Wall clock time and date at job start Mon Mar 30 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32266 * 124.64117 * 2 1 4 4 C 1.40467 * 115.82194 * 179.76056 * 3 2 1 5 5 C 1.39484 * 112.56866 * 0.47158 * 4 3 2 6 6 S 1.75518 * 124.64111 * 180.02562 * 2 1 3 7 7 C 1.42039 * 119.78609 * 179.80363 * 5 4 3 8 8 C 1.40515 * 119.68360 * 179.72655 * 7 5 4 9 9 H 1.08004 * 120.00142 * 329.80419 * 8 7 5 10 10 C 1.40407 * 120.00171 * 149.80223 * 8 7 5 11 11 N 1.30567 * 120.00313 * 161.76076 * 10 8 7 12 12 Si 1.86803 * 119.99770 * 341.75875 * 10 8 7 13 13 H 1.48499 * 109.47123 * 95.40604 * 12 10 8 14 14 H 1.48503 * 109.47202 * 215.40860 * 12 10 8 15 15 H 1.48501 * 109.46925 * 335.40666 * 12 10 8 16 16 C 1.40621 * 120.63024 * 359.74536 * 7 5 4 17 17 C 1.36023 * 120.84384 * 359.97438 * 16 7 5 18 18 C 1.39901 * 120.75143 * 359.97438 * 17 16 7 19 19 C 1.46356 * 120.08585 * 180.02562 * 18 17 16 20 20 O 1.21377 * 119.99697 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47353 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47211 * 299.99778 * 1 2 3 23 23 H 1.09001 * 109.47145 * 59.99639 * 1 2 3 24 24 H 1.08004 * 122.08894 * 0.02712 * 3 2 1 25 25 H 0.96995 * 119.99844 * 180.02562 * 11 10 8 26 26 H 1.08000 * 119.57947 * 179.97438 * 16 7 5 27 27 H 1.08005 * 119.62938 * 179.97438 * 17 16 7 28 28 H 1.07998 * 120.00023 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2588 1.0882 0.0000 4 6 3.6469 0.8728 0.0053 5 6 3.9785 -0.4820 -0.0010 6 16 2.5047 -1.4440 -0.0006 7 6 5.3436 -0.8744 -0.0010 8 6 5.6751 -2.2398 -0.0015 9 1 5.0170 -2.9556 0.4686 10 6 6.8621 -2.6739 -0.6132 11 7 7.3554 -3.8472 -0.3220 12 14 7.7354 -1.5727 -1.8437 13 1 8.8011 -0.8044 -1.1513 14 1 8.3415 -2.4074 -2.9120 15 1 6.7580 -0.6308 -2.4460 16 6 6.3664 0.0907 -0.0002 17 6 6.0722 1.4187 0.0001 18 6 4.7437 1.8571 -0.0009 19 6 4.4437 3.2896 -0.0011 20 8 5.3483 4.0989 -0.0009 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8322 2.0804 0.0004 25 1 8.1756 -4.1468 -0.7443 26 1 7.3987 -0.2267 0.0001 27 1 6.8733 2.1431 0.0011 28 1 3.4176 3.6264 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396376631.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:05 Heat of formation + Delta-G solvation = -26.351447 kcal Electronic energy + Delta-G solvation = -14801.066007 eV Core-core repulsion = 12293.037384 eV Total energy + Delta-G solvation = -2508.028622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42414 -39.00094 -37.16630 -35.43752 -32.56629 -32.04421 -28.35331 -27.54678 -24.21788 -23.70096 -22.04176 -20.86856 -19.44879 -18.31007 -17.08743 -16.95430 -16.48912 -15.82766 -15.40830 -15.17529 -14.88103 -14.60661 -14.54570 -14.23412 -13.74712 -13.45759 -13.22004 -12.89955 -12.78636 -12.47495 -12.15536 -11.84730 -11.55787 -11.35716 -11.19388 -10.39178 -10.20848 -9.25257 -9.15618 -8.69820 -6.75259 -0.37557 0.38701 0.84680 1.16157 1.26803 1.33016 1.35990 1.58203 1.67425 2.00543 2.55865 3.27913 3.77116 3.84468 4.20379 4.36200 4.39316 4.55004 4.74714 4.81433 4.84112 4.86248 5.13523 5.18061 5.21049 5.34039 5.48065 5.61887 5.79031 5.89356 6.07574 6.34523 6.47468 6.87603 7.78388 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.010747 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.722626 B = 2604.848709 C = 3895.133791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.146 4.146 3 C -0.158 4.158 4 C 0.011 3.989 5 C -0.250 4.250 6 S 0.070 5.930 7 C 0.134 3.866 8 C -0.432 4.432 9 H 0.077 0.923 10 C 0.059 3.941 11 N -0.793 5.793 12 Si 0.963 3.037 13 H -0.255 1.255 14 H -0.265 1.265 15 H -0.258 1.258 16 C -0.291 4.291 17 C 0.003 3.997 18 C -0.328 4.328 19 C 0.395 3.605 20 O -0.547 6.547 21 H 0.072 0.928 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.169 0.831 25 H 0.309 0.691 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 4.066 -1.627 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.263 4.263 3 C -0.188 4.188 4 C 0.001 3.999 5 C -0.365 4.365 6 S 0.335 5.665 7 C 0.128 3.872 8 C -0.458 4.458 9 H 0.095 0.905 10 C -0.164 4.164 11 N -0.415 5.415 12 Si 0.786 3.214 13 H -0.180 1.180 14 H -0.190 1.190 15 H -0.182 1.182 16 C -0.313 4.313 17 C -0.016 4.016 18 C -0.333 4.333 19 C 0.265 3.735 20 O -0.430 6.430 21 H 0.091 0.909 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.186 0.814 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.441 2.588 -1.615 9.922 hybrid contribution 1.282 1.029 -0.209 1.657 sum -8.159 3.617 -1.824 9.109 Atomic orbital electron populations 1.20513 0.84630 1.03878 1.04678 1.24683 1.01547 0.94854 1.05201 1.19915 0.90360 1.00960 1.07568 1.19379 0.93465 0.91219 0.95801 1.22958 0.97123 0.96479 1.19939 1.83803 0.95269 1.09577 1.77839 1.17251 0.89613 0.93252 0.87091 1.19801 1.04237 0.92819 1.28907 0.90474 1.26969 0.95619 0.96467 0.97388 1.69532 1.18413 1.19495 1.34033 0.85482 0.79329 0.78502 0.78130 1.17967 1.19044 1.18232 1.20363 0.97506 0.93161 1.20261 1.20595 0.95998 0.94892 0.90125 1.20967 0.91637 0.94594 1.26112 1.23656 0.94552 0.86438 0.68886 1.90431 1.52716 1.57452 1.42378 0.90882 0.88537 0.88533 0.81351 0.87980 0.87607 0.86805 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.34 71.24 0.74 -0.71 15 2 C -0.15 -4.28 6.42 24.63 0.16 -4.12 15 3 C -0.16 -4.95 9.62 21.76 0.21 -4.74 15 4 C 0.01 0.46 6.02 -20.03 -0.12 0.34 15 5 C -0.25 -11.37 6.36 23.51 0.15 -11.23 15 6 S 0.07 2.63 22.92 -56.49 -1.29 1.33 15 7 C 0.13 6.68 5.12 -21.20 -0.11 6.57 15 8 C -0.43 -22.40 9.29 23.35 0.22 -22.18 15 9 H 0.08 4.23 7.99 -2.91 -0.02 4.21 15 10 C 0.06 2.87 5.39 85.41 0.46 3.33 15 11 N -0.79 -38.77 13.91 21.90 0.30 -38.47 15 12 Si 0.96 40.43 24.51 68.60 1.68 42.11 15 13 H -0.25 -10.27 6.71 99.48 0.67 -9.60 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.26 -11.61 6.88 99.48 0.68 -10.93 15 16 C -0.29 -14.00 7.01 22.34 0.16 -13.84 15 17 C 0.00 0.14 9.47 22.16 0.21 0.35 15 18 C -0.33 -13.80 6.08 -18.36 -0.11 -13.91 15 19 C 0.40 14.35 11.28 69.93 0.79 15.14 15 20 O -0.55 -23.23 17.13 -3.33 -0.06 -23.28 15 21 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.17 3.90 7.44 -2.91 -0.02 3.88 15 25 H 0.31 13.27 8.29 -92.71 -0.77 12.50 15 26 H 0.11 4.98 4.69 -2.91 -0.01 4.97 15 27 H 0.11 4.93 7.60 -2.91 -0.02 4.91 15 28 H 0.12 3.24 7.34 -2.91 -0.02 3.22 15 Total: -1.00 -60.00 259.35 4.51 -55.49 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.13 Total: 7.80 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 2.75 Total: -44.98 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.30 Total: -38.47 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.68 Total: 42.11 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.29 Total: 1.33 kcal Total: -60.00 4.51 -55.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376631.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.141 kcal (2) G-P(sol) polarization free energy of solvation -60.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds