Wall clock time and date at job start Mon Mar 30 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37739 * 119.92268 * 2 1 4 4 C 1.37993 * 121.16681 * 179.97438 * 3 2 1 5 5 C 1.39892 * 121.50886 * 359.97438 * 4 3 2 6 6 S 1.76056 * 130.35411 * 179.97438 * 5 4 3 7 7 C 1.75497 * 91.62760 * 180.02562 * 6 5 4 8 8 C 1.41696 * 124.84114 * 179.97438 * 7 6 5 9 9 O 1.21411 * 120.00011 * 180.02562 * 8 7 6 10 10 C 1.35922 * 110.31435 * 0.02562 * 7 6 5 11 11 C 1.39078 * 115.32723 * 359.71484 * 10 7 6 12 12 C 1.40297 * 119.91542 * 179.97438 * 2 1 3 13 13 C 1.40338 * 120.40789 * 0.02562 * 12 2 1 14 14 H 1.07999 * 120.00182 * 321.28475 * 13 12 2 15 15 C 1.40278 * 120.00010 * 141.28266 * 13 12 2 16 16 N 1.30661 * 120.00204 * 334.39138 * 15 13 12 17 17 Si 1.86802 * 119.99854 * 154.38952 * 15 13 12 18 18 H 1.48504 * 109.47149 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47332 * 300.00169 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00118 * 17 15 13 21 21 H 1.09004 * 109.47231 * 265.17543 * 1 2 3 22 22 H 1.09008 * 109.47071 * 25.17467 * 1 2 3 23 23 H 1.08996 * 109.47277 * 145.17053 * 1 2 3 24 24 H 1.07999 * 119.41556 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.24767 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.00398 * 0.03022 * 8 7 6 27 27 H 1.08004 * 122.33492 * 179.97438 * 10 7 6 28 28 H 0.97002 * 119.99592 * 352.96310 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1938 0.0000 4 6 3.5736 1.2237 0.0005 5 6 4.3305 0.0472 0.0016 6 16 6.0756 -0.1856 0.0019 7 6 5.8929 -1.9311 0.0027 8 6 6.9653 -2.8572 0.0027 9 8 6.7375 -4.0498 0.0028 10 6 4.5761 -2.2678 0.0022 11 6 3.6883 -1.1972 0.0074 12 6 2.2066 -1.2160 0.0005 13 6 1.5118 -2.4353 0.0005 14 1 0.6102 -2.5431 0.5852 15 6 1.9884 -3.5142 -0.7589 16 7 2.7282 -3.2947 -1.8133 17 14 1.5653 -5.2647 -0.2627 18 1 2.1850 -6.2145 -1.2215 19 1 2.0833 -5.5310 1.1033 20 1 0.0908 -5.4403 -0.2759 21 1 -0.3634 -0.0864 1.0241 22 1 -0.3634 0.9301 -0.4372 23 1 -0.3633 -0.8435 -0.5869 24 1 1.6433 2.1228 -0.0004 25 1 4.0808 2.1773 0.0001 26 1 7.9854 -2.5024 0.0026 27 1 4.2424 -3.2950 0.0021 28 1 2.8637 -2.3881 -2.1304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396372078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:17 Heat of formation + Delta-G solvation = -27.796839 kcal Electronic energy + Delta-G solvation = -15138.484933 eV Core-core repulsion = 12630.393634 eV Total energy + Delta-G solvation = -2508.091299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52787 -39.66104 -36.16092 -36.01406 -32.68310 -30.88491 -28.41941 -26.92854 -25.83233 -22.88113 -22.49677 -20.50026 -19.73612 -18.30482 -17.23787 -16.86860 -15.90202 -15.79118 -15.68805 -15.41974 -15.10571 -14.75590 -14.32133 -13.84128 -13.54542 -13.50525 -12.99566 -12.76117 -12.40042 -12.20072 -12.09203 -11.85959 -11.52920 -11.24452 -10.90563 -10.88836 -10.16262 -9.50655 -9.18754 -8.50218 -6.57089 -0.65482 0.68759 0.77977 1.06987 1.10436 1.42790 1.53612 1.69553 2.06727 2.19375 2.50449 3.22449 3.52204 4.18123 4.26914 4.31507 4.48663 4.64959 4.81071 4.87148 4.97890 5.03219 5.08624 5.27748 5.31705 5.50302 5.56005 5.74635 5.80434 5.94970 6.14789 6.50190 6.53682 6.68432 7.79779 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.013935 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.373975 B = 2008.909798 C = 3597.851490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.229 4.229 3 C -0.032 4.032 4 C -0.233 4.233 5 C -0.079 4.079 6 S 0.110 5.890 7 C -0.386 4.386 8 C 0.414 3.586 9 O -0.524 6.524 10 C 0.024 3.976 11 C -0.226 4.226 12 C 0.115 3.885 13 C -0.501 4.501 14 H 0.098 0.902 15 C 0.011 3.989 16 N -0.779 5.779 17 Si 1.095 2.905 18 H -0.276 1.276 19 H -0.268 1.268 20 H -0.239 1.239 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.140 0.860 27 H 0.116 0.884 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 4.914 2.374 5.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.233 4.233 3 C -0.053 4.053 4 C -0.259 4.259 5 C -0.195 4.195 6 S 0.374 5.626 7 C -0.501 4.501 8 C 0.280 3.720 9 O -0.405 6.405 10 C -0.007 4.007 11 C -0.231 4.231 12 C 0.110 3.890 13 C -0.527 4.527 14 H 0.116 0.884 15 C -0.211 4.211 16 N -0.399 5.399 17 Si 0.912 3.088 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.163 1.163 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.156 0.844 27 H 0.134 0.866 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.873 3.617 1.928 4.506 hybrid contribution -1.336 0.753 0.202 1.546 sum 0.537 4.370 2.130 4.890 Atomic orbital electron populations 1.20350 0.90355 1.01564 1.00928 1.20087 0.96704 0.92173 1.14324 1.20817 0.93175 0.97426 0.93865 1.20047 0.93706 0.94728 1.17468 1.23063 0.96771 0.97460 1.02187 1.82770 1.01369 0.98462 1.80017 1.23764 0.98731 0.99661 1.27927 1.22184 0.93968 0.86445 0.69441 1.90518 1.89199 1.20504 1.40288 1.20702 0.91890 0.99339 0.88797 1.19341 0.94752 0.91493 1.17544 1.18801 0.88546 0.93927 0.87739 1.20854 1.10809 0.96484 1.24574 0.88375 1.28343 0.90702 1.09754 0.92280 1.70521 1.24288 1.27213 1.17840 0.83302 0.79152 0.69107 0.77268 1.20075 1.19262 1.16273 0.92585 0.91202 0.93300 0.84210 0.85591 0.84356 0.86640 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.65 9.35 71.23 0.67 -1.99 15 2 C -0.23 -9.75 5.93 -19.48 -0.12 -9.86 15 3 C -0.03 -1.21 9.58 22.09 0.21 -0.99 15 4 C -0.23 -9.20 10.02 22.61 0.23 -8.97 15 5 C -0.08 -3.47 6.49 23.11 0.15 -3.32 15 6 S 0.11 4.10 23.23 -56.49 -1.31 2.78 15 7 C -0.39 -16.65 6.20 22.59 0.14 -16.51 15 8 C 0.41 15.96 11.46 68.67 0.79 16.75 15 9 O -0.52 -24.27 17.46 -3.44 -0.06 -24.33 15 10 C 0.02 1.19 7.99 21.93 0.18 1.37 15 11 C -0.23 -11.18 5.14 -20.00 -0.10 -11.28 15 12 C 0.12 5.65 5.07 -19.62 -0.10 5.55 15 13 C -0.50 -24.30 7.61 23.28 0.18 -24.12 15 14 H 0.10 4.50 7.58 -2.91 -0.02 4.47 15 15 C 0.01 0.51 3.59 85.36 0.31 0.82 15 16 N -0.78 -40.59 11.67 21.88 0.26 -40.33 15 17 Si 1.09 42.03 30.01 68.60 2.06 44.09 15 18 H -0.28 -10.91 7.11 99.48 0.71 -10.21 15 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 20 H -0.24 -7.95 7.11 99.48 0.71 -7.24 15 21 H 0.06 1.83 8.14 -2.38 -0.02 1.81 15 22 H 0.07 2.04 8.04 -2.38 -0.02 2.02 15 23 H 0.05 1.82 7.23 -2.39 -0.02 1.81 15 24 H 0.14 4.17 8.05 -2.91 -0.02 4.15 15 25 H 0.13 4.20 8.06 -2.91 -0.02 4.18 15 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 27 H 0.12 6.28 5.98 -2.91 -0.02 6.27 15 28 H 0.28 15.57 7.30 -92.71 -0.68 14.89 15 Total: -1.00 -58.65 260.55 4.74 -53.91 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.28 Total: 16.46 kcal Atomic # 6 Polarization: -55.09 SS G_CDS: 2.52 Total: -52.57 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.26 Total: -40.33 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.06 Total: 44.09 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.31 Total: 2.78 kcal Total: -58.65 4.74 -53.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396372078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.114 kcal (2) G-P(sol) polarization free energy of solvation -58.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds