Wall clock time and date at job start Mon Mar 30 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35014 * 119.56140 * 2 1 4 4 C 1.41380 * 120.42077 * 180.02562 * 3 2 1 5 5 C 1.40854 * 120.17437 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00128 * 24.74779 * 5 4 3 7 7 C 1.40151 * 120.00053 * 204.74037 * 5 4 3 8 8 N 1.30715 * 119.99874 * 17.95303 * 7 5 4 9 9 Si 1.86800 * 119.99982 * 197.95252 * 7 5 4 10 10 H 1.48496 * 109.47310 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47038 * 120.00341 * 9 7 5 12 12 H 1.48501 * 109.47102 * 239.99989 * 9 7 5 13 13 C 1.40332 * 119.65028 * 0.02562 * 4 3 2 14 14 C 1.39055 * 120.01420 * 359.97438 * 13 4 3 15 15 S 1.76038 * 130.18866 * 179.97438 * 14 13 4 16 16 C 1.75465 * 91.67364 * 180.02562 * 15 14 13 17 17 C 1.41821 * 124.75869 * 180.02562 * 16 15 14 18 18 O 1.21397 * 119.99908 * 359.95738 * 17 16 15 19 19 C 1.35666 * 110.48749 * 0.02562 * 16 15 14 20 20 C 1.39641 * 115.39183 * 0.02562 * 19 16 15 21 21 H 1.08998 * 109.47262 * 89.99494 * 1 2 3 22 22 H 1.09003 * 109.47087 * 209.99857 * 1 2 3 23 23 H 1.09007 * 109.46597 * 329.99547 * 1 2 3 24 24 H 1.07998 * 119.78637 * 0.05003 * 3 2 1 25 25 H 0.96993 * 119.99753 * 179.97438 * 8 7 5 26 26 H 1.08001 * 119.99462 * 180.02562 * 13 4 3 27 27 H 1.08001 * 120.00510 * 179.97438 * 17 16 15 28 28 H 1.07994 * 122.30123 * 179.73292 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1744 0.0000 4 6 3.5868 1.1956 -0.0005 5 6 4.2764 2.4238 0.0000 6 1 3.8003 3.3103 0.3923 7 6 5.5805 2.4954 -0.5084 8 7 6.0308 1.5480 -1.2884 9 14 6.6750 3.9448 -0.0715 10 1 5.9342 4.8736 0.8193 11 1 7.8912 3.4542 0.6253 12 1 7.0695 4.6589 -1.3123 13 6 4.2992 -0.0134 -0.0016 14 6 3.6150 -1.2240 -0.0016 15 16 4.2267 -2.8746 -0.0034 16 6 2.5999 -3.5322 -0.0028 17 6 2.2869 -4.9154 -0.0031 18 8 3.1784 -5.7395 -0.0048 19 6 1.6835 -2.5319 -0.0018 20 6 2.2091 -1.2382 -0.0022 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 1.6225 2.1035 0.0008 25 1 6.9332 1.5978 -1.6405 26 1 5.3792 -0.0037 -0.0016 27 1 1.2555 -5.2358 -0.0022 28 1 0.6206 -2.7230 -0.0055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396376425.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:31 Heat of formation + Delta-G solvation = -29.444109 kcal Electronic energy + Delta-G solvation = -14596.724609 eV Core-core repulsion = 12088.561879 eV Total energy + Delta-G solvation = -2508.162730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34409 -39.63900 -36.84069 -35.07621 -33.12050 -31.23509 -28.05125 -27.52377 -24.71246 -23.69098 -21.80741 -21.05156 -19.05037 -18.07595 -17.25002 -16.86781 -16.60982 -15.63575 -15.37113 -15.22082 -14.79376 -14.54908 -14.14725 -13.77305 -13.40836 -13.35166 -13.20519 -12.83249 -12.68517 -12.34669 -11.98058 -11.75214 -11.60325 -11.24967 -10.95111 -10.74575 -10.16316 -9.29644 -8.89119 -8.44474 -6.47989 -0.48144 0.89516 0.91950 1.06101 1.36254 1.43416 1.48564 1.53582 2.08831 2.16153 2.61478 3.47570 3.76587 4.16344 4.33763 4.47548 4.61396 4.78314 4.84007 4.93671 4.98287 5.01770 5.10775 5.23352 5.34589 5.39855 5.76612 5.86597 5.98974 6.05994 6.40301 6.62767 6.67625 6.76270 8.03654 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.007000 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.183622 B = 3998.859260 C = 4859.291904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.007 4.007 3 C -0.214 4.214 4 C 0.108 3.892 5 C -0.443 4.443 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.792 5.792 9 Si 0.990 3.010 10 H -0.245 1.245 11 H -0.268 1.268 12 H -0.262 1.262 13 C -0.209 4.209 14 C -0.073 4.073 15 S 0.003 5.997 16 C -0.379 4.379 17 C 0.415 3.585 18 O -0.539 6.539 19 C 0.035 3.965 20 C -0.245 4.245 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.125 0.875 25 H 0.297 0.703 26 H 0.098 0.902 27 H 0.159 0.841 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 0.935 1.684 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.102 3.898 5 C -0.470 4.470 6 H 0.121 0.879 7 C -0.190 4.190 8 N -0.415 5.415 9 Si 0.809 3.191 10 H -0.168 1.168 11 H -0.193 1.193 12 H -0.186 1.186 13 C -0.237 4.237 14 C -0.189 4.189 15 S 0.265 5.735 16 C -0.494 4.494 17 C 0.281 3.719 18 O -0.421 6.421 19 C 0.005 3.995 20 C -0.250 4.250 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.143 0.857 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.175 0.825 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.205 -0.355 1.522 6.399 hybrid contribution -0.088 1.224 -0.103 1.232 sum -6.294 0.869 1.419 6.510 Atomic orbital electron populations 1.20863 0.88654 1.03780 1.03102 1.19721 0.96876 0.90405 0.93982 1.20864 0.93552 0.97621 1.11240 1.17917 0.92443 0.92820 0.86664 1.20279 0.98615 0.96187 1.31955 0.87907 1.27121 0.99490 1.00663 0.91751 1.69847 1.18573 1.33227 1.19838 0.85013 0.77421 0.76988 0.79631 1.16817 1.19265 1.18598 1.20497 0.98499 0.89932 1.14798 1.22979 0.97503 0.96399 1.02008 1.84020 1.10087 0.97551 1.81799 1.23791 0.95514 1.00843 1.29224 1.22467 0.95998 0.84497 0.68899 1.90512 1.53901 1.56587 1.41109 1.20851 1.00840 0.89187 0.88641 1.18041 0.91251 0.94555 1.21138 0.90156 0.89956 0.90457 0.85727 0.89142 0.88417 0.82487 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.77 71.24 0.70 -2.04 15 2 C -0.01 -0.28 5.90 -19.59 -0.12 -0.39 15 3 C -0.21 -9.12 9.27 22.30 0.21 -8.92 15 4 C 0.11 5.39 5.57 -21.36 -0.12 5.27 15 5 C -0.44 -21.12 9.03 23.37 0.21 -20.91 15 6 H 0.10 4.47 7.91 -2.91 -0.02 4.45 15 7 C 0.03 1.36 5.13 85.32 0.44 1.80 15 8 N -0.79 -38.99 10.97 21.86 0.24 -38.75 15 9 Si 0.99 33.94 29.60 68.60 2.03 35.97 15 10 H -0.25 -7.94 7.11 99.48 0.71 -7.23 15 11 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15 12 H -0.26 -8.57 7.11 99.48 0.71 -7.87 15 13 C -0.21 -11.03 8.72 22.98 0.20 -10.83 15 14 C -0.07 -3.57 6.46 23.04 0.15 -3.42 15 15 S 0.00 0.13 22.93 -56.49 -1.30 -1.16 15 16 C -0.38 -14.23 6.18 22.56 0.14 -14.09 15 17 C 0.41 13.29 11.36 68.71 0.78 14.07 15 18 O -0.54 -21.98 17.61 -3.39 -0.06 -22.04 15 19 C 0.04 1.20 9.47 22.01 0.21 1.41 15 20 C -0.25 -10.23 5.83 -21.35 -0.12 -10.36 15 21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.08 1.72 7.10 -2.39 -0.02 1.70 15 23 H 0.08 1.74 8.07 -2.38 -0.02 1.72 15 24 H 0.12 4.68 8.06 -2.91 -0.02 4.65 15 25 H 0.30 13.15 8.29 -92.71 -0.77 12.38 15 26 H 0.10 5.50 6.15 -2.91 -0.02 5.48 15 27 H 0.16 3.04 8.06 -2.91 -0.02 3.02 15 28 H 0.18 4.09 7.32 -2.91 -0.02 4.07 15 Total: -1.00 -63.42 264.21 4.77 -58.65 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.19 Total: 15.76 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 2.67 Total: -48.42 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.24 Total: -38.75 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.04 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.30 Total: -1.16 kcal Total: -63.42 4.77 -58.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376425.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.205 kcal (2) G-P(sol) polarization free energy of solvation -63.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds