Wall clock time and date at job start Mon Mar 30 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36065 * 119.73919 * 2 1 4 4 C 1.38926 * 120.48800 * 180.02562 * 3 2 1 5 5 C 1.37530 * 120.24061 * 0.02562 * 4 3 2 6 6 C 1.39992 * 120.33597 * 359.97438 * 5 4 3 7 7 S 1.75836 * 129.75894 * 180.34126 * 6 5 4 8 8 C 1.75193 * 92.76532 * 180.02562 * 7 6 5 9 9 C 1.39238 * 124.64850 * 179.90699 * 8 7 6 10 10 H 1.07997 * 120.00420 * 179.69733 * 9 8 7 11 11 C 1.40798 * 119.99547 * 359.42721 * 9 8 7 12 12 N 1.30380 * 120.00197 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99658 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46956 * 90.00254 * 13 11 9 15 15 H 1.48505 * 109.47171 * 210.00289 * 13 11 9 16 16 H 1.48505 * 109.47245 * 330.00145 * 13 11 9 17 17 C 1.39076 * 110.70448 * 359.64977 * 8 7 6 18 18 C 1.41341 * 123.28907 * 180.24486 * 17 8 7 19 19 O 1.21470 * 120.00151 * 354.03950 * 18 17 8 20 20 C 1.39937 * 119.47829 * 0.02562 * 6 5 4 21 21 H 1.09004 * 109.46755 * 261.00801 * 1 2 3 22 22 H 1.09000 * 109.47370 * 21.01628 * 1 2 3 23 23 H 1.09000 * 109.46803 * 141.01305 * 1 2 3 24 24 H 1.08002 * 119.76089 * 0.02562 * 3 2 1 25 25 H 1.08004 * 119.88460 * 180.02562 * 4 3 2 26 26 H 1.07999 * 119.83741 * 179.97438 * 5 4 3 27 27 H 0.96994 * 119.99389 * 179.97438 * 12 11 9 28 28 H 1.07995 * 119.99926 * 174.03420 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1820 1.1814 0.0000 4 6 3.5711 1.1996 -0.0005 5 6 4.2793 0.0206 -0.0016 6 6 3.6075 -1.2076 -0.0016 7 16 4.2538 -2.8429 0.0052 8 6 2.6575 -3.5647 -0.0009 9 6 2.4082 -4.9346 -0.0009 10 1 1.3914 -5.2984 0.0000 11 6 3.4818 -5.8455 -0.0079 12 7 4.7094 -5.4063 -0.0139 13 14 3.1473 -7.6833 -0.0071 14 1 3.0504 -8.1693 -1.4070 15 1 4.2557 -8.3879 0.6859 16 1 1.8699 -7.9537 0.7003 17 6 1.6735 -2.5819 0.0000 18 6 0.2897 -2.8697 0.0009 19 8 -0.0920 -4.0177 -0.1084 20 6 2.2083 -1.2273 -0.0011 21 1 -0.3633 -0.1606 1.0151 22 1 -0.3634 0.9593 -0.3685 23 1 -0.3633 -0.7988 -0.6466 24 1 1.6339 2.1120 0.0004 25 1 4.0970 2.1430 -0.0001 26 1 5.3590 0.0423 -0.0024 27 1 5.4489 -6.0339 -0.0183 28 1 -0.4283 -2.0690 0.0988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396375873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:20 Heat of formation + Delta-G solvation = -38.058057 kcal Electronic energy + Delta-G solvation = -15006.300834 eV Core-core repulsion = 12497.764575 eV Total energy + Delta-G solvation = -2508.536259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41583 -38.97485 -36.67694 -34.74220 -33.55878 -31.00228 -28.28361 -27.72549 -25.13604 -22.92078 -22.41454 -20.36987 -19.70230 -17.66461 -17.27998 -16.73969 -16.16194 -15.67515 -15.14316 -15.05751 -14.80749 -14.18003 -14.12615 -13.90067 -13.52901 -13.27321 -13.26703 -13.06876 -12.67286 -12.12725 -12.07731 -11.97658 -11.61812 -11.12038 -11.09846 -9.97154 -9.69320 -9.34671 -9.16455 -8.29626 -6.92045 0.30516 0.62415 0.82013 1.25942 1.30924 1.45014 1.49182 1.79578 2.06658 2.31867 2.79622 3.29123 4.11964 4.15946 4.21910 4.40866 4.54320 4.66357 4.73066 4.86873 4.90810 5.07043 5.15137 5.36329 5.46493 5.57449 5.67706 5.74687 5.89983 6.08637 6.20835 6.36236 6.40756 7.41231 7.64373 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030523 B = 0.008868 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.129170 B = 3156.492808 C = 4057.996698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.159 4.159 5 C -0.085 4.085 6 C -0.258 4.258 7 S 0.113 5.887 8 C 0.040 3.960 9 C -0.352 4.352 10 H 0.122 0.878 11 C 0.013 3.987 12 N -0.754 5.754 13 Si 1.013 2.987 14 H -0.251 1.251 15 H -0.243 1.243 16 H -0.260 1.260 17 C -0.451 4.451 18 C 0.360 3.640 19 O -0.578 6.578 20 C 0.002 3.998 21 H 0.069 0.931 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.149 0.851 25 H 0.150 0.850 26 H 0.123 0.877 27 H 0.324 0.676 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 4.871 0.315 5.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.125 4.125 3 C -0.127 4.127 4 C -0.178 4.178 5 C -0.107 4.107 6 C -0.371 4.371 7 S 0.372 5.628 8 C -0.080 4.080 9 C -0.384 4.384 10 H 0.140 0.860 11 C -0.212 4.212 12 N -0.378 5.378 13 Si 0.830 3.170 14 H -0.175 1.175 15 H -0.166 1.166 16 H -0.184 1.184 17 C -0.458 4.458 18 C 0.237 3.763 19 O -0.469 6.469 20 C -0.004 4.004 21 H 0.088 0.912 22 H 0.107 0.893 23 H 0.079 0.921 24 H 0.167 0.833 25 H 0.167 0.833 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.622 3.763 0.275 4.594 hybrid contribution -1.178 -0.046 -0.007 1.179 sum 1.444 3.717 0.268 3.996 Atomic orbital electron populations 1.21012 0.90516 1.03106 1.02118 1.19757 0.96822 0.91333 1.04565 1.20771 0.94530 0.97132 1.00283 1.21103 0.94375 0.97472 1.04897 1.20654 0.99279 0.90275 1.00523 1.23959 0.97988 1.01572 1.13610 1.84416 1.06532 0.90913 1.80897 1.22062 0.95253 0.97002 0.93701 1.20735 0.97749 0.90109 1.29774 0.86010 1.27731 0.93181 1.09300 0.90972 1.68521 1.01488 1.41840 1.25967 0.84696 0.80265 0.71345 0.80708 1.17461 1.16571 1.18397 1.19376 0.96356 0.91083 1.38938 1.22180 0.90189 0.90757 0.73165 1.90276 1.83080 1.26523 1.47039 1.19146 0.92115 0.92774 0.96383 0.91208 0.89277 0.92070 0.83317 0.83278 0.85864 0.86134 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.51 8.44 71.24 0.60 -2.91 15 2 C -0.12 -4.79 5.91 -19.60 -0.12 -4.90 15 3 C -0.11 -3.50 9.56 21.93 0.21 -3.29 15 4 C -0.16 -5.17 10.03 22.27 0.22 -4.94 15 5 C -0.08 -3.29 10.07 22.53 0.23 -3.06 15 6 C -0.26 -12.12 6.44 23.11 0.15 -11.97 15 7 S 0.11 5.61 20.01 -56.49 -1.13 4.48 15 8 C 0.04 2.23 6.14 22.71 0.14 2.37 15 9 C -0.35 -18.87 8.72 23.14 0.20 -18.67 15 10 H 0.12 6.88 5.34 -2.91 -0.02 6.87 15 11 C 0.01 0.60 5.51 85.53 0.47 1.07 15 12 N -0.75 -33.99 10.54 21.97 0.23 -33.76 15 13 Si 1.01 34.58 29.57 68.60 2.03 36.61 15 14 H -0.25 -8.22 7.11 99.48 0.71 -7.51 15 15 H -0.24 -7.24 7.11 99.48 0.71 -6.53 15 16 H -0.26 -9.29 7.11 99.48 0.71 -8.59 15 17 C -0.45 -23.98 5.90 -20.40 -0.12 -24.10 15 18 C 0.36 18.22 10.37 68.58 0.71 18.93 15 19 O -0.58 -32.47 14.77 -3.62 -0.05 -32.52 15 20 C 0.00 0.11 5.98 -20.19 -0.12 -0.01 15 21 H 0.07 2.08 8.06 -2.38 -0.02 2.06 15 22 H 0.09 2.15 7.97 -2.39 -0.02 2.13 15 23 H 0.06 2.08 5.42 -2.39 -0.01 2.06 15 24 H 0.15 3.60 8.00 -2.91 -0.02 3.58 15 25 H 0.15 3.62 8.06 -2.91 -0.02 3.60 15 26 H 0.12 4.21 8.06 -2.91 -0.02 4.18 15 27 H 0.32 12.42 8.29 -92.71 -0.77 11.66 15 28 H 0.10 4.26 4.33 -2.91 -0.01 4.24 15 Total: -1.00 -63.78 252.78 4.86 -58.93 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.20 Total: 17.75 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 2.58 Total: -51.48 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.23 Total: -33.76 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.05 Total: -32.52 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.13 Total: 4.48 kcal Total: -63.78 4.86 -58.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.871 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds