Wall clock time and date at job start Mon Mar 30 2020 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35016 * 119.79349 * 2 1 4 4 C 1.42333 * 120.88473 * 180.02562 * 3 2 1 5 5 C 1.39642 * 128.33675 * 179.97438 * 4 3 2 6 6 C 1.35654 * 115.39723 * 180.02562 * 5 4 3 7 7 C 1.41830 * 124.75823 * 180.02562 * 6 5 4 8 8 O 1.21395 * 119.99786 * 359.97438 * 7 6 5 9 9 S 1.75459 * 110.48843 * 359.97438 * 6 5 4 10 10 C 1.40605 * 118.97686 * 359.97438 * 4 3 2 11 11 C 1.39046 * 120.05312 * 359.97438 * 10 4 3 12 12 C 1.40336 * 120.02042 * 0.25882 * 11 10 4 13 13 C 1.40846 * 120.18265 * 179.72522 * 12 11 10 14 14 H 1.07991 * 120.00483 * 149.20317 * 13 12 11 15 15 C 1.40156 * 119.99489 * 329.20494 * 13 12 11 16 16 N 1.30707 * 119.99929 * 162.45416 * 15 13 12 17 17 Si 1.86803 * 119.99978 * 342.45143 * 15 13 12 18 18 H 1.48503 * 109.46878 * 95.36259 * 17 15 13 19 19 H 1.48495 * 109.47170 * 215.35941 * 17 15 13 20 20 H 1.48499 * 109.47306 * 335.36584 * 17 15 13 21 21 H 1.09003 * 109.47212 * 89.99627 * 1 2 3 22 22 H 1.08992 * 109.47340 * 209.99645 * 1 2 3 23 23 H 1.09000 * 109.46777 * 329.99929 * 1 2 3 24 24 H 1.07993 * 119.55492 * 0.02782 * 3 2 1 25 25 H 1.08006 * 122.30304 * 0.02726 * 5 4 3 26 26 H 1.08002 * 119.99891 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.99143 * 179.97438 * 11 10 4 28 28 H 0.96997 * 120.00122 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1779 1.1717 0.0000 4 6 3.6009 1.1988 -0.0005 5 6 4.4461 2.3104 -0.0011 6 6 5.7737 2.0319 -0.0021 7 6 6.8043 3.0063 -0.0023 8 8 6.5231 4.1872 -0.0020 9 16 6.0373 0.2972 -0.0016 10 6 4.3054 -0.0180 -0.0005 11 6 3.6127 -1.2237 0.0005 12 6 2.2094 -1.2272 -0.0039 13 6 1.5043 -2.4464 -0.0086 14 1 0.5370 -2.5128 0.4670 15 6 2.0581 -3.5737 -0.6307 16 7 1.5966 -4.7651 -0.3551 17 14 3.4557 -3.3733 -1.8539 18 1 4.7535 -3.5679 -1.1587 19 1 3.3166 -4.3826 -2.9341 20 1 3.4082 -2.0101 -2.4409 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5137 23 1 -0.3633 0.8900 0.5139 24 1 1.6273 2.1007 0.0005 25 1 4.0687 3.3224 -0.0008 26 1 7.8393 2.6976 -0.0027 27 1 4.1548 -2.1577 0.0001 28 1 1.9801 -5.5452 -0.7853 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396372642.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:45 Heat of formation + Delta-G solvation = -25.588465 kcal Electronic energy + Delta-G solvation = -14717.100281 eV Core-core repulsion = 12209.104744 eV Total energy + Delta-G solvation = -2507.995537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60866 -39.79542 -36.87653 -35.24774 -32.98087 -31.69803 -28.41087 -27.70277 -24.99659 -23.48682 -22.46983 -20.13855 -19.60472 -18.82946 -17.35550 -16.76239 -16.45696 -15.87279 -15.55193 -15.43845 -15.01110 -14.68744 -14.51282 -14.24077 -13.58842 -13.45050 -13.19121 -12.93092 -12.81758 -12.35947 -11.95105 -11.88978 -11.60727 -11.31252 -11.03552 -10.88435 -10.38373 -9.33477 -9.14890 -8.56074 -6.60882 -0.64701 0.65320 0.72264 0.88535 1.13829 1.22765 1.32483 1.41429 1.96160 2.02288 2.49007 3.24595 3.54775 3.98133 4.26884 4.35565 4.44694 4.55122 4.62847 4.83598 4.93445 4.99385 5.03057 5.11896 5.17039 5.41495 5.57217 5.65507 5.78153 5.98813 6.12032 6.46994 6.52197 6.59660 7.88102 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029369 B = 0.008065 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.159047 B = 3470.864817 C = 4241.942674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.159 4.159 3 C -0.041 4.041 4 C -0.229 4.229 5 C 0.018 3.982 6 C -0.365 4.365 7 C 0.421 3.579 8 O -0.518 6.518 9 S 0.075 5.925 10 C -0.062 4.062 11 C -0.263 4.263 12 C 0.102 3.898 13 C -0.424 4.424 14 H 0.092 0.908 15 C 0.059 3.941 16 N -0.803 5.803 17 Si 0.951 3.049 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.257 1.257 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.133 0.867 27 H 0.100 0.900 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 5.091 -1.343 6.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.160 4.160 3 C -0.061 4.061 4 C -0.234 4.234 5 C -0.013 4.013 6 C -0.480 4.480 7 C 0.286 3.714 8 O -0.399 6.399 9 S 0.339 5.661 10 C -0.179 4.179 11 C -0.290 4.290 12 C 0.096 3.904 13 C -0.451 4.451 14 H 0.110 0.890 15 C -0.163 4.163 16 N -0.426 5.426 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.180 1.180 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.149 0.851 27 H 0.118 0.882 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.924 4.585 -1.343 6.861 hybrid contribution -0.821 0.109 -0.325 0.889 sum 4.103 4.694 -1.668 6.454 Atomic orbital electron populations 1.20581 0.89852 1.02298 1.02043 1.19859 0.97189 0.92110 1.06884 1.20631 0.91091 0.97984 0.96417 1.18099 0.94920 0.91235 1.19107 1.20721 0.91661 0.99021 0.89915 1.23594 0.99111 0.98297 1.27033 1.22079 0.94197 0.85951 0.69150 1.90511 1.87935 1.21264 1.40168 1.83345 1.02533 0.99888 1.80369 1.22810 0.96578 0.97446 1.01022 1.20262 0.93992 0.94289 1.20462 1.17712 0.91000 0.93485 0.88235 1.19803 1.05054 0.92096 1.28146 0.88972 1.26815 0.98186 0.93866 0.97441 1.69601 1.38075 1.00216 1.34669 0.85645 0.78503 0.79761 0.78644 1.18812 1.19429 1.18034 0.91524 0.92404 0.90560 0.84276 0.83447 0.85055 0.88181 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 9.59 71.24 0.68 -2.34 15 2 C -0.16 -6.42 5.87 -19.83 -0.12 -6.54 15 3 C -0.04 -1.54 9.60 22.55 0.22 -1.32 15 4 C -0.23 -9.16 5.87 -21.34 -0.13 -9.28 15 5 C 0.02 0.65 9.78 22.01 0.22 0.87 15 6 C -0.37 -12.43 6.19 22.56 0.14 -12.29 15 7 C 0.42 12.43 11.46 68.71 0.79 13.22 15 8 O -0.52 -18.34 17.45 -3.39 -0.06 -18.39 15 9 S 0.08 2.67 23.22 -56.49 -1.31 1.36 15 10 C -0.06 -2.67 6.46 23.04 0.15 -2.52 15 11 C -0.26 -12.07 7.18 22.97 0.16 -11.90 15 12 C 0.10 4.70 5.08 -21.35 -0.11 4.60 15 13 C -0.42 -20.38 8.89 23.37 0.21 -20.17 15 14 H 0.09 4.56 6.52 -2.91 -0.02 4.54 15 15 C 0.06 2.76 5.41 85.33 0.46 3.22 15 16 N -0.80 -38.20 13.92 21.86 0.30 -37.90 15 17 Si 0.95 39.35 24.53 68.60 1.68 41.04 15 18 H -0.26 -10.68 6.73 99.48 0.67 -10.01 15 19 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 20 H -0.26 -11.25 6.86 99.48 0.68 -10.56 15 21 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.06 2.03 6.29 -2.39 -0.02 2.01 15 23 H 0.08 2.06 8.07 -2.39 -0.02 2.04 15 24 H 0.14 4.21 8.06 -2.91 -0.02 4.18 15 25 H 0.15 4.82 7.93 -2.91 -0.02 4.80 15 26 H 0.13 2.76 8.06 -2.91 -0.02 2.73 15 27 H 0.10 4.64 4.79 -2.91 -0.01 4.62 15 28 H 0.30 12.92 8.29 -92.71 -0.77 12.15 15 Total: -1.00 -53.77 257.34 4.42 -49.35 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.13 Total: 9.01 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 2.67 Total: -44.46 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.30 Total: -37.90 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.68 Total: 41.04 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.31 Total: 1.36 kcal Total: -53.77 4.42 -49.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396372642.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.758 kcal (2) G-P(sol) polarization free energy of solvation -53.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds