Wall clock time and date at job start Mon Mar 30 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36065 * 119.73919 * 2 1 4 4 C 1.38926 * 120.48800 * 180.02562 * 3 2 1 5 5 C 1.37530 * 120.24061 * 0.02562 * 4 3 2 6 6 C 1.39992 * 120.33597 * 359.97438 * 5 4 3 7 7 S 1.75836 * 129.75894 * 180.34126 * 6 5 4 8 8 C 1.75193 * 92.76532 * 180.02562 * 7 6 5 9 9 C 1.39238 * 124.64850 * 179.90699 * 8 7 6 10 10 H 1.07997 * 120.00420 * 179.69733 * 9 8 7 11 11 C 1.40798 * 119.99547 * 359.42721 * 9 8 7 12 12 N 1.30380 * 120.00197 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99658 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46956 * 90.00254 * 13 11 9 15 15 H 1.48505 * 109.47171 * 210.00289 * 13 11 9 16 16 H 1.48505 * 109.47245 * 330.00145 * 13 11 9 17 17 C 1.39076 * 110.70448 * 359.64977 * 8 7 6 18 18 C 1.41341 * 123.28907 * 180.24486 * 17 8 7 19 19 O 1.21470 * 120.00151 * 354.03950 * 18 17 8 20 20 C 1.39937 * 119.47829 * 0.02562 * 6 5 4 21 21 H 1.09004 * 109.46755 * 261.00801 * 1 2 3 22 22 H 1.09000 * 109.47370 * 21.01628 * 1 2 3 23 23 H 1.09000 * 109.46803 * 141.01305 * 1 2 3 24 24 H 1.08002 * 119.76089 * 0.02562 * 3 2 1 25 25 H 1.08004 * 119.88460 * 180.02562 * 4 3 2 26 26 H 1.07999 * 119.83741 * 179.97438 * 5 4 3 27 27 H 0.96994 * 119.99389 * 179.97438 * 12 11 9 28 28 H 1.07995 * 119.99926 * 174.03420 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1820 1.1814 0.0000 4 6 3.5711 1.1996 -0.0005 5 6 4.2793 0.0206 -0.0016 6 6 3.6075 -1.2076 -0.0016 7 16 4.2538 -2.8429 0.0052 8 6 2.6575 -3.5647 -0.0009 9 6 2.4082 -4.9346 -0.0009 10 1 1.3914 -5.2984 0.0000 11 6 3.4818 -5.8455 -0.0079 12 7 4.7094 -5.4063 -0.0139 13 14 3.1473 -7.6833 -0.0071 14 1 3.0504 -8.1693 -1.4070 15 1 4.2557 -8.3879 0.6859 16 1 1.8699 -7.9537 0.7003 17 6 1.6735 -2.5819 0.0000 18 6 0.2897 -2.8697 0.0009 19 8 -0.0920 -4.0177 -0.1084 20 6 2.2083 -1.2273 -0.0011 21 1 -0.3633 -0.1606 1.0151 22 1 -0.3634 0.9593 -0.3685 23 1 -0.3633 -0.7988 -0.6466 24 1 1.6339 2.1120 0.0004 25 1 4.0970 2.1430 -0.0001 26 1 5.3590 0.0423 -0.0024 27 1 5.4489 -6.0339 -0.0183 28 1 -0.4283 -2.0690 0.0988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396375873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:20 Heat of formation + Delta-G solvation = -23.222828 kcal Electronic energy + Delta-G solvation = -15005.657530 eV Core-core repulsion = 12497.764575 eV Total energy + Delta-G solvation = -2507.892955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.74328 -37.16740 -34.88838 -33.02031 -32.05828 -29.27420 -26.63770 -26.11064 -23.36545 -21.27651 -20.81380 -18.60265 -17.88378 -15.98670 -15.65678 -15.06053 -14.50809 -14.09800 -13.44036 -13.39263 -13.15217 -12.54366 -12.48273 -12.23167 -11.85708 -11.74977 -11.65936 -11.55984 -11.07127 -10.63307 -10.44461 -10.37864 -10.02755 -9.46820 -9.34796 -8.32598 -7.81528 -7.62061 -7.46670 -6.51709 -5.06420 1.98188 2.24146 2.48969 2.75857 2.84945 2.98645 3.09326 3.47049 3.67217 4.08653 4.48968 5.06767 5.57320 5.62918 5.84542 5.92051 5.94499 6.17072 6.22277 6.39421 6.44446 6.46708 6.76021 6.97653 7.04648 7.26824 7.30824 7.46958 7.54437 7.87165 7.94956 8.08297 8.22428 9.27972 9.29808 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.008868 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.129170 B = 3156.492808 C = 4057.996698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.111 4.111 4 C -0.175 4.175 5 C -0.069 4.069 6 C -0.234 4.234 7 S 0.125 5.875 8 C 0.076 3.924 9 C -0.324 4.324 10 H 0.141 0.859 11 C 0.045 3.955 12 N -0.741 5.741 13 Si 0.946 3.054 14 H -0.258 1.258 15 H -0.268 1.268 16 H -0.248 1.248 17 C -0.420 4.420 18 C 0.369 3.631 19 O -0.542 6.542 20 C 0.035 3.965 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.308 0.692 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 3.147 0.270 3.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.131 4.131 4 C -0.195 4.195 5 C -0.092 4.092 6 C -0.348 4.348 7 S 0.385 5.615 8 C -0.045 4.045 9 C -0.356 4.356 10 H 0.159 0.841 11 C -0.182 4.182 12 N -0.365 5.365 13 Si 0.768 3.232 14 H -0.182 1.182 15 H -0.193 1.193 16 H -0.171 1.171 17 C -0.427 4.427 18 C 0.243 3.757 19 O -0.430 6.430 20 C 0.028 3.972 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.201 1.992 0.229 2.977 hybrid contribution -1.121 0.265 0.008 1.152 sum 1.080 2.257 0.237 2.513 Atomic orbital electron populations 1.20997 0.92665 1.01552 1.01667 1.19296 0.94933 0.91863 1.05399 1.20244 0.94136 0.96315 1.02448 1.20550 0.94025 0.96662 1.08285 1.20299 0.98025 0.90650 1.00204 1.23721 0.97621 1.01231 1.12199 1.84788 1.07047 0.89484 1.80167 1.21646 0.93897 0.96135 0.92807 1.20624 0.97402 0.89325 1.28244 0.84149 1.26904 0.93946 1.05512 0.91836 1.68530 1.00788 1.39905 1.27292 0.85608 0.80336 0.76918 0.80385 1.18222 1.19286 1.17142 1.18974 0.95819 0.89838 1.38091 1.21663 0.89677 0.90494 0.73835 1.90308 1.82680 1.25034 1.44994 1.18902 0.91496 0.92263 0.94500 0.92035 0.92852 0.90874 0.87572 0.87470 0.87678 0.87766 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 8.44 36.01 0.30 -1.61 15 2 C -0.11 -2.32 5.91 -104.22 -0.62 -2.93 15 3 C -0.11 -2.05 9.56 -40.11 -0.38 -2.43 15 4 C -0.18 -3.22 10.03 -39.59 -0.40 -3.61 15 5 C -0.07 -1.41 10.07 -39.18 -0.39 -1.80 15 6 C -0.23 -5.48 6.44 -38.29 -0.25 -5.72 15 7 S 0.13 3.01 20.01 -107.50 -2.15 0.86 15 8 C 0.08 2.00 6.14 -38.90 -0.24 1.76 15 9 C -0.32 -8.25 8.72 -38.24 -0.33 -8.59 15 10 H 0.14 3.72 5.34 -52.49 -0.28 3.44 15 11 C 0.05 1.01 5.51 -17.20 -0.09 0.91 15 12 N -0.74 -16.48 10.54 55.59 0.59 -15.89 15 13 Si 0.95 16.85 29.57 -169.99 -5.03 11.82 15 14 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 15 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 16 H -0.25 -4.53 7.11 56.52 0.40 -4.13 15 17 C -0.42 -10.75 5.90 -105.45 -0.62 -11.37 15 18 C 0.37 9.00 10.37 31.91 0.33 9.34 15 19 O -0.54 -14.49 14.77 5.39 0.08 -14.41 15 20 C 0.04 0.84 5.98 -105.13 -0.63 0.21 15 21 H 0.06 0.99 8.06 -51.93 -0.42 0.57 15 22 H 0.05 0.76 7.97 -51.93 -0.41 0.34 15 23 H 0.07 1.29 5.42 -51.93 -0.28 1.00 15 24 H 0.11 1.62 8.00 -52.49 -0.42 1.20 15 25 H 0.11 1.63 8.06 -52.48 -0.42 1.20 15 26 H 0.11 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.31 5.98 8.29 -40.82 -0.34 5.64 15 28 H 0.07 1.35 4.33 -52.49 -0.23 1.12 15 LS Contribution 252.78 15.07 3.81 3.81 Total: -1.00 -27.97 252.78 -8.04 -36.01 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.02 Total: 3.67 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -3.32 Total: -25.86 kcal Atomic # 7 Polarization: -16.48 SS G_CDS: 0.59 Total: -15.89 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.15 Total: 0.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.97 -8.04 -36.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.785 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds