Wall clock time and date at job start Mon Mar 30 2020 05:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40683 * 119.99855 * 2 1 4 4 C 1.41136 * 119.78412 * 0.05132 * 3 2 1 5 5 H 1.08001 * 120.00102 * 27.45516 * 4 3 2 6 6 C 1.39872 * 119.99778 * 207.46303 * 4 3 2 7 7 N 1.30886 * 120.00118 * 15.44400 * 6 4 3 8 8 Si 1.86800 * 119.99810 * 195.44377 * 6 4 3 9 9 H 1.48502 * 109.47232 * 59.99813 * 8 6 4 10 10 H 1.48500 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47053 * 300.00120 * 8 6 4 12 12 C 1.40304 * 120.43430 * 180.02562 * 3 2 1 13 13 C 1.38727 * 121.07966 * 0.04442 * 12 3 2 14 14 S 1.76110 * 130.42289 * 179.97438 * 13 12 3 15 15 C 1.75492 * 91.51296 * 179.97438 * 14 13 12 16 16 C 1.32857 * 110.73438 * 0.02562 * 15 14 13 17 17 C 1.39804 * 115.90289 * 359.97438 * 16 15 14 18 18 C 1.38360 * 119.99307 * 180.02562 * 2 1 3 19 19 C 1.46711 * 120.15336 * 0.02562 * 18 2 1 20 20 O 1.21319 * 120.00487 * 354.36543 * 19 18 2 21 21 H 1.08995 * 109.47211 * 263.24252 * 1 2 3 22 22 H 1.09009 * 109.46679 * 23.23815 * 1 2 3 23 23 H 1.08997 * 109.47492 * 143.23918 * 1 2 3 24 24 H 0.96998 * 120.00021 * 180.02562 * 7 6 4 25 25 H 1.07996 * 119.46003 * 180.02562 * 12 3 2 26 26 H 1.08003 * 124.63677 * 179.73180 * 15 14 13 27 27 H 1.08001 * 122.04743 * 179.97438 * 16 15 14 28 28 H 1.08006 * 119.99761 * 174.36948 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2103 1.2184 0.0000 4 6 1.5000 2.4380 0.0011 5 1 0.5114 2.4867 0.4331 6 6 2.0764 3.5834 -0.5575 7 7 3.1205 3.4759 -1.3395 8 14 1.3561 5.2668 -0.1874 9 1 1.4073 5.5164 1.2756 10 1 2.1435 6.3085 -0.8946 11 1 -0.0547 5.3137 -0.6485 12 6 3.6133 1.2290 -0.0005 13 6 4.3385 0.0464 -0.0020 14 16 6.0783 -0.2263 -0.0036 15 6 5.8525 -1.9666 -0.0039 16 6 4.5598 -2.2731 -0.0035 17 6 3.6754 -1.1904 -0.0023 18 6 2.1986 -1.1983 -0.0005 19 6 1.4683 -2.4707 -0.0017 20 8 0.2595 -2.4765 0.1010 21 1 -0.3633 -0.1209 1.0205 22 1 -0.3633 0.9444 -0.4055 23 1 -0.3634 -0.8233 -0.6150 24 1 3.5204 4.2703 -1.7265 25 1 4.1373 2.1734 -0.0001 26 1 6.6547 -2.6897 -0.0090 27 1 4.2134 -3.2961 -0.0040 28 1 2.0069 -3.4024 -0.0939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396373352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:22 Heat of formation + Delta-G solvation = -1.244348 kcal Electronic energy + Delta-G solvation = -15000.043827 eV Core-core repulsion = 12493.103930 eV Total energy + Delta-G solvation = -2506.939897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10658 -37.43333 -35.37230 -33.22847 -30.77345 -29.47393 -26.95379 -24.95957 -23.29160 -22.09055 -20.38098 -18.80224 -17.56071 -16.72106 -15.55260 -15.16950 -14.66331 -14.04662 -13.82876 -13.60926 -13.28861 -12.93789 -12.48920 -12.09835 -11.98069 -11.51914 -11.34873 -11.22497 -11.15306 -10.78342 -10.45730 -10.28803 -9.86141 -9.66334 -9.23477 -8.67691 -8.52906 -7.40936 -7.03908 -6.85040 -4.56713 1.28113 2.18098 2.56245 2.86033 2.94283 2.96402 2.96785 3.14428 3.51302 3.73385 4.37404 4.97860 5.23740 5.55528 5.85740 6.02326 6.05188 6.24709 6.51286 6.60157 6.66876 6.77004 6.78199 6.87654 7.06950 7.12841 7.41858 7.55313 7.59969 7.81539 8.10755 8.21975 8.50670 8.53718 9.88676 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.009684 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.654556 B = 2890.541750 C = 4192.891337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.064 4.064 3 C 0.104 3.896 4 C -0.432 4.432 5 H 0.090 0.910 6 C 0.069 3.931 7 N -0.776 5.776 8 Si 0.915 3.085 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.262 1.262 12 C -0.137 4.137 13 C -0.081 4.081 14 S 0.013 5.987 15 C -0.259 4.259 16 C -0.084 4.084 17 C -0.167 4.167 18 C -0.150 4.150 19 C 0.380 3.620 20 O -0.476 6.476 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.288 0.712 25 H 0.125 0.875 26 H 0.147 0.853 27 H 0.121 0.879 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 -3.350 1.250 3.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.065 4.065 3 C 0.098 3.902 4 C -0.461 4.461 5 H 0.108 0.892 6 C -0.151 4.151 7 N -0.400 5.400 8 Si 0.739 3.261 9 H -0.185 1.185 10 H -0.200 1.200 11 H -0.186 1.186 12 C -0.163 4.163 13 C -0.196 4.196 14 S 0.274 5.726 15 C -0.393 4.393 16 C -0.115 4.115 17 C -0.173 4.173 18 C -0.153 4.153 19 C 0.243 3.757 20 O -0.354 6.354 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.143 0.857 26 H 0.165 0.835 27 H 0.139 0.861 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.486 -2.375 1.137 3.621 hybrid contribution -1.003 -0.119 -0.020 1.010 sum 1.483 -2.494 1.117 3.109 Atomic orbital electron populations 1.20906 0.91615 1.02285 1.01409 1.20381 0.95441 0.92015 0.98680 1.17252 0.91223 0.91668 0.90053 1.19682 1.02634 0.92421 1.31352 0.89193 1.26023 0.94406 1.01908 0.92752 1.69808 1.17801 1.32608 1.19754 0.86224 0.80022 0.79790 0.80082 1.18490 1.20034 1.18641 1.20553 0.93397 0.94717 1.07673 1.22293 0.94199 0.97395 1.05750 1.83716 1.05600 1.02019 1.81237 1.24635 0.99358 0.97641 1.17616 1.19585 0.92185 0.98364 1.01326 1.18535 0.91759 0.91438 1.15571 1.20957 0.91263 0.94283 1.08836 1.23698 0.88612 0.92803 0.70613 1.90426 1.17545 1.90424 1.36960 0.92428 0.91832 0.90782 0.90115 0.85718 0.83503 0.86097 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 8.23 36.00 0.30 -1.91 15 2 C -0.06 -1.48 5.96 -103.66 -0.62 -2.09 15 3 C 0.10 2.59 5.53 -107.10 -0.59 2.00 15 4 C -0.43 -10.40 8.03 -37.87 -0.30 -10.71 15 5 H 0.09 2.04 6.74 -52.49 -0.35 1.69 15 6 C 0.07 1.60 5.14 -17.34 -0.09 1.51 15 7 N -0.78 -18.68 10.97 55.54 0.61 -18.07 15 8 Si 0.92 17.22 29.59 -169.99 -5.03 12.19 15 9 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 10 H -0.28 -5.09 7.11 56.52 0.40 -4.69 15 11 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 12 C -0.14 -3.43 8.63 -38.62 -0.33 -3.76 15 13 C -0.08 -1.89 6.46 -38.61 -0.25 -2.14 15 14 S 0.01 0.26 23.30 -107.50 -2.50 -2.25 15 15 C -0.26 -4.59 11.11 28.88 0.32 -4.27 15 16 C -0.08 -1.55 9.76 -40.85 -0.40 -1.95 15 17 C -0.17 -3.62 6.03 -104.67 -0.63 -4.25 15 18 C -0.15 -3.24 6.06 -102.58 -0.62 -3.86 15 19 C 0.38 7.04 11.22 34.15 0.38 7.42 15 20 O -0.48 -9.65 14.09 5.52 0.08 -9.57 15 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.06 1.29 6.40 -51.92 -0.33 0.96 15 23 H 0.07 1.52 5.81 -51.93 -0.30 1.22 15 24 H 0.29 6.31 8.30 -40.82 -0.34 5.97 15 25 H 0.13 3.21 6.18 -52.49 -0.32 2.89 15 26 H 0.15 2.12 8.06 -52.48 -0.42 1.70 15 27 H 0.12 1.82 7.43 -52.49 -0.39 1.43 15 28 H 0.08 1.22 7.34 -52.48 -0.39 0.83 15 LS Contribution 255.81 15.07 3.86 3.86 Total: -1.00 -26.18 255.81 -7.89 -34.08 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -2.07 Total: 3.78 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.84 Total: -24.01 kcal Atomic # 7 Polarization: -18.68 SS G_CDS: 0.61 Total: -18.07 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.50 Total: -2.25 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.18 -7.89 -34.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396373352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.831 kcal (2) G-P(sol) polarization free energy of solvation -26.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds