53216 0.80622 0.89185 1.17471 1.25338 1.37564 1.46816 1.52807 2.10970 2.14723 2.55177 3.41903 3.66315 4.21386 4.34556 4.45494 4.49648 4.74675 4.78664 4.82062 4.96624 5.00022 5.10941 5.27686 5.37171 5.56205 5.77801 5.85794 5.94250 6.04019 6.42865 6.57591 6.69063 6.73156 8.04964 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.009585 C = 0.006881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.218267 B = 2920.449580 C = 4068.002031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.395 4.395 4 C 0.414 3.586 5 O -0.516 6.516 6 S 0.084 5.916 7 C -0.077 4.077 8 C -0.235 4.235 9 C -0.050 4.050 10 C -0.206 4.206 11 C 0.133 3.867 12 C -0.441 4.441 13 H 0.102 0.898 14 C 0.035 3.965 15 N -0.790 5.790 16 Si 0.985 3.015 17 H -0.253 1.253 18 H -0.258 1.258 19 H -0.263 1.263 20 C -0.233 4.233 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 2.284 -1.360 2.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.038 3.962 3 C -0.510 4.510 4 C 0.281 3.719 5 O -0.398 6.398 6 S 0.348 5.652 7 C -0.192 4.192 8 C -0.262 4.262 9 C -0.072 4.072 10 C -0.228 4.228 11 C 0.127 3.873 12 C -0.467 4.467 13 H 0.120 0.880 14 C -0.185 4.185 15 N -0.412 5.412 16 Si 0.804 3.196 17 H -0.176 1.176 18 H -0.182 1.182 19 H -0.188 1.188 20 C -0.238 4.238 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.043 3.192 -1.197 3.974 hybrid contribution -1.473 -1.429 0.133 2.057 sum 0.570 1.763 -1.064 2.136 Atomic orbital electron populations 1.21174 0.89882 1.04056 1.02417 1.19589 0.97396 0.90867 0.88318 1.23380 0.97438 0.99680 1.30503 1.21917 0.89777 0.90322 0.69933 1.90425 1.19514 1.89017 1.40816 1.82835 1.03685 0.97356 1.81294 1.22947 0.96666 0.97498 1.02125 1.19977 0.97554 0.90775 1.17851 1.20902 0.95593 0.95733 0.94930 1.21089 0.92470 0.98474 1.10813 1.18884 0.94220 0.88399 0.85763 1.20308 0.93470 1.07515 1.25444 0.87981 1.26994 1.05222 0.94026 0.92270 1.69737 1.39722 1.14301 1.17441 0.85076 0.75235 0.79474 0.79776 1.17583 1.18174 1.18794 1.19344 0.92052 0.94207 1.18224 0.90898 0.90096 0.89823 0.85450 0.86088 0.85207 0.87014 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 7.99 71.23 0.57 -4.40 15 2 C 0.05 2.31 5.89 -20.20 -0.12 2.19 15 3 C -0.40 -15.88 6.20 22.59 0.14 -15.74 15 4 C 0.41 14.43 11.46 68.67 0.79 15.21 15 5 O -0.52 -20.65 14.61 -3.42 -0.05 -20.70 15 6 S 0.08 3.12 23.23 -56.49 -1.31 1.81 15 7 C -0.08 -3.44 6.49 23.11 0.15 -3.29 15 8 C -0.23 -9.87 10.02 22.61 0.23 -9.64 15 9 C -0.05 -2.14 9.95 22.09 0.22 -1.92 15 10 C -0.21 -9.88 8.60 22.65 0.19 -9.68 15 11 C 0.13 6.67 5.67 -19.62 -0.11 6.56 15 12 C -0.44 -21.09 7.15 23.28 0.17 -20.93 15 13 H 0.10 4.69 5.58 -2.91 -0.02 4.67 15 14 C 0.04 1.56 5.24 85.36 0.45 2.01 15 15 N -0.79 -36.31 11.15 21.88 0.24 -36.07 15 16 Si 0.99 33.42 29.57 68.60 2.03 35.45 15 17 H -0.25 -8.46 7.11 99.48 0.71 -7.75 15 18 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 19 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 20 C -0.23 -11.36 6.00 -20.00 -0.12 -11.48 15 21 H 0.07 2.94 8.07 -2.39 -0.02 2.92 15 22 H 0.08 3.52 5.48 -2.39 -0.01 3.50 15 23 H 0.08 3.48 5.57 -2.38 -0.01 3.47 15 24 H 0.13 3.25 8.06 -2.91 -0.02 3.23 15 25 H 0.12 4.37 8.06 -2.91 -0.02 4.34 15 26 H 0.13 4.56 8.06 -2.91 -0.02 4.54 15 27 H 0.11 5.41 6.58 -2.91 -0.02 5.39 15 28 H 0.30 12.24 8.29 -92.71 -0.77 11.47 15 Total: -1.00 -55.06 254.28 4.66 -50.40 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.20 Total: 20.19 kcal Atomic # 6 Polarization: -53.64 SS G_CDS: 2.55 Total: -51.09 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.24 Total: -36.07 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 14 Polarization: 33.42 SS G_CDS: 2.03 Total: 35.45 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -55.06 4.66 -50.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396371994.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.027 kcal (2) G-P(sol) polarization free energy of solvation -55.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds