Wall clock time and date at job start Mon Mar 30 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38738 * 119.86366 * 2 1 4 4 C 1.37448 * 120.14520 * 179.97438 * 3 2 1 5 5 C 1.40157 * 120.47931 * 359.97438 * 4 3 2 6 6 S 1.75868 * 129.58970 * 180.31807 * 5 4 3 7 7 C 1.75165 * 92.85050 * 180.08163 * 6 5 4 8 8 C 1.41082 * 124.64647 * 179.91261 * 7 6 5 9 9 O 1.21503 * 120.00721 * 179.70350 * 8 7 6 10 10 C 1.38919 * 110.70964 * 359.64538 * 7 6 5 11 11 C 1.39508 * 123.36832 * 180.30650 * 10 7 6 12 12 H 1.07996 * 120.00144 * 39.10633 * 11 10 7 13 13 C 1.40726 * 119.99702 * 219.11048 * 11 10 7 14 14 N 1.30419 * 120.00019 * 17.87297 * 13 11 10 15 15 Si 1.86796 * 119.99768 * 197.87690 * 13 11 10 16 16 H 1.48506 * 109.47093 * 59.99788 * 15 13 11 17 17 H 1.48493 * 109.47314 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47308 * 300.00102 * 15 13 11 19 19 C 1.39373 * 119.57417 * 0.02562 * 5 4 3 20 20 C 1.37306 * 119.86134 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47339 * 269.98278 * 1 2 3 22 22 H 1.08999 * 109.46605 * 29.97913 * 1 2 3 23 23 H 1.08994 * 109.46958 * 149.97748 * 1 2 3 24 24 H 1.07996 * 119.92493 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.75969 * 179.97438 * 4 3 2 26 26 H 1.08009 * 119.99925 * 359.70457 * 8 7 6 27 27 H 0.97001 * 119.99787 * 174.32208 * 14 13 11 28 28 H 1.07997 * 119.76964 * 0.02782 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.2032 0.0000 4 6 3.5724 1.2099 0.0005 5 6 4.2892 0.0055 0.0016 6 16 6.0270 -0.2644 0.0100 7 6 5.8446 -2.0065 0.0028 8 6 6.9154 -2.9251 0.0035 9 8 6.6916 -4.1193 0.0036 10 6 4.5011 -2.3598 0.0023 11 6 4.0553 -3.6817 0.0033 12 1 4.5701 -4.4248 0.5943 13 6 2.9348 -4.0469 -0.7658 14 7 2.5255 -3.2712 -1.7310 15 14 2.0337 -5.6427 -0.4041 16 1 1.5196 -5.6161 0.9889 17 1 0.8974 -5.7944 -1.3478 18 1 2.9676 -6.7861 -0.5652 19 6 3.5994 -1.2055 0.0016 20 6 2.1907 -1.1908 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6545 2.1364 0.0004 25 1 4.1038 2.1501 0.0001 26 1 7.9343 -2.5668 0.0039 27 1 1.8059 -3.5604 -2.3136 28 1 1.6447 -2.1226 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396372234.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:10 Heat of formation + Delta-G solvation = -29.596633 kcal Electronic energy + Delta-G solvation = -15129.845455 eV Core-core repulsion = 12621.676111 eV Total energy + Delta-G solvation = -2508.169344 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40978 -39.16981 -36.72466 -34.83336 -32.78629 -30.69219 -28.97419 -27.75256 -25.18616 -22.87853 -22.29391 -20.63768 -18.89287 -18.20467 -17.15261 -16.96261 -16.11705 -15.57538 -15.13130 -15.01133 -14.78664 -14.45019 -14.41669 -14.01137 -13.58312 -13.26784 -13.12502 -12.99621 -12.79666 -12.29995 -12.13368 -11.77786 -11.44764 -11.26528 -10.98789 -10.21847 -10.00769 -9.19199 -9.00368 -8.39960 -6.65816 -0.15521 0.48876 1.09312 1.14924 1.28595 1.41137 1.50303 1.74981 2.08561 2.29017 2.72159 3.19154 3.86489 4.07388 4.15965 4.26297 4.52976 4.61022 4.83580 4.89277 4.90214 4.93150 5.19012 5.27311 5.35148 5.46864 5.53066 5.74158 5.84773 6.11906 6.21880 6.39080 6.54403 7.29620 7.89077 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.013765 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.265213 B = 2033.582772 C = 3601.980469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.112 4.112 5 C -0.132 4.132 6 S 0.014 5.986 7 C -0.490 4.490 8 C 0.380 3.620 9 O -0.564 6.564 10 C 0.132 3.868 11 C -0.392 4.392 12 H 0.088 0.912 13 C 0.039 3.961 14 N -0.760 5.760 15 Si 0.982 3.018 16 H -0.248 1.248 17 H -0.245 1.245 18 H -0.267 1.267 19 C -0.086 4.086 20 C -0.056 4.056 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.163 0.837 25 H 0.143 0.857 26 H 0.082 0.918 27 H 0.308 0.692 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 6.853 1.329 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.135 4.135 5 C -0.247 4.247 6 S 0.271 5.729 7 C -0.605 4.605 8 C 0.255 3.745 9 O -0.454 6.454 10 C 0.122 3.878 11 C -0.419 4.419 12 H 0.106 0.894 13 C -0.185 4.185 14 N -0.382 5.382 15 Si 0.800 3.200 16 H -0.172 1.172 17 H -0.168 1.168 18 H -0.191 1.191 19 C -0.094 4.094 20 C -0.076 4.076 21 H 0.098 0.902 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.181 0.819 25 H 0.161 0.839 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.695 7.225 1.172 9.919 hybrid contribution -0.758 -1.680 -0.109 1.847 sum -7.453 5.544 1.064 9.350 Atomic orbital electron populations 1.20720 0.88652 1.03296 1.02932 1.20100 0.97817 0.92330 1.02106 1.21181 0.92838 0.98410 0.99132 1.20798 0.94604 0.95064 1.03074 1.22939 0.97582 0.97478 1.06686 1.82333 1.01753 1.02227 1.86556 1.23006 0.98184 0.96211 1.43120 1.20969 0.92278 0.87278 0.73973 1.90402 1.88656 1.19983 1.46324 1.18167 0.89857 0.93242 0.86522 1.19867 1.07203 0.94908 1.19960 0.89374 1.27131 0.94796 1.03248 0.93353 1.69634 1.21550 1.37392 1.09629 0.85244 0.78019 0.75927 0.80773 1.17164 1.16784 1.19133 1.19663 0.94773 0.92007 1.02929 1.21003 0.91604 0.98182 0.96773 0.90249 0.89428 0.92347 0.81914 0.83905 0.90223 0.87960 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 10.00 71.24 0.71 -1.72 15 2 C -0.12 -4.10 5.87 -19.96 -0.12 -4.22 15 3 C -0.10 -2.93 9.68 22.20 0.21 -2.72 15 4 C -0.11 -3.95 10.07 22.55 0.23 -3.72 15 5 C -0.13 -5.92 6.42 23.01 0.15 -5.77 15 6 S 0.01 0.64 23.11 -56.49 -1.31 -0.66 15 7 C -0.49 -26.21 6.24 23.13 0.14 -26.06 15 8 C 0.38 19.87 11.42 68.52 0.78 20.65 15 9 O -0.56 -32.98 15.24 -3.73 -0.06 -33.04 15 10 C 0.13 7.28 5.40 -20.66 -0.11 7.17 15 11 C -0.39 -21.54 7.82 23.18 0.18 -21.36 15 12 H 0.09 5.13 6.67 -2.91 -0.02 5.11 15 13 C 0.04 1.86 4.12 85.51 0.35 2.21 15 14 N -0.76 -36.09 10.67 21.96 0.23 -35.85 15 15 Si 0.98 35.99 29.61 68.60 2.03 38.02 15 16 H -0.25 -8.73 7.11 99.48 0.71 -8.02 15 17 H -0.24 -7.85 7.11 99.48 0.71 -7.14 15 18 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 19 C -0.09 -4.25 5.54 -20.21 -0.11 -4.36 15 20 C -0.06 -2.42 8.02 22.70 0.18 -2.24 15 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.09 1.67 8.08 -2.39 -0.02 1.65 15 23 H 0.06 1.47 8.08 -2.39 -0.02 1.45 15 24 H 0.16 3.45 8.06 -2.91 -0.02 3.43 15 25 H 0.14 4.12 8.06 -2.91 -0.02 4.10 15 26 H 0.08 3.56 8.06 -2.91 -0.02 3.54 15 27 H 0.31 12.76 8.30 -92.71 -0.77 11.99 15 28 H 0.11 4.86 5.98 -2.91 -0.02 4.84 15 Total: -1.00 -65.27 259.96 4.69 -60.58 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.19 Total: 13.09 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 2.60 Total: -42.13 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.23 Total: -35.85 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.06 Total: -33.04 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -1.31 Total: -0.66 kcal Total: -65.27 4.69 -60.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396372234.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.983 kcal (2) G-P(sol) polarization free energy of solvation -65.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds