Wall clock time and date at job start Mon Mar 30 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37356 * 119.76511 * 2 1 4 4 C 1.38684 * 120.27388 * 180.02562 * 3 2 1 5 5 C 1.37499 * 120.14358 * 0.02562 * 4 3 2 6 6 C 1.40113 * 120.47974 * 359.97438 * 5 4 3 7 7 S 1.75863 * 129.58788 * 180.02562 * 6 5 4 8 8 C 1.75166 * 92.85021 * 179.97438 * 7 6 5 9 9 C 1.41093 * 124.63822 * 180.02562 * 8 7 6 10 10 O 1.21504 * 119.99609 * 173.64545 * 9 8 7 11 11 C 1.38914 * 110.71594 * 359.75652 * 8 7 6 12 12 C 1.39511 * 123.36776 * 180.28683 * 11 8 7 13 13 H 1.07999 * 120.00301 * 123.09100 * 12 11 8 14 14 C 1.40721 * 119.99978 * 303.09623 * 12 11 8 15 15 N 1.30422 * 120.00229 * 166.99082 * 14 12 11 16 16 Si 1.86805 * 119.99798 * 346.99039 * 14 12 11 17 17 H 1.48496 * 109.47021 * 88.43631 * 16 14 12 18 18 H 1.48500 * 109.47076 * 208.43630 * 16 14 12 19 19 H 1.48504 * 109.47025 * 328.43434 * 16 14 12 20 20 C 1.39411 * 119.57787 * 359.97438 * 6 5 4 21 21 H 1.09005 * 109.46749 * 265.45870 * 1 2 3 22 22 H 1.08994 * 109.46908 * 25.46219 * 1 2 3 23 23 H 1.09004 * 109.46747 * 145.46293 * 1 2 3 24 24 H 1.08000 * 119.86243 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.92768 * 179.97438 * 4 3 2 26 26 H 1.07997 * 119.75811 * 179.97438 * 5 4 3 27 27 H 1.07997 * 120.00251 * 353.63464 * 9 8 7 28 28 H 0.97007 * 119.99512 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1923 0.0000 4 6 3.5757 1.2047 -0.0005 5 6 4.2767 0.0218 -0.0016 6 6 3.6003 -1.2052 -0.0016 7 16 4.2461 -2.8410 -0.0022 8 6 2.6508 -3.5645 -0.0010 9 6 2.3999 -4.9529 -0.0004 10 8 1.2628 -5.3646 0.1169 11 6 1.6666 -2.5841 0.0054 12 6 0.3008 -2.8680 0.0136 13 1 -0.3271 -2.4783 0.8011 14 6 -0.2589 -3.6624 -1.0043 15 7 -1.4655 -4.1391 -0.8705 16 14 0.7265 -4.0340 -2.5472 17 1 1.5376 -5.2594 -2.3333 18 1 -0.2008 -4.2470 -3.6874 19 1 1.6259 -2.8911 -2.8475 20 6 2.2063 -1.2225 0.0000 21 1 -0.3633 -0.0814 1.0245 22 1 -0.3633 0.9278 -0.4418 23 1 -0.3633 -0.8466 -0.5827 24 1 1.6429 2.1241 0.0004 25 1 4.1062 2.1454 -0.0010 26 1 5.3566 0.0386 -0.0024 27 1 3.2185 -5.6496 -0.1043 28 1 -1.8513 -4.6863 -1.5724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396375718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:29 Heat of formation + Delta-G solvation = 3.493961 kcal Electronic energy + Delta-G solvation = -15423.526927 eV Core-core repulsion = 12916.792498 eV Total energy + Delta-G solvation = -2506.734428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02949 -37.53917 -34.55914 -32.89287 -32.10699 -29.15463 -27.12169 -26.18790 -23.01043 -22.15807 -20.15209 -19.06951 -16.91260 -16.76731 -15.48547 -15.11915 -14.79537 -14.29122 -13.58891 -13.40879 -13.06886 -12.95091 -12.79268 -12.41989 -11.94919 -11.78648 -11.62175 -11.25295 -11.08906 -10.48078 -10.36693 -10.19714 -9.82570 -9.64832 -9.30809 -8.46259 -8.21608 -7.63801 -7.14406 -6.72295 -4.67157 1.30991 1.83779 2.58853 2.65616 3.09644 3.16186 3.28571 3.35250 3.95431 4.12642 4.32755 4.84489 5.33707 5.38319 5.47362 5.76737 5.89933 5.93301 6.11594 6.33466 6.36548 6.54782 6.72128 6.82725 6.90401 6.97803 7.11618 7.22321 7.48889 7.65392 8.00703 8.21174 8.50308 9.05679 9.86157 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.012240 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.999405 B = 2287.000556 C = 2990.341787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.030 4.030 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.099 4.099 7 S 0.004 5.996 8 C -0.437 4.437 9 C 0.383 3.617 10 O -0.487 6.487 11 C 0.125 3.875 12 C -0.374 4.374 13 H 0.107 0.893 14 C 0.116 3.884 15 N -0.761 5.761 16 Si 0.908 3.092 17 H -0.256 1.256 18 H -0.283 1.283 19 H -0.254 1.254 20 C -0.076 4.076 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.050 0.950 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 6.964 -1.304 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.032 4.032 3 C -0.171 4.171 4 C -0.126 4.126 5 C -0.140 4.140 6 C -0.215 4.215 7 S 0.264 5.736 8 C -0.552 4.552 9 C 0.251 3.749 10 O -0.370 6.370 11 C 0.115 3.885 12 C -0.402 4.402 13 H 0.125 0.875 14 C -0.110 4.110 15 N -0.382 5.382 16 Si 0.732 3.268 17 H -0.180 1.180 18 H -0.210 1.210 19 H -0.177 1.177 20 C -0.084 4.084 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.116 0.884 24 H 0.135 0.865 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.066 0.934 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.110 5.882 -1.292 8.579 hybrid contribution -0.699 0.353 -0.638 1.010 sum 5.411 6.235 -1.931 8.478 Atomic orbital electron populations 1.21059 0.91010 1.02984 1.02747 1.19843 0.96167 0.91031 0.96141 1.20701 0.94104 0.96903 1.05407 1.20782 0.94184 0.96895 1.00775 1.20395 0.98757 0.90297 1.04602 1.22615 0.96773 0.97409 1.04673 1.82909 1.10478 0.95475 1.84691 1.22958 0.93119 0.99143 1.39995 1.20599 0.91098 0.88129 0.75037 1.90544 1.25198 1.80435 1.40849 1.17713 0.93803 0.87282 0.89731 1.19048 0.91694 1.21710 1.07708 0.87513 1.26099 0.94420 0.89924 1.00601 1.69418 1.15373 1.20353 1.33103 0.86367 0.80430 0.81491 0.78526 1.18019 1.20958 1.17720 1.19750 0.91601 0.94536 1.02538 0.91444 0.93072 0.88442 0.86457 0.86388 0.86709 0.93408 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.83 36.01 0.32 -1.88 15 2 C -0.03 -0.59 5.93 -103.96 -0.62 -1.20 15 3 C -0.15 -2.48 9.63 -39.74 -0.38 -2.86 15 4 C -0.11 -1.66 10.03 -39.69 -0.40 -2.05 15 5 C -0.12 -2.03 10.07 -39.15 -0.39 -2.42 15 6 C -0.10 -2.08 6.42 -38.44 -0.25 -2.33 15 7 S 0.00 0.09 23.11 -107.50 -2.48 -2.39 15 8 C -0.44 -10.62 5.11 -38.25 -0.20 -10.81 15 9 C 0.38 9.38 9.25 31.81 0.29 9.67 15 10 O -0.49 -13.35 13.11 5.36 0.07 -13.28 15 11 C 0.12 3.11 4.39 -105.86 -0.46 2.64 15 12 C -0.37 -9.64 5.76 -38.17 -0.22 -9.86 15 13 H 0.11 2.83 7.52 -52.49 -0.39 2.43 15 14 C 0.12 2.99 3.83 -17.21 -0.07 2.92 15 15 N -0.76 -19.77 13.91 55.59 0.77 -18.99 15 16 Si 0.91 21.58 24.65 -169.99 -4.19 17.38 15 17 H -0.26 -6.23 6.11 56.52 0.35 -5.89 15 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 19 H -0.25 -6.11 7.11 56.52 0.40 -5.70 15 20 C -0.08 -1.71 5.97 -105.17 -0.63 -2.34 15 21 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 22 H 0.05 0.77 8.04 -51.93 -0.42 0.35 15 23 H 0.10 2.00 5.72 -51.93 -0.30 1.70 15 24 H 0.12 1.59 8.05 -52.49 -0.42 1.17 15 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.05 1.05 8.06 -52.49 -0.42 0.63 15 28 H 0.29 6.95 8.29 -40.82 -0.34 6.62 15 LS Contribution 250.23 15.07 3.77 3.77 Total: -1.00 -28.13 250.23 -7.47 -35.61 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -2.41 Total: -1.56 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -3.00 Total: -20.53 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.77 Total: -18.99 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.07 Total: -13.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.19 Total: 17.38 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.48 Total: -2.39 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.13 -7.47 -35.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.100 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds