Wall clock time and date at job start Mon Mar 30 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38116 * 119.96912 * 2 1 4 4 C 1.37881 * 120.42875 * 180.29972 * 3 2 1 5 5 C 1.39822 * 120.78245 * 359.70194 * 4 3 2 6 6 S 1.75812 * 130.12302 * 180.02562 * 5 4 3 7 7 C 1.69989 * 93.19786 * 179.97438 * 6 5 4 8 8 C 1.36663 * 111.86742 * 359.97438 * 7 6 5 9 9 C 1.40956 * 123.28701 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99568 * 221.97983 * 9 8 7 11 11 C 1.39715 * 120.00099 * 41.97792 * 9 8 7 12 12 N 1.31073 * 119.99891 * 7.26828 * 11 9 8 13 13 Si 1.86799 * 120.00071 * 187.26919 * 11 9 8 14 14 H 1.48506 * 109.46815 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47003 * 120.00060 * 13 11 9 16 16 H 1.48497 * 109.47090 * 240.00032 * 13 11 9 17 17 C 1.39234 * 119.71347 * 0.02562 * 5 4 3 18 18 C 1.39288 * 119.97213 * 179.72768 * 2 1 3 19 19 C 1.46757 * 120.04390 * 359.97438 * 18 2 1 20 20 O 1.21313 * 120.00002 * 355.29625 * 19 18 2 21 21 H 1.09008 * 109.46814 * 263.00926 * 1 2 3 22 22 H 1.08990 * 109.47428 * 23.01239 * 1 2 3 23 23 H 1.09002 * 109.46837 * 143.01538 * 1 2 3 24 24 H 1.08002 * 119.78242 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.61097 * 179.72162 * 4 3 2 26 26 H 1.07998 * 124.07027 * 179.97438 * 7 6 5 27 27 H 0.97003 * 119.99548 * 179.97438 * 12 11 9 28 28 H 1.07994 * 120.00325 * 175.56746 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5757 1.2076 -0.0062 5 6 4.3009 0.0121 -0.0064 6 16 6.0380 -0.2593 -0.0129 7 6 5.8697 -1.9508 -0.0074 8 6 4.5572 -2.3317 -0.0003 9 6 4.1427 -3.6790 0.0048 10 1 3.3164 -3.9920 -0.6162 11 6 4.8008 -4.6093 0.8131 12 7 5.7068 -4.2074 1.6708 13 14 4.3896 -6.4260 0.6714 14 1 3.3415 -6.6170 -0.3632 15 1 5.6088 -7.1808 0.2856 16 1 3.8919 -6.9242 1.9788 17 6 3.6250 -1.2051 -0.0007 18 6 2.2029 -1.2066 0.0057 19 6 1.4695 -2.4777 0.0123 20 8 0.2595 -2.4794 0.0990 21 1 -0.3633 -0.1251 1.0201 22 1 -0.3634 0.9458 -0.4017 23 1 -0.3633 -0.8209 -0.6183 24 1 1.6529 2.1295 -0.0004 25 1 4.1018 2.1507 -0.0107 26 1 6.7000 -2.6415 -0.0094 27 1 6.1634 -4.8533 2.2323 28 1 2.0072 -3.4118 -0.0555 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396378048.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:26 Heat of formation + Delta-G solvation = -14.791816 kcal Electronic energy + Delta-G solvation = -15095.201061 eV Core-core repulsion = 12587.673702 eV Total energy + Delta-G solvation = -2507.527359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03682 -39.09024 -36.93325 -34.45062 -32.83711 -30.78332 -28.91899 -27.18203 -25.01550 -23.68206 -22.00884 -20.95816 -18.99160 -18.26213 -17.07623 -16.90072 -16.22522 -15.67367 -15.44937 -15.31897 -15.06743 -14.57221 -14.17828 -13.81260 -13.38911 -13.09278 -13.02904 -12.91338 -12.84272 -12.43964 -12.26563 -11.82872 -11.47048 -11.32966 -11.01497 -10.26706 -10.13182 -9.11244 -8.58324 -8.34299 -6.34521 -0.40613 0.23128 1.05580 1.29074 1.40774 1.53430 1.53997 1.76810 1.88001 2.25374 2.80454 3.21580 3.58429 3.92127 3.95631 4.28876 4.39130 4.65753 4.71104 4.73620 4.87855 5.04880 5.11206 5.23745 5.29488 5.32403 5.50987 5.66908 5.92708 5.99586 6.40224 6.57268 6.80206 6.94484 8.49086 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.010760 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.208300 B = 2601.540304 C = 3876.091887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.037 4.037 3 C -0.132 4.132 4 C -0.047 4.047 5 C -0.186 4.186 6 S 0.085 5.915 7 C -0.334 4.334 8 C 0.060 3.940 9 C -0.491 4.491 10 H 0.089 0.911 11 C 0.036 3.964 12 N -0.850 5.850 13 Si 0.971 3.029 14 H -0.252 1.252 15 H -0.270 1.270 16 H -0.272 1.272 17 C -0.044 4.044 18 C -0.182 4.182 19 C 0.370 3.630 20 O -0.492 6.492 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.171 0.829 25 H 0.156 0.844 26 H 0.124 0.876 27 H 0.281 0.719 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 7.385 -2.526 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.040 4.040 3 C -0.152 4.152 4 C -0.070 4.070 5 C -0.301 4.301 6 S 0.349 5.651 7 C -0.469 4.469 8 C 0.050 3.950 9 C -0.525 4.525 10 H 0.107 0.893 11 C -0.176 4.176 12 N -0.479 5.479 13 Si 0.792 3.208 14 H -0.175 1.175 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.054 4.054 18 C -0.184 4.184 19 C 0.234 3.766 20 O -0.370 6.370 21 H 0.089 0.911 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.188 0.812 25 H 0.173 0.827 26 H 0.142 0.858 27 H 0.091 0.909 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.559 8.164 -2.322 9.203 hybrid contribution -0.490 -2.209 0.317 2.285 sum -4.049 5.954 -2.004 7.474 Atomic orbital electron populations 1.21012 0.88934 1.03683 1.02944 1.20430 0.97447 0.91847 0.94312 1.21180 0.93107 0.98221 1.02699 1.21075 0.94188 0.95747 0.95946 1.22958 0.98588 0.97391 1.11187 1.81529 1.00801 1.01924 1.80835 1.24352 1.00268 0.97190 1.25132 1.17674 0.89600 0.93078 0.94666 1.19226 1.16687 0.92198 1.24424 0.89327 1.26506 0.93469 1.04662 0.92997 1.69946 1.22158 1.37551 1.18259 0.85309 0.79285 0.76985 0.79185 1.17549 1.19493 1.19703 1.20006 0.93276 0.93502 0.98660 1.20547 0.91997 0.96450 1.09455 1.24924 0.88333 0.94785 0.68527 1.90344 1.17928 1.91092 1.37679 0.91088 0.89232 0.90819 0.81204 0.82657 0.85824 0.90940 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 8.70 71.24 0.62 -2.50 15 2 C -0.04 -1.27 5.91 -19.64 -0.12 -1.39 15 3 C -0.13 -3.75 9.63 22.16 0.21 -3.54 15 4 C -0.05 -1.48 10.05 22.57 0.23 -1.25 15 5 C -0.19 -7.62 6.43 22.89 0.15 -7.47 15 6 S 0.09 3.53 22.96 -56.49 -1.30 2.24 15 7 C -0.33 -16.93 9.49 67.45 0.64 -16.29 15 8 C 0.06 3.08 5.43 -20.91 -0.11 2.97 15 9 C -0.49 -25.22 7.46 23.29 0.17 -25.04 15 10 H 0.09 4.28 5.73 -2.91 -0.02 4.26 15 11 C 0.04 1.78 5.37 85.16 0.46 2.24 15 12 N -0.85 -45.30 11.92 21.80 0.26 -45.04 15 13 Si 0.97 38.56 29.57 68.60 2.03 40.59 15 14 H -0.25 -9.58 7.11 99.48 0.71 -8.87 15 15 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 16 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 17 C -0.04 -2.03 6.02 -19.98 -0.12 -2.15 15 18 C -0.18 -7.59 5.91 -19.81 -0.12 -7.71 15 19 C 0.37 15.50 10.94 70.05 0.77 16.26 15 20 O -0.49 -20.39 14.09 -3.13 -0.04 -20.43 15 21 H 0.07 2.02 8.14 -2.38 -0.02 2.00 15 22 H 0.09 1.87 8.03 -2.39 -0.02 1.85 15 23 H 0.07 2.37 5.83 -2.39 -0.01 2.35 15 24 H 0.17 3.25 8.05 -2.91 -0.02 3.22 15 25 H 0.16 3.70 8.06 -2.91 -0.02 3.68 15 26 H 0.12 6.71 7.55 -2.91 -0.02 6.69 15 27 H 0.28 13.78 8.30 -92.71 -0.77 13.01 15 28 H 0.13 5.35 4.22 -2.91 -0.01 5.34 15 Total: -1.00 -59.55 255.12 4.93 -54.62 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.20 Total: 13.89 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 2.78 Total: -45.86 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.26 Total: -45.04 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.04 Total: -20.43 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.30 Total: 2.24 kcal Total: -59.55 4.93 -54.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378048.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.831 kcal (2) G-P(sol) polarization free energy of solvation -59.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds