Wall clock time and date at job start Mon Mar 30 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37824 * 119.43347 * 2 1 4 4 C 1.39495 * 121.40117 * 180.02562 * 3 2 1 5 5 S 1.76019 * 130.27113 * 180.27588 * 4 3 2 6 6 C 1.75482 * 91.73199 * 180.02562 * 5 4 3 7 7 C 1.39690 * 124.88568 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99871 * 193.07803 * 7 6 5 9 9 C 1.40443 * 119.99993 * 13.08718 * 7 6 5 10 10 N 1.30593 * 119.99986 * 200.43091 * 9 7 6 11 11 Si 1.86802 * 119.99748 * 20.42952 * 9 7 6 12 12 H 1.48504 * 109.47344 * 269.99790 * 11 9 7 13 13 H 1.48498 * 109.47357 * 30.00241 * 11 9 7 14 14 H 1.48507 * 109.46812 * 150.00567 * 11 9 7 15 15 C 1.37379 * 110.23152 * 359.70460 * 6 5 4 16 16 C 1.38916 * 115.07116 * 0.22601 * 15 6 5 17 17 C 1.47766 * 128.84462 * 180.02562 * 16 15 6 18 18 C 1.46423 * 120.35142 * 359.97438 * 17 16 15 19 19 O 1.21361 * 119.99947 * 180.02562 * 18 17 16 20 20 C 1.38198 * 119.43382 * 179.97438 * 2 1 3 21 21 H 1.09007 * 109.47165 * 90.00182 * 1 2 3 22 22 H 1.08999 * 109.47791 * 210.00733 * 1 2 3 23 23 H 1.09003 * 109.47281 * 330.00829 * 1 2 3 24 24 H 1.07992 * 119.30358 * 359.97438 * 3 2 1 25 25 H 0.96998 * 119.99625 * 354.69174 * 10 9 7 26 26 H 1.07992 * 122.46432 * 180.24826 * 15 6 5 27 27 H 1.08002 * 120.00269 * 359.97438 * 18 17 16 28 28 H 1.07998 * 119.87649 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1842 1.2003 0.0000 4 6 3.5783 1.2482 -0.0005 5 16 4.6694 2.6295 0.0058 6 6 6.0787 1.5840 -0.0010 7 6 7.4031 2.0282 -0.0004 8 1 8.2045 1.3372 -0.2164 9 6 7.6924 3.3733 0.2814 10 7 8.8322 3.8885 -0.0939 11 14 6.4467 4.4255 1.1929 12 1 5.5438 5.0831 0.2143 13 1 5.6479 3.5683 2.1052 14 1 7.1584 5.4617 1.9836 15 6 5.6922 0.2657 -0.0010 16 6 4.3191 0.0548 -0.0008 17 6 3.5778 -1.2235 -0.0002 18 6 4.2996 -2.4974 -0.0004 19 8 3.6843 -3.5435 -0.0003 20 6 2.1861 -1.2036 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5137 24 1 1.6238 2.1235 -0.0004 25 1 9.5098 3.3242 -0.4981 26 1 6.4035 -0.5469 -0.0008 27 1 5.3796 -2.5062 -0.0013 28 1 1.6349 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396375895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:50 Heat of formation + Delta-G solvation = -40.490575 kcal Electronic energy + Delta-G solvation = -14612.606931 eV Core-core repulsion = 12103.965191 eV Total energy + Delta-G solvation = -2508.641741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53513 -39.07740 -37.13760 -35.55504 -32.42024 -31.82211 -29.04499 -26.46085 -24.98912 -23.58625 -21.60214 -20.76915 -20.72393 -18.08277 -17.27499 -16.92464 -16.28853 -15.96691 -15.42575 -15.33549 -15.23061 -14.48471 -14.40162 -14.27351 -13.81825 -13.48449 -13.08305 -12.80591 -12.53684 -12.39071 -12.36993 -12.00173 -11.59844 -11.33256 -10.88318 -10.58837 -10.30079 -9.83698 -9.31021 -8.51062 -6.73027 -0.42351 0.28080 0.68463 1.10484 1.25320 1.43648 1.57635 1.72231 1.83736 2.04208 2.64748 3.07153 3.54034 3.97842 4.07049 4.32489 4.43110 4.55052 4.69155 4.93582 4.94133 5.02623 5.09179 5.15281 5.23406 5.32262 5.40099 5.61001 5.73439 5.78672 6.00664 6.17472 6.26721 6.57183 7.52996 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.007932 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.690315 B = 3529.095229 C = 4360.306177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.182 4.182 3 C -0.011 4.011 4 C -0.253 4.253 5 S -0.013 6.013 6 C 0.049 3.951 7 C -0.439 4.439 8 H 0.089 0.911 9 C 0.024 3.976 10 N -0.770 5.770 11 Si 0.989 3.011 12 H -0.219 1.219 13 H -0.222 1.222 14 H -0.220 1.220 15 C -0.382 4.382 16 C 0.055 3.945 17 C -0.264 4.264 18 C 0.397 3.603 19 O -0.520 6.520 20 C -0.022 4.022 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.135 0.865 25 H 0.298 0.702 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 0.930 1.445 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.185 4.185 3 C -0.033 4.033 4 C -0.366 4.366 5 S 0.243 5.757 6 C -0.070 4.070 7 C -0.472 4.472 8 H 0.106 0.894 9 C -0.201 4.201 10 N -0.389 5.389 11 Si 0.805 3.195 12 H -0.144 1.144 13 H -0.145 1.145 14 H -0.144 1.144 15 C -0.405 4.405 16 C 0.047 3.953 17 C -0.267 4.267 18 C 0.263 3.737 19 O -0.400 6.400 20 C -0.041 4.041 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.153 0.847 25 H 0.110 0.890 26 H 0.137 0.863 27 H 0.127 0.873 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.877 3.405 1.936 9.703 hybrid contribution 1.469 -3.064 -0.859 3.505 sum -7.408 0.340 1.077 7.494 Atomic orbital electron populations 1.20620 0.88498 1.03199 1.02537 1.19589 0.97522 0.91422 1.09940 1.20601 0.90309 0.98566 0.93855 1.22675 0.97887 0.95791 1.20210 1.83774 0.98388 1.09850 1.83646 1.21501 0.95409 0.94889 0.95154 1.20569 0.92412 0.97820 1.36390 0.89355 1.28452 1.01143 0.96913 0.93567 1.70476 1.05948 1.39916 1.22586 0.84150 0.75545 0.78823 0.80982 1.14396 1.14549 1.14362 1.19660 0.93627 0.95139 1.32085 1.19087 0.92423 0.91774 0.91966 1.21463 0.94486 0.92875 1.17847 1.23726 0.95519 0.86026 0.68469 1.90431 1.73802 1.35705 1.40080 1.21163 0.92503 0.98212 0.92254 0.91076 0.91167 0.90756 0.84699 0.89007 0.86329 0.87346 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.10 9.98 71.23 0.71 -1.39 15 2 C -0.18 -5.91 5.86 -19.97 -0.12 -6.03 15 3 C -0.01 -0.39 9.62 22.47 0.22 -0.17 15 4 C -0.25 -10.67 6.48 23.12 0.15 -10.52 15 5 S -0.01 -0.56 16.94 -56.49 -0.96 -1.52 15 6 C 0.05 2.30 5.72 22.42 0.13 2.42 15 7 C -0.44 -21.00 9.61 23.16 0.22 -20.77 15 8 H 0.09 4.33 8.06 -2.91 -0.02 4.30 15 9 C 0.02 1.10 5.50 85.41 0.47 1.57 15 10 N -0.77 -35.20 13.64 21.91 0.30 -34.90 15 11 Si 0.99 37.25 24.75 68.60 1.70 38.94 15 12 H -0.22 -7.77 6.84 99.48 0.68 -7.09 15 13 H -0.22 -8.37 6.54 99.48 0.65 -7.72 15 14 H -0.22 -7.54 7.11 99.48 0.71 -6.83 15 15 C -0.38 -17.65 9.77 22.23 0.22 -17.43 15 16 C 0.05 2.42 6.01 -20.05 -0.12 2.30 15 17 C -0.26 -10.56 6.08 -18.40 -0.11 -10.67 15 18 C 0.40 14.87 11.28 69.95 0.79 15.66 15 19 O -0.52 -21.15 17.15 -3.28 -0.06 -21.21 15 20 C -0.02 -0.77 9.19 22.49 0.21 -0.57 15 21 H 0.07 1.46 8.14 -2.38 -0.02 1.44 15 22 H 0.07 1.45 8.07 -2.39 -0.02 1.43 15 23 H 0.07 1.46 8.07 -2.39 -0.02 1.44 15 24 H 0.14 3.97 8.06 -2.91 -0.02 3.94 15 25 H 0.30 13.16 8.73 -92.71 -0.81 12.35 15 26 H 0.12 5.22 7.43 -2.91 -0.02 5.20 15 27 H 0.11 3.61 7.34 -2.91 -0.02 3.59 15 28 H 0.13 4.32 7.63 -2.91 -0.02 4.30 15 Total: -1.00 -52.72 259.59 4.80 -47.92 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.06 Total: 16.36 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 2.76 Total: -45.59 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.30 Total: -34.90 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 1.70 Total: 38.94 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -0.96 Total: -1.52 kcal Total: -52.72 4.80 -47.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396375895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.429 kcal (2) G-P(sol) polarization free energy of solvation -52.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds