Wall clock time and date at job start Mon Mar 30 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32266 * 124.64117 * 2 1 4 4 C 1.40467 * 115.82194 * 179.76056 * 3 2 1 5 5 C 1.39484 * 112.56866 * 0.47158 * 4 3 2 6 6 S 1.75518 * 124.64111 * 180.02562 * 2 1 3 7 7 C 1.42039 * 119.78609 * 179.80363 * 5 4 3 8 8 C 1.40515 * 119.68360 * 179.72655 * 7 5 4 9 9 H 1.08004 * 120.00142 * 329.80419 * 8 7 5 10 10 C 1.40407 * 120.00171 * 149.80223 * 8 7 5 11 11 N 1.30567 * 120.00313 * 161.76076 * 10 8 7 12 12 Si 1.86803 * 119.99770 * 341.75875 * 10 8 7 13 13 H 1.48499 * 109.47123 * 95.40604 * 12 10 8 14 14 H 1.48503 * 109.47202 * 215.40860 * 12 10 8 15 15 H 1.48501 * 109.46925 * 335.40666 * 12 10 8 16 16 C 1.40621 * 120.63024 * 359.74536 * 7 5 4 17 17 C 1.36023 * 120.84384 * 359.97438 * 16 7 5 18 18 C 1.39901 * 120.75143 * 359.97438 * 17 16 7 19 19 C 1.46356 * 120.08585 * 180.02562 * 18 17 16 20 20 O 1.21377 * 119.99697 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47353 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47211 * 299.99778 * 1 2 3 23 23 H 1.09001 * 109.47145 * 59.99639 * 1 2 3 24 24 H 1.08004 * 122.08894 * 0.02712 * 3 2 1 25 25 H 0.96995 * 119.99844 * 180.02562 * 11 10 8 26 26 H 1.08000 * 119.57947 * 179.97438 * 16 7 5 27 27 H 1.08005 * 119.62938 * 179.97438 * 17 16 7 28 28 H 1.07998 * 120.00023 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2588 1.0882 0.0000 4 6 3.6469 0.8728 0.0053 5 6 3.9785 -0.4820 -0.0010 6 16 2.5047 -1.4440 -0.0006 7 6 5.3436 -0.8744 -0.0010 8 6 5.6751 -2.2398 -0.0015 9 1 5.0170 -2.9556 0.4686 10 6 6.8621 -2.6739 -0.6132 11 7 7.3554 -3.8472 -0.3220 12 14 7.7354 -1.5727 -1.8437 13 1 8.8011 -0.8044 -1.1513 14 1 8.3415 -2.4074 -2.9120 15 1 6.7580 -0.6308 -2.4460 16 6 6.3664 0.0907 -0.0002 17 6 6.0722 1.4187 0.0001 18 6 4.7437 1.8571 -0.0009 19 6 4.4437 3.2896 -0.0011 20 8 5.3483 4.0989 -0.0009 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8322 2.0804 0.0004 25 1 8.1756 -4.1468 -0.7443 26 1 7.3987 -0.2267 0.0001 27 1 6.8733 2.1431 0.0011 28 1 3.4176 3.6264 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396376631.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:06 Heat of formation + Delta-G solvation = -11.655394 kcal Electronic energy + Delta-G solvation = -14800.428738 eV Core-core repulsion = 12293.037384 eV Total energy + Delta-G solvation = -2507.391353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.77153 -37.33718 -35.61190 -33.74620 -30.87694 -30.62870 -26.69256 -26.11292 -22.50980 -22.18387 -20.39961 -19.35587 -17.74678 -16.66634 -15.44893 -15.29367 -14.92454 -14.23430 -13.80152 -13.74043 -13.31790 -13.17615 -12.88011 -12.66155 -12.25459 -12.16847 -11.75216 -11.34872 -11.13729 -10.84806 -10.54857 -10.29563 -9.92445 -9.74973 -9.51490 -8.74392 -8.55197 -7.57033 -7.49243 -7.09536 -4.93819 1.20213 2.06712 2.30396 2.83726 2.86501 2.95413 3.04507 3.12399 3.35784 3.69206 4.29583 5.03163 5.12904 5.27727 5.49341 5.68436 5.77817 5.88398 5.98383 6.10361 6.34649 6.35497 6.51176 6.62795 6.88018 6.95814 7.10450 7.28749 7.56583 7.62802 7.83214 8.13052 8.24389 8.48622 9.47313 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.010747 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.722626 B = 2604.848709 C = 3895.133791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.177 4.177 3 C -0.141 4.141 4 C 0.012 3.988 5 C -0.207 4.207 6 S 0.086 5.914 7 C 0.143 3.857 8 C -0.397 4.397 9 H 0.102 0.898 10 C 0.081 3.919 11 N -0.762 5.762 12 Si 0.920 3.080 13 H -0.261 1.261 14 H -0.284 1.284 15 H -0.237 1.237 16 C -0.275 4.275 17 C 0.019 3.981 18 C -0.322 4.322 19 C 0.385 3.615 20 O -0.523 6.523 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.129 0.871 25 H 0.298 0.702 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.322 2.011 -1.206 7.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.294 4.294 3 C -0.173 4.173 4 C 0.003 3.997 5 C -0.323 4.323 6 S 0.352 5.648 7 C 0.136 3.864 8 C -0.422 4.422 9 H 0.120 0.880 10 C -0.145 4.145 11 N -0.382 5.382 12 Si 0.745 3.255 13 H -0.187 1.187 14 H -0.211 1.211 15 H -0.160 1.160 16 C -0.298 4.298 17 C 0.000 4.000 18 C -0.327 4.327 19 C 0.253 3.747 20 O -0.405 6.405 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.147 0.853 25 H 0.109 0.891 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.086 0.541 -1.199 7.207 hybrid contribution 0.761 1.510 -0.388 1.735 sum -6.325 2.051 -1.586 6.836 Atomic orbital electron populations 1.20285 0.88547 1.02418 1.02357 1.24060 0.99431 0.97024 1.08889 1.19658 0.92259 0.98720 1.06661 1.18980 0.91657 0.92105 0.97006 1.22651 0.96534 0.94769 1.18305 1.83761 0.95864 1.07715 1.77479 1.17060 0.88334 0.93444 0.87534 1.19905 1.03320 0.92753 1.26226 0.88048 1.26515 0.95540 0.95680 0.96769 1.69543 1.17339 1.18590 1.32732 0.86105 0.80412 0.79807 0.79191 1.18666 1.21142 1.15990 1.20279 0.97482 0.92663 1.19343 1.20385 0.94850 0.95095 0.89685 1.20467 0.91773 0.92782 1.27678 1.23118 0.92765 0.88003 0.70806 1.90424 1.51214 1.57157 1.41726 0.91763 0.91056 0.91054 0.85333 0.89100 0.87428 0.87329 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.34 36.01 0.37 -0.55 15 2 C -0.18 -2.92 6.42 -36.24 -0.23 -3.15 15 3 C -0.14 -2.50 9.62 -40.67 -0.39 -2.89 15 4 C 0.01 0.25 6.02 -104.88 -0.63 -0.38 15 5 C -0.21 -4.69 6.36 -37.66 -0.24 -4.93 15 6 S 0.09 1.64 22.92 -107.50 -2.46 -0.83 15 7 C 0.14 3.44 5.12 -106.68 -0.55 2.89 15 8 C -0.40 -9.75 9.29 -37.91 -0.35 -10.10 15 9 H 0.10 2.58 7.99 -52.48 -0.42 2.16 15 10 C 0.08 1.91 5.39 -17.27 -0.09 1.81 15 11 N -0.76 -17.96 13.91 55.57 0.77 -17.18 15 12 Si 0.92 19.22 24.51 -169.99 -4.17 15.05 15 13 H -0.26 -5.31 6.71 56.52 0.38 -4.93 15 14 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 15 H -0.24 -5.22 6.88 56.52 0.39 -4.84 15 16 C -0.28 -6.46 7.01 -39.48 -0.28 -6.74 15 17 C 0.02 0.43 9.47 -39.75 -0.38 0.06 15 18 C -0.32 -7.04 6.08 -102.30 -0.62 -7.66 15 19 C 0.38 7.66 11.28 34.00 0.38 8.04 15 20 O -0.52 -11.79 17.13 5.47 0.09 -11.70 15 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.13 1.90 7.44 -52.48 -0.39 1.51 15 25 H 0.30 6.24 8.29 -40.82 -0.34 5.90 15 26 H 0.11 2.45 4.69 -52.49 -0.25 2.20 15 27 H 0.11 2.35 7.60 -52.48 -0.40 1.95 15 28 H 0.07 1.11 7.34 -52.49 -0.39 0.72 15 LS Contribution 259.35 15.07 3.91 3.91 Total: -1.00 -26.84 259.35 -7.14 -33.97 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -2.28 Total: 0.36 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -3.01 Total: -23.59 kcal Atomic # 7 Polarization: -17.96 SS G_CDS: 0.77 Total: -17.18 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.17 Total: 15.05 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.46 Total: -0.83 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.84 -7.14 -33.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376631.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.319 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds