Wall clock time and date at job start Mon Mar 30 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37739 * 119.92268 * 2 1 4 4 C 1.37993 * 121.16681 * 179.97438 * 3 2 1 5 5 C 1.39892 * 121.50886 * 359.97438 * 4 3 2 6 6 S 1.76056 * 130.35411 * 179.97438 * 5 4 3 7 7 C 1.75497 * 91.62760 * 180.02562 * 6 5 4 8 8 C 1.41696 * 124.84114 * 179.97438 * 7 6 5 9 9 O 1.21411 * 120.00011 * 180.02562 * 8 7 6 10 10 C 1.35922 * 110.31435 * 0.02562 * 7 6 5 11 11 C 1.39078 * 115.32723 * 359.71484 * 10 7 6 12 12 C 1.40297 * 119.91542 * 179.97438 * 2 1 3 13 13 C 1.40338 * 120.40789 * 0.02562 * 12 2 1 14 14 H 1.07999 * 120.00182 * 321.28475 * 13 12 2 15 15 C 1.40278 * 120.00010 * 141.28266 * 13 12 2 16 16 N 1.30661 * 120.00204 * 334.39138 * 15 13 12 17 17 Si 1.86802 * 119.99854 * 154.38952 * 15 13 12 18 18 H 1.48504 * 109.47149 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47332 * 300.00169 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00118 * 17 15 13 21 21 H 1.09004 * 109.47231 * 265.17543 * 1 2 3 22 22 H 1.09008 * 109.47071 * 25.17467 * 1 2 3 23 23 H 1.08996 * 109.47277 * 145.17053 * 1 2 3 24 24 H 1.07999 * 119.41556 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.24767 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.00398 * 0.03022 * 8 7 6 27 27 H 1.08004 * 122.33492 * 179.97438 * 10 7 6 28 28 H 0.97002 * 119.99592 * 352.96310 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1938 0.0000 4 6 3.5736 1.2237 0.0005 5 6 4.3305 0.0472 0.0016 6 16 6.0756 -0.1856 0.0019 7 6 5.8929 -1.9311 0.0027 8 6 6.9653 -2.8572 0.0027 9 8 6.7375 -4.0498 0.0028 10 6 4.5761 -2.2678 0.0022 11 6 3.6883 -1.1972 0.0074 12 6 2.2066 -1.2160 0.0005 13 6 1.5118 -2.4353 0.0005 14 1 0.6102 -2.5431 0.5852 15 6 1.9884 -3.5142 -0.7589 16 7 2.7282 -3.2947 -1.8133 17 14 1.5653 -5.2647 -0.2627 18 1 2.1850 -6.2145 -1.2215 19 1 2.0833 -5.5310 1.1033 20 1 0.0908 -5.4403 -0.2759 21 1 -0.3634 -0.0864 1.0241 22 1 -0.3634 0.9301 -0.4372 23 1 -0.3633 -0.8435 -0.5869 24 1 1.6433 2.1228 -0.0004 25 1 4.0808 2.1773 0.0001 26 1 7.9854 -2.5024 0.0026 27 1 4.2424 -3.2950 0.0021 28 1 2.8637 -2.3881 -2.1304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396372078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:17 Heat of formation + Delta-G solvation = -14.867388 kcal Electronic energy + Delta-G solvation = -15137.924270 eV Core-core repulsion = 12630.393634 eV Total energy + Delta-G solvation = -2507.530636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82782 -37.96532 -34.47933 -34.29747 -31.04024 -29.18678 -26.78692 -25.27756 -24.11541 -21.21929 -20.82744 -18.80196 -18.02866 -16.65456 -15.58310 -15.15924 -14.30559 -14.11954 -14.02672 -13.69831 -13.47087 -13.08913 -12.69010 -12.22888 -11.88716 -11.86272 -11.46292 -11.20828 -10.74346 -10.59127 -10.52397 -10.26768 -9.87349 -9.58217 -9.21399 -9.19655 -8.46225 -7.73255 -7.50248 -6.84560 -4.81901 1.07163 2.39174 2.43085 2.75113 2.82187 3.00231 3.09380 3.22614 3.74572 3.77531 4.20702 4.93847 5.03727 5.74365 5.86055 5.97613 6.14138 6.17191 6.40299 6.43784 6.48873 6.66193 6.76882 6.90170 6.98008 7.27198 7.30580 7.43754 7.50457 7.62693 7.82664 8.14473 8.22110 8.37600 9.60481 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.013935 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.373975 B = 2008.909798 C = 3597.851490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.213 4.213 3 C -0.031 4.031 4 C -0.236 4.236 5 C -0.042 4.042 6 S 0.034 5.966 7 C -0.375 4.375 8 C 0.410 3.590 9 O -0.490 6.490 10 C 0.052 3.948 11 C -0.204 4.204 12 C 0.142 3.858 13 C -0.474 4.474 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.748 5.748 17 Si 1.057 2.943 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.270 1.270 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 3.204 1.833 3.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.217 4.217 3 C -0.052 4.052 4 C -0.263 4.263 5 C -0.158 4.158 6 S 0.296 5.704 7 C -0.490 4.490 8 C 0.274 3.726 9 O -0.370 6.370 10 C 0.022 3.978 11 C -0.209 4.209 12 C 0.136 3.864 13 C -0.499 4.499 14 H 0.113 0.887 15 C -0.193 4.193 16 N -0.368 5.368 17 Si 0.878 3.122 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.195 1.195 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.386 1.878 1.381 2.712 hybrid contribution -1.304 1.106 0.324 1.740 sum 0.082 2.984 1.705 3.438 Atomic orbital electron populations 1.20362 0.92457 1.00675 1.00257 1.19605 0.94876 0.92322 1.14890 1.20376 0.93036 0.96422 0.95393 1.19589 0.93120 0.94197 1.19383 1.22625 0.94549 0.97429 1.01178 1.83232 1.04166 1.01599 1.81357 1.23201 0.98880 0.97096 1.29774 1.21402 0.92317 0.87498 0.71370 1.90525 1.88515 1.18848 1.39104 1.20761 0.90482 1.00274 0.86278 1.19096 0.94155 0.90628 1.17067 1.18368 0.88073 0.92648 0.87334 1.20767 1.10069 0.95791 1.23301 0.88709 1.27344 0.91811 1.07007 0.93153 1.70416 1.21503 1.28682 1.16151 0.83730 0.77630 0.72717 0.78075 1.19036 1.19218 1.19483 0.93639 0.93911 0.92040 0.88019 0.88338 0.90266 0.84021 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.35 36.00 0.34 -1.14 15 2 C -0.21 -4.62 5.93 -104.03 -0.62 -5.24 15 3 C -0.03 -0.63 9.58 -39.85 -0.38 -1.01 15 4 C -0.24 -4.96 10.02 -39.05 -0.39 -5.35 15 5 C -0.04 -0.95 6.49 -38.29 -0.25 -1.19 15 6 S 0.03 0.67 23.23 -107.50 -2.50 -1.83 15 7 C -0.37 -8.22 6.20 -39.09 -0.24 -8.47 15 8 C 0.41 8.24 11.46 32.05 0.37 8.61 15 9 O -0.49 -11.40 17.46 5.44 0.10 -11.31 15 10 C 0.05 1.27 7.99 -40.10 -0.32 0.95 15 11 C -0.20 -4.97 5.14 -104.83 -0.54 -5.51 15 12 C 0.14 3.40 5.07 -104.25 -0.53 2.87 15 13 C -0.47 -11.11 7.61 -38.03 -0.29 -11.40 15 14 H 0.10 2.11 7.58 -52.49 -0.40 1.71 15 15 C 0.03 0.79 3.59 -17.28 -0.06 0.72 15 16 N -0.75 -18.56 11.67 55.57 0.65 -17.91 15 17 Si 1.06 20.25 30.01 -169.99 -5.10 15.15 15 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 20 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.04 0.68 8.04 -51.92 -0.42 0.26 15 23 H 0.06 1.16 7.23 -51.93 -0.38 0.78 15 24 H 0.10 1.73 8.05 -52.49 -0.42 1.31 15 25 H 0.10 1.84 8.06 -52.48 -0.42 1.42 15 26 H 0.08 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.14 3.65 5.98 -52.48 -0.31 3.34 15 28 H 0.30 7.81 7.30 -40.82 -0.30 7.51 15 LS Contribution 260.55 15.07 3.93 3.93 Total: -1.00 -26.30 260.55 -8.13 -34.43 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -2.29 Total: 3.70 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -2.92 Total: -26.16 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.65 Total: -17.91 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.10 Total: -11.31 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.10 Total: 15.15 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.30 -8.13 -34.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396372078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.565 kcal (2) G-P(sol) polarization free energy of solvation -26.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds