Wall clock time and date at job start Mon Mar 30 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37356 * 119.76511 * 2 1 4 4 C 1.38684 * 120.27388 * 180.02562 * 3 2 1 5 5 C 1.37499 * 120.14358 * 0.02562 * 4 3 2 6 6 C 1.40113 * 120.47974 * 359.97438 * 5 4 3 7 7 S 1.75863 * 129.58788 * 180.02562 * 6 5 4 8 8 C 1.75166 * 92.85021 * 179.97438 * 7 6 5 9 9 C 1.41093 * 124.63822 * 180.02562 * 8 7 6 10 10 O 1.21504 * 119.99609 * 173.64545 * 9 8 7 11 11 C 1.38914 * 110.71594 * 359.75652 * 8 7 6 12 12 C 1.39511 * 123.36776 * 180.28683 * 11 8 7 13 13 H 1.07999 * 120.00301 * 123.09100 * 12 11 8 14 14 C 1.40721 * 119.99978 * 303.09623 * 12 11 8 15 15 N 1.30422 * 120.00229 * 166.99082 * 14 12 11 16 16 Si 1.86805 * 119.99798 * 346.99039 * 14 12 11 17 17 H 1.48496 * 109.47021 * 88.43631 * 16 14 12 18 18 H 1.48500 * 109.47076 * 208.43630 * 16 14 12 19 19 H 1.48504 * 109.47025 * 328.43434 * 16 14 12 20 20 C 1.39411 * 119.57787 * 359.97438 * 6 5 4 21 21 H 1.09005 * 109.46749 * 265.45870 * 1 2 3 22 22 H 1.08994 * 109.46908 * 25.46219 * 1 2 3 23 23 H 1.09004 * 109.46747 * 145.46293 * 1 2 3 24 24 H 1.08000 * 119.86243 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.92768 * 179.97438 * 4 3 2 26 26 H 1.07997 * 119.75811 * 179.97438 * 5 4 3 27 27 H 1.07997 * 120.00251 * 353.63464 * 9 8 7 28 28 H 0.97007 * 119.99512 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1923 0.0000 4 6 3.5757 1.2047 -0.0005 5 6 4.2767 0.0218 -0.0016 6 6 3.6003 -1.2052 -0.0016 7 16 4.2461 -2.8410 -0.0022 8 6 2.6508 -3.5645 -0.0010 9 6 2.3999 -4.9529 -0.0004 10 8 1.2628 -5.3646 0.1169 11 6 1.6666 -2.5841 0.0054 12 6 0.3008 -2.8680 0.0136 13 1 -0.3271 -2.4783 0.8011 14 6 -0.2589 -3.6624 -1.0043 15 7 -1.4655 -4.1391 -0.8705 16 14 0.7265 -4.0340 -2.5472 17 1 1.5376 -5.2594 -2.3333 18 1 -0.2008 -4.2470 -3.6874 19 1 1.6259 -2.8911 -2.8475 20 6 2.2063 -1.2225 0.0000 21 1 -0.3633 -0.0814 1.0245 22 1 -0.3633 0.9278 -0.4418 23 1 -0.3633 -0.8466 -0.5827 24 1 1.6429 2.1241 0.0004 25 1 4.1062 2.1454 -0.0010 26 1 5.3566 0.0386 -0.0024 27 1 3.2185 -5.6496 -0.1043 28 1 -1.8513 -4.6863 -1.5724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396375718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:29 Heat of formation + Delta-G solvation = -12.780764 kcal Electronic energy + Delta-G solvation = -15424.232652 eV Core-core repulsion = 12916.792498 eV Total energy + Delta-G solvation = -2507.440153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59716 -39.40474 -36.34102 -34.68292 -33.54489 -30.75726 -28.94832 -27.69602 -24.71065 -23.68904 -21.70650 -20.89230 -18.73804 -18.39027 -17.18497 -16.86593 -16.35044 -15.81241 -15.35384 -15.08716 -15.00933 -14.64021 -14.50399 -13.86485 -13.59919 -13.40159 -13.24932 -12.81138 -12.76372 -12.20590 -11.96768 -11.89174 -11.44800 -11.31240 -11.19167 -10.17840 -9.98967 -9.25982 -9.03182 -8.37897 -6.57016 -0.36184 0.42169 0.93142 1.01541 1.19454 1.25120 1.40124 1.55934 2.05910 2.25869 2.73828 3.03292 3.76402 4.02412 4.14117 4.24816 4.49637 4.54205 4.69929 4.90794 4.99956 5.03207 5.09192 5.14870 5.42324 5.50561 5.53845 5.65027 5.80357 6.09169 6.15973 6.36019 6.60994 7.13812 8.01608 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.012240 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.999405 B = 2287.000556 C = 2990.341787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.140 4.140 4 C -0.085 4.085 5 C -0.118 4.118 6 C -0.120 4.120 7 S 0.037 5.963 8 C -0.460 4.460 9 C 0.378 3.622 10 O -0.521 6.521 11 C 0.124 3.876 12 C -0.404 4.404 13 H 0.082 0.918 14 C 0.096 3.904 15 N -0.799 5.799 16 Si 0.938 3.062 17 H -0.266 1.266 18 H -0.262 1.262 19 H -0.261 1.261 20 C -0.122 4.122 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.156 0.844 25 H 0.169 0.831 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 9.798 -1.762 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.049 4.049 3 C -0.160 4.160 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.235 4.235 7 S 0.297 5.703 8 C -0.575 4.575 9 C 0.248 3.752 10 O -0.406 6.406 11 C 0.114 3.886 12 C -0.433 4.433 13 H 0.100 0.900 14 C -0.127 4.127 15 N -0.423 5.423 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.186 1.186 19 H -0.185 1.185 20 C -0.129 4.129 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.084 0.916 24 H 0.174 0.826 25 H 0.186 0.814 26 H 0.163 0.837 27 H 0.101 0.899 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.515 8.723 -1.755 12.316 hybrid contribution -1.242 -0.312 -0.403 1.342 sum 7.273 8.411 -2.158 11.327 Atomic orbital electron populations 1.20977 0.90786 1.03318 1.02285 1.20152 0.96750 0.91396 0.96586 1.21193 0.95001 0.96986 1.02848 1.21398 0.93883 0.98212 0.96975 1.20864 1.00464 0.89404 1.03501 1.22954 0.96437 0.98514 1.05579 1.82555 1.07448 0.95552 1.84737 1.23330 0.95700 0.99421 1.39033 1.21195 0.91312 0.89005 0.73693 1.90537 1.26797 1.81087 1.42215 1.18061 0.93530 0.89115 0.87936 1.18856 0.92222 1.23740 1.08447 0.90010 1.26462 0.94788 0.89574 1.01844 1.69436 1.16367 1.22285 1.34173 0.85936 0.79887 0.80323 0.77799 1.19130 1.18646 1.18464 1.19859 0.92812 0.94435 1.05838 0.91795 0.89700 0.91605 0.82612 0.81370 0.83698 0.89933 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 8.83 71.24 0.63 -3.58 15 2 C -0.05 -1.76 5.93 -19.44 -0.12 -1.88 15 3 C -0.14 -3.95 9.63 22.17 0.21 -3.73 15 4 C -0.08 -2.13 10.03 22.20 0.22 -1.91 15 5 C -0.12 -3.58 10.07 22.55 0.23 -3.36 15 6 C -0.12 -4.75 6.42 23.01 0.15 -4.60 15 7 S 0.04 1.50 23.11 -56.49 -1.31 0.19 15 8 C -0.46 -22.48 5.11 23.13 0.12 -22.36 15 9 C 0.38 18.67 9.25 68.52 0.63 19.30 15 10 O -0.52 -29.42 13.11 -3.73 -0.05 -29.46 15 11 C 0.12 6.32 4.39 -20.67 -0.09 6.23 15 12 C -0.40 -21.93 5.76 23.18 0.13 -21.80 15 13 H 0.08 4.69 7.52 -2.91 -0.02 4.67 15 14 C 0.10 5.17 3.83 85.51 0.33 5.49 15 15 N -0.80 -43.60 13.91 21.96 0.31 -43.30 15 16 Si 0.94 45.03 24.65 68.60 1.69 46.72 15 17 H -0.27 -13.10 6.11 99.48 0.61 -12.49 15 18 H -0.26 -11.42 7.11 99.48 0.71 -10.72 15 19 H -0.26 -12.61 7.11 99.48 0.71 -11.90 15 20 C -0.12 -5.41 5.97 -20.22 -0.12 -5.54 15 21 H 0.06 2.27 8.14 -2.38 -0.02 2.25 15 22 H 0.08 2.37 8.04 -2.39 -0.02 2.35 15 23 H 0.07 2.82 5.72 -2.38 -0.01 2.80 15 24 H 0.16 3.22 8.05 -2.91 -0.02 3.20 15 25 H 0.17 2.66 8.06 -2.91 -0.02 2.64 15 26 H 0.15 3.49 8.06 -2.91 -0.02 3.47 15 27 H 0.08 3.50 8.06 -2.91 -0.02 3.48 15 28 H 0.30 14.81 8.29 -92.70 -0.77 14.04 15 Total: -1.00 -63.84 250.23 4.05 -59.79 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.09 Total: 3.78 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 2.33 Total: -37.72 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.31 Total: -43.30 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.05 Total: -29.46 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.69 Total: 46.72 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.31 Total: 0.19 kcal Total: -63.84 4.05 -59.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.008 kcal (2) G-P(sol) polarization free energy of solvation -63.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds