Wall clock time and date at job start Mon Mar 30 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37821 * 119.29539 * 2 1 4 4 C 1.38206 * 121.13045 * 180.02562 * 3 2 1 5 5 C 1.39177 * 120.24711 * 0.02562 * 4 3 2 6 6 C 1.46427 * 120.35066 * 180.02562 * 5 4 3 7 7 O 1.21370 * 120.00048 * 180.02562 * 6 5 4 8 8 C 1.47761 * 119.29818 * 359.97438 * 5 4 3 9 9 C 1.38918 * 128.84088 * 180.02562 * 8 5 4 10 10 C 1.37385 * 115.07185 * 179.97438 * 9 8 5 11 11 C 1.39681 * 124.88255 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00152 * 0.02562 * 11 10 9 13 13 C 1.40447 * 120.00289 * 180.02562 * 11 10 9 14 14 N 1.30600 * 119.99498 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00240 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46995 * 60.00400 * 15 13 11 17 17 H 1.48496 * 109.46883 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47027 * 299.99909 * 15 13 11 19 19 S 1.75481 * 110.22892 * 0.02562 * 10 9 8 20 20 C 1.39489 * 119.29974 * 180.02562 * 2 1 3 21 21 H 1.08992 * 109.47143 * 269.98044 * 1 2 3 22 22 H 1.09002 * 109.46967 * 29.98361 * 1 2 3 23 23 H 1.09001 * 109.46525 * 149.98199 * 1 2 3 24 24 H 1.08001 * 119.43490 * 359.97305 * 3 2 1 25 25 H 1.08003 * 119.87917 * 179.97438 * 4 3 2 26 26 H 1.08002 * 120.00447 * 0.02562 * 6 5 4 27 27 H 1.07997 * 122.46390 * 0.26965 * 9 8 5 28 28 H 0.96995 * 119.99790 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1815 1.2019 0.0000 4 6 3.5628 1.2462 -0.0005 5 6 4.3020 0.0670 -0.0016 6 6 5.7656 0.1112 -0.0016 7 8 6.4040 -0.9211 -0.0030 8 6 3.5943 -1.2301 -0.0016 9 6 4.1268 -2.5132 -0.0021 10 6 3.2006 -3.5279 -0.0014 11 6 3.5084 -4.8904 -0.0022 12 1 4.5397 -5.2110 -0.0031 13 6 2.4767 -5.8434 -0.0019 14 7 1.2296 -5.4556 -0.0014 15 14 2.8883 -7.6654 -0.0023 16 1 3.6806 -7.9941 1.2099 17 1 1.6317 -8.4567 -0.0025 18 1 3.6797 -7.9939 -1.2152 19 16 1.5754 -2.8660 -0.0008 20 6 2.1897 -1.2164 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3632 -0.8899 -0.5141 24 1 1.6209 2.1251 -0.0004 25 1 4.0706 2.1994 -0.0009 26 1 6.2772 1.0624 -0.0003 27 1 5.1906 -2.6993 0.0017 28 1 0.5171 -6.1137 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396376723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:01 Heat of formation + Delta-G solvation = -41.549766 kcal Electronic energy + Delta-G solvation = -14745.340408 eV Core-core repulsion = 12236.652737 eV Total energy + Delta-G solvation = -2508.687671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.30399 -38.78478 -36.98252 -35.12110 -33.29475 -30.88544 -28.46293 -27.27600 -24.29901 -23.65464 -21.85215 -20.71991 -19.47066 -17.94731 -17.31955 -16.72516 -15.96119 -15.56602 -15.33321 -15.15531 -14.68188 -14.51007 -14.40281 -13.63758 -13.61735 -13.37151 -13.03829 -12.93421 -12.70520 -12.21674 -12.04869 -11.92348 -11.77680 -11.12020 -10.99790 -10.29279 -9.94411 -9.22044 -9.03661 -8.26900 -6.64397 -0.22354 0.55785 1.30386 1.31573 1.39258 1.47761 1.79106 1.84304 1.85043 2.08637 2.79017 3.28393 3.68206 4.14692 4.20669 4.41005 4.56977 4.76289 4.80159 4.82204 4.94381 5.04508 5.18985 5.37977 5.44722 5.50315 5.68431 5.83979 5.90889 6.00095 6.29630 6.40476 6.49888 6.89494 7.81480 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.008311 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.419670 B = 3368.204405 C = 4408.480248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.007 3.993 3 C -0.222 4.222 4 C -0.018 4.018 5 C -0.290 4.290 6 C 0.378 3.622 7 O -0.530 6.530 8 C 0.037 3.963 9 C -0.392 4.392 10 C 0.020 3.980 11 C -0.394 4.394 12 H 0.099 0.901 13 C 0.018 3.982 14 N -0.781 5.781 15 Si 1.016 2.984 16 H -0.255 1.255 17 H -0.250 1.250 18 H -0.255 1.255 19 S 0.132 5.868 20 C -0.314 4.314 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.152 0.848 25 H 0.166 0.834 26 H 0.146 0.854 27 H 0.100 0.900 28 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 5.660 0.041 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.002 3.998 3 C -0.242 4.242 4 C -0.038 4.038 5 C -0.293 4.293 6 C 0.244 3.756 7 O -0.410 6.410 8 C 0.029 3.971 9 C -0.416 4.416 10 C -0.099 4.099 11 C -0.427 4.427 12 H 0.116 0.884 13 C -0.204 4.204 14 N -0.406 5.406 15 Si 0.833 3.167 16 H -0.179 1.179 17 H -0.173 1.173 18 H -0.179 1.179 19 S 0.391 5.609 20 C -0.428 4.428 21 H 0.099 0.901 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.170 0.830 25 H 0.183 0.817 26 H 0.162 0.838 27 H 0.118 0.882 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.899 4.447 0.039 6.617 hybrid contribution 1.715 -0.251 0.006 1.733 sum -3.184 4.196 0.045 5.268 Atomic orbital electron populations 1.20922 0.90046 1.03171 1.02996 1.19740 0.96528 0.90812 0.92705 1.20728 0.94457 0.96705 1.12302 1.21403 0.94123 0.96690 0.91578 1.21853 0.96188 0.92283 1.18960 1.24315 0.88157 0.93754 0.69333 1.90458 1.70071 1.40896 1.39577 1.19271 0.92183 0.93130 0.92499 1.19932 0.98315 0.91310 1.32004 1.22065 0.95802 0.97410 0.94647 1.19811 0.96504 0.89518 1.36880 0.88352 1.27413 0.93351 1.08577 0.91010 1.68608 1.01765 1.40785 1.29444 0.84704 0.79824 0.71591 0.80626 1.17899 1.17341 1.17911 1.84239 1.06096 0.90843 1.79735 1.23791 0.97214 1.01330 1.20429 0.90118 0.88588 0.92903 0.83046 0.81663 0.83803 0.88222 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.55 9.83 71.24 0.70 -2.85 15 2 C 0.01 0.26 5.90 -19.66 -0.12 0.14 15 3 C -0.22 -7.33 9.57 22.16 0.21 -7.11 15 4 C -0.02 -0.60 9.75 22.49 0.22 -0.38 15 5 C -0.29 -12.43 6.08 -18.40 -0.11 -12.55 15 6 C 0.38 14.70 11.43 69.95 0.80 15.50 15 7 O -0.53 -26.08 15.26 -3.31 -0.05 -26.13 15 8 C 0.04 1.96 6.00 -20.05 -0.12 1.84 15 9 C -0.39 -22.85 9.44 22.23 0.21 -22.64 15 10 C 0.02 1.16 6.12 22.42 0.14 1.30 15 11 C -0.39 -20.87 9.27 23.16 0.21 -20.66 15 12 H 0.10 5.06 7.85 -2.91 -0.02 5.04 15 13 C 0.02 0.81 5.50 85.41 0.47 1.28 15 14 N -0.78 -36.13 10.58 21.92 0.23 -35.90 15 15 Si 1.02 33.95 29.56 68.60 2.03 35.98 15 16 H -0.26 -8.41 7.11 99.48 0.71 -7.70 15 17 H -0.25 -7.48 7.11 99.48 0.71 -6.78 15 18 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 19 S 0.13 6.71 19.35 -56.49 -1.09 5.62 15 20 C -0.31 -15.41 6.29 23.11 0.15 -15.26 15 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.10 2.28 8.07 -2.39 -0.02 2.26 15 23 H 0.05 1.76 7.52 -2.39 -0.02 1.74 15 24 H 0.15 3.66 8.06 -2.91 -0.02 3.64 15 25 H 0.17 3.59 8.06 -2.91 -0.02 3.57 15 26 H 0.15 3.65 8.06 -2.91 -0.02 3.62 15 27 H 0.10 6.14 6.24 -2.91 -0.02 6.12 15 28 H 0.32 12.73 8.29 -92.71 -0.77 11.96 15 Total: -1.00 -68.84 261.56 5.06 -63.78 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.18 Total: 18.04 kcal Atomic # 6 Polarization: -64.15 SS G_CDS: 2.76 Total: -61.39 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.23 Total: -35.90 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Atomic # 16 Polarization: 6.71 SS G_CDS: -1.09 Total: 5.62 kcal Total: -68.84 5.06 -63.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396376723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.230 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds