Wall clock time and date at job start Mon Mar 30 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37824 * 119.43347 * 2 1 4 4 C 1.39495 * 121.40117 * 180.02562 * 3 2 1 5 5 S 1.76019 * 130.27113 * 180.27588 * 4 3 2 6 6 C 1.75482 * 91.73199 * 180.02562 * 5 4 3 7 7 C 1.39690 * 124.88568 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99871 * 193.07803 * 7 6 5 9 9 C 1.40443 * 119.99993 * 13.08718 * 7 6 5 10 10 N 1.30593 * 119.99986 * 200.43091 * 9 7 6 11 11 Si 1.86802 * 119.99748 * 20.42952 * 9 7 6 12 12 H 1.48504 * 109.47344 * 269.99790 * 11 9 7 13 13 H 1.48498 * 109.47357 * 30.00241 * 11 9 7 14 14 H 1.48507 * 109.46812 * 150.00567 * 11 9 7 15 15 C 1.37379 * 110.23152 * 359.70460 * 6 5 4 16 16 C 1.38916 * 115.07116 * 0.22601 * 15 6 5 17 17 C 1.47766 * 128.84462 * 180.02562 * 16 15 6 18 18 C 1.46423 * 120.35142 * 359.97438 * 17 16 15 19 19 O 1.21361 * 119.99947 * 180.02562 * 18 17 16 20 20 C 1.38198 * 119.43382 * 179.97438 * 2 1 3 21 21 H 1.09007 * 109.47165 * 90.00182 * 1 2 3 22 22 H 1.08999 * 109.47791 * 210.00733 * 1 2 3 23 23 H 1.09003 * 109.47281 * 330.00829 * 1 2 3 24 24 H 1.07992 * 119.30358 * 359.97438 * 3 2 1 25 25 H 0.96998 * 119.99625 * 354.69174 * 10 9 7 26 26 H 1.07992 * 122.46432 * 180.24826 * 15 6 5 27 27 H 1.08002 * 120.00269 * 359.97438 * 18 17 16 28 28 H 1.07998 * 119.87649 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1842 1.2003 0.0000 4 6 3.5783 1.2482 -0.0005 5 16 4.6694 2.6295 0.0058 6 6 6.0787 1.5840 -0.0010 7 6 7.4031 2.0282 -0.0004 8 1 8.2045 1.3372 -0.2164 9 6 7.6924 3.3733 0.2814 10 7 8.8322 3.8885 -0.0939 11 14 6.4467 4.4255 1.1929 12 1 5.5438 5.0831 0.2143 13 1 5.6479 3.5683 2.1052 14 1 7.1584 5.4617 1.9836 15 6 5.6922 0.2657 -0.0010 16 6 4.3191 0.0548 -0.0008 17 6 3.5778 -1.2235 -0.0002 18 6 4.2996 -2.4974 -0.0004 19 8 3.6843 -3.5435 -0.0003 20 6 2.1861 -1.2036 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5137 24 1 1.6238 2.1235 -0.0004 25 1 9.5098 3.3242 -0.4981 26 1 6.4035 -0.5469 -0.0008 27 1 5.3796 -2.5062 -0.0013 28 1 1.6349 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396375895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:50 Heat of formation + Delta-G solvation = -28.298337 kcal Electronic energy + Delta-G solvation = -14612.078236 eV Core-core repulsion = 12103.965191 eV Total energy + Delta-G solvation = -2508.113046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.93502 -37.46275 -35.50527 -33.94998 -30.88077 -30.23257 -27.56811 -24.94034 -23.41884 -21.95713 -20.00885 -19.14791 -19.06486 -16.48450 -15.66148 -15.32250 -14.73586 -14.38299 -13.87092 -13.72340 -13.64800 -13.08570 -12.81466 -12.75629 -12.31797 -11.95070 -11.63484 -11.51548 -11.00205 -10.84841 -10.78337 -10.38786 -10.02662 -9.68210 -9.29198 -8.99020 -8.67982 -8.14338 -7.67166 -6.86417 -5.00452 1.18668 1.90515 2.28460 2.75702 2.88260 3.04004 3.14295 3.30184 3.39255 3.57749 4.31379 4.71897 5.04166 5.41466 5.61691 5.71439 5.75707 5.97371 5.98837 6.18363 6.29280 6.51420 6.68511 6.72138 6.81182 6.95041 7.04601 7.23019 7.29266 7.48568 7.64077 7.81172 7.94806 8.16027 9.21058 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.007932 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.690315 B = 3529.095229 C = 4360.306177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.200 4.200 3 C -0.005 4.005 4 C -0.233 4.233 5 S -0.028 6.028 6 C 0.066 3.934 7 C -0.407 4.407 8 H 0.104 0.896 9 C 0.043 3.957 10 N -0.752 5.752 11 Si 0.974 3.026 12 H -0.232 1.232 13 H -0.220 1.220 14 H -0.241 1.241 15 C -0.365 4.365 16 C 0.077 3.923 17 C -0.256 4.256 18 C 0.391 3.609 19 O -0.505 6.505 20 C -0.012 4.012 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.107 0.893 25 H 0.300 0.700 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 0.821 1.164 5.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.202 4.202 3 C -0.028 4.028 4 C -0.345 4.345 5 S 0.228 5.772 6 C -0.053 4.053 7 C -0.440 4.440 8 H 0.122 0.878 9 C -0.185 4.185 10 N -0.371 5.371 11 Si 0.794 3.206 12 H -0.157 1.157 13 H -0.143 1.143 14 H -0.165 1.165 15 C -0.388 4.388 16 C 0.069 3.931 17 C -0.259 4.259 18 C 0.256 3.744 19 O -0.384 6.384 20 C -0.031 4.031 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.112 0.888 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.177 3.294 1.663 7.195 hybrid contribution 0.874 -2.830 -0.744 3.054 sum -5.303 0.464 0.918 5.402 Atomic orbital electron populations 1.20518 0.91969 1.01449 1.00937 1.19030 0.95065 0.92465 1.13643 1.20195 0.91183 0.96781 0.94604 1.22322 0.96601 0.96022 1.19599 1.84001 0.99165 1.10085 1.83923 1.21350 0.94803 0.94217 0.94883 1.20618 0.92540 0.97250 1.33619 0.87798 1.27698 1.00446 0.96568 0.93829 1.70443 1.05482 1.39891 1.21241 0.84283 0.76257 0.79017 0.81075 1.15692 1.14315 1.16542 1.19490 0.92960 0.94986 1.31359 1.18919 0.92469 0.90724 0.90939 1.21180 0.93556 0.92923 1.18229 1.23478 0.94598 0.86759 0.69556 1.90437 1.73277 1.35342 1.39353 1.20825 0.92897 0.96867 0.92559 0.92744 0.92585 0.92684 0.87499 0.88771 0.86471 0.89621 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.98 36.00 0.36 -0.92 15 2 C -0.20 -3.62 5.86 -104.79 -0.61 -4.23 15 3 C 0.00 -0.09 9.62 -39.26 -0.38 -0.47 15 4 C -0.23 -5.09 6.48 -38.27 -0.25 -5.34 15 5 S -0.03 -0.61 16.94 -107.50 -1.82 -2.43 15 6 C 0.07 1.53 5.72 -39.35 -0.23 1.30 15 7 C -0.41 -9.39 9.61 -38.21 -0.37 -9.76 15 8 H 0.10 2.39 8.06 -52.49 -0.42 1.96 15 9 C 0.04 0.96 5.50 -17.25 -0.09 0.87 15 10 N -0.75 -16.81 13.64 55.57 0.76 -16.06 15 11 Si 0.97 18.82 24.75 -169.99 -4.21 14.61 15 12 H -0.23 -4.31 6.84 56.52 0.39 -3.92 15 13 H -0.22 -4.24 6.54 56.52 0.37 -3.87 15 14 H -0.24 -4.38 7.11 56.52 0.40 -3.98 15 15 C -0.36 -8.33 9.77 -39.64 -0.39 -8.71 15 16 C 0.08 1.72 6.01 -104.91 -0.63 1.09 15 17 C -0.26 -5.32 6.08 -102.36 -0.62 -5.94 15 18 C 0.39 7.60 11.28 34.03 0.38 7.98 15 19 O -0.50 -10.69 17.15 5.49 0.09 -10.59 15 20 C -0.01 -0.22 9.19 -39.24 -0.36 -0.58 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.06 0.72 8.07 -51.93 -0.42 0.30 15 23 H 0.05 0.69 8.07 -51.93 -0.42 0.27 15 24 H 0.11 1.80 8.06 -52.49 -0.42 1.37 15 25 H 0.30 6.36 8.73 -40.82 -0.36 6.01 15 26 H 0.12 2.51 7.43 -52.49 -0.39 2.12 15 27 H 0.09 1.48 7.34 -52.49 -0.39 1.09 15 28 H 0.12 2.12 7.63 -52.49 -0.40 1.72 15 LS Contribution 259.59 15.07 3.91 3.91 Total: -1.00 -24.99 259.59 -6.93 -31.92 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.48 Total: 3.35 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -3.18 Total: -24.72 kcal Atomic # 7 Polarization: -16.81 SS G_CDS: 0.76 Total: -16.06 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.21 Total: 14.61 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.82 Total: -2.43 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -24.99 -6.93 -31.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.621 kcal (2) G-P(sol) polarization free energy of solvation -24.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds