Wall clock time and date at job start Mon Mar 30 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37821 * 119.29539 * 2 1 4 4 C 1.38206 * 121.13045 * 180.02562 * 3 2 1 5 5 C 1.39177 * 120.24711 * 0.02562 * 4 3 2 6 6 C 1.46427 * 120.35066 * 180.02562 * 5 4 3 7 7 O 1.21370 * 120.00048 * 180.02562 * 6 5 4 8 8 C 1.47761 * 119.29818 * 359.97438 * 5 4 3 9 9 C 1.38918 * 128.84088 * 180.02562 * 8 5 4 10 10 C 1.37385 * 115.07185 * 179.97438 * 9 8 5 11 11 C 1.39681 * 124.88255 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00152 * 0.02562 * 11 10 9 13 13 C 1.40447 * 120.00289 * 180.02562 * 11 10 9 14 14 N 1.30600 * 119.99498 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00240 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46995 * 60.00400 * 15 13 11 17 17 H 1.48496 * 109.46883 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47027 * 299.99909 * 15 13 11 19 19 S 1.75481 * 110.22892 * 0.02562 * 10 9 8 20 20 C 1.39489 * 119.29974 * 180.02562 * 2 1 3 21 21 H 1.08992 * 109.47143 * 269.98044 * 1 2 3 22 22 H 1.09002 * 109.46967 * 29.98361 * 1 2 3 23 23 H 1.09001 * 109.46525 * 149.98199 * 1 2 3 24 24 H 1.08001 * 119.43490 * 359.97305 * 3 2 1 25 25 H 1.08003 * 119.87917 * 179.97438 * 4 3 2 26 26 H 1.08002 * 120.00447 * 0.02562 * 6 5 4 27 27 H 1.07997 * 122.46390 * 0.26965 * 9 8 5 28 28 H 0.96995 * 119.99790 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1815 1.2019 0.0000 4 6 3.5628 1.2462 -0.0005 5 6 4.3020 0.0670 -0.0016 6 6 5.7656 0.1112 -0.0016 7 8 6.4040 -0.9211 -0.0030 8 6 3.5943 -1.2301 -0.0016 9 6 4.1268 -2.5132 -0.0021 10 6 3.2006 -3.5279 -0.0014 11 6 3.5084 -4.8904 -0.0022 12 1 4.5397 -5.2110 -0.0031 13 6 2.4767 -5.8434 -0.0019 14 7 1.2296 -5.4556 -0.0014 15 14 2.8883 -7.6654 -0.0023 16 1 3.6806 -7.9941 1.2099 17 1 1.6317 -8.4567 -0.0025 18 1 3.6797 -7.9939 -1.2152 19 16 1.5754 -2.8660 -0.0008 20 6 2.1897 -1.2164 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3632 -0.8899 -0.5141 24 1 1.6209 2.1251 -0.0004 25 1 4.0706 2.1994 -0.0009 26 1 6.2772 1.0624 -0.0003 27 1 5.1906 -2.6993 0.0017 28 1 0.5171 -6.1137 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396376723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:01 Heat of formation + Delta-G solvation = -25.748779 kcal Electronic energy + Delta-G solvation = -14744.655226 eV Core-core repulsion = 12236.652737 eV Total energy + Delta-G solvation = -2508.002489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.63078 -37.09759 -35.23611 -33.40572 -31.74166 -29.13024 -26.94257 -25.53124 -22.58192 -22.08669 -20.19104 -18.94111 -17.70794 -16.29067 -15.67715 -15.12269 -14.32176 -13.94099 -13.73052 -13.48417 -13.04911 -12.95697 -12.81630 -12.03788 -11.97535 -11.73759 -11.39840 -11.38358 -11.20444 -10.71147 -10.47395 -10.35614 -10.08777 -9.47217 -9.13403 -8.64138 -8.22759 -7.45047 -7.35704 -6.46117 -4.78597 1.42299 2.22447 2.76528 2.78302 2.81467 3.19716 3.39055 3.47529 3.52832 3.74747 4.52874 5.04463 5.14240 5.54311 5.71154 5.84021 5.99640 6.09697 6.31782 6.35462 6.47323 6.60903 6.84078 7.03077 7.10287 7.30858 7.38413 7.48692 7.69721 7.79183 8.06031 8.21405 8.29064 8.47442 9.44861 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.008311 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.419670 B = 3368.204405 C = 4408.480248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.016 3.984 3 C -0.232 4.232 4 C -0.034 4.034 5 C -0.263 4.263 6 C 0.375 3.625 7 O -0.483 6.483 8 C 0.072 3.928 9 C -0.349 4.349 10 C 0.054 3.946 11 C -0.358 4.358 12 H 0.104 0.896 13 C 0.050 3.950 14 N -0.760 5.760 15 Si 0.943 3.057 16 H -0.256 1.256 17 H -0.271 1.271 18 H -0.256 1.256 19 S 0.135 5.865 20 C -0.283 4.283 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 3.334 0.029 4.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.012 3.988 3 C -0.253 4.253 4 C -0.054 4.054 5 C -0.266 4.266 6 C 0.239 3.761 7 O -0.361 6.361 8 C 0.063 3.937 9 C -0.373 4.373 10 C -0.066 4.066 11 C -0.391 4.391 12 H 0.122 0.878 13 C -0.174 4.174 14 N -0.385 5.385 15 Si 0.765 3.235 16 H -0.180 1.180 17 H -0.195 1.195 18 H -0.180 1.180 19 S 0.394 5.606 20 C -0.397 4.397 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.802 2.078 0.027 4.333 hybrid contribution 1.409 0.158 0.009 1.418 sum -2.393 2.236 0.036 3.275 Atomic orbital electron populations 1.20868 0.92729 1.02017 1.01805 1.19140 0.94261 0.91340 0.94073 1.20079 0.93894 0.95862 1.15446 1.20784 0.93928 0.95811 0.94915 1.21278 0.94456 0.92417 1.18497 1.23438 0.88777 0.92216 0.71712 1.90450 1.69458 1.38514 1.37632 1.18850 0.90836 0.92212 0.91756 1.19972 0.99522 0.89537 1.28226 1.21733 0.94662 0.96569 0.93683 1.19546 0.95712 0.89055 1.34778 0.87770 1.26492 0.94059 1.04532 0.92323 1.68601 1.00910 1.38860 1.30116 0.85727 0.79396 0.77591 0.80819 1.18036 1.19496 1.18040 1.84685 1.07026 0.89736 1.79126 1.23545 0.97358 1.00488 1.18297 0.91483 0.92097 0.91700 0.87663 0.87283 0.90776 0.85436 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.83 36.01 0.35 -1.63 15 2 C 0.02 0.34 5.90 -104.30 -0.62 -0.27 15 3 C -0.23 -4.40 9.57 -39.75 -0.38 -4.78 15 4 C -0.03 -0.64 9.75 -39.24 -0.38 -1.02 15 5 C -0.26 -5.81 6.08 -102.36 -0.62 -6.43 15 6 C 0.37 7.56 11.43 34.03 0.39 7.95 15 7 O -0.48 -11.53 15.26 5.48 0.08 -11.45 15 8 C 0.07 1.83 6.00 -104.92 -0.63 1.20 15 9 C -0.35 -9.40 9.44 -39.64 -0.37 -9.77 15 10 C 0.05 1.41 6.12 -39.35 -0.24 1.17 15 11 C -0.36 -8.81 9.27 -38.21 -0.35 -9.17 15 12 H 0.10 2.44 7.85 -52.49 -0.41 2.03 15 13 C 0.05 1.10 5.50 -17.24 -0.09 1.01 15 14 N -0.76 -17.10 10.58 55.58 0.59 -16.52 15 15 Si 0.94 16.40 29.56 -169.99 -5.03 11.38 15 16 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 17 H -0.27 -4.50 7.11 56.52 0.40 -4.10 15 18 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 19 S 0.13 3.27 19.35 -107.50 -2.08 1.19 15 20 C -0.28 -6.83 6.29 -38.28 -0.24 -7.07 15 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.06 0.87 8.07 -51.93 -0.42 0.45 15 23 H 0.06 1.12 7.52 -51.93 -0.39 0.73 15 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.11 1.60 8.06 -52.48 -0.42 1.17 15 26 H 0.08 1.13 8.06 -52.49 -0.42 0.71 15 27 H 0.13 3.55 6.24 -52.49 -0.33 3.22 15 28 H 0.31 6.08 8.29 -40.82 -0.34 5.74 15 LS Contribution 261.56 15.07 3.94 3.94 Total: -1.00 -28.47 261.56 -8.06 -36.53 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -2.37 Total: 3.74 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -3.19 Total: -28.81 kcal Atomic # 7 Polarization: -17.10 SS G_CDS: 0.59 Total: -16.52 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.08 Total: 1.19 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.47 -8.06 -36.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.781 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds