Wall clock time and date at job start Mon Mar 30 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39084 * 119.99466 * 2 1 4 4 S 1.76038 * 130.18311 * 359.97438 * 3 2 1 5 5 C 1.75464 * 91.66975 * 180.02562 * 4 3 2 6 6 C 1.41831 * 124.76045 * 180.02562 * 5 4 3 7 7 O 1.21385 * 120.00059 * 180.02562 * 6 5 4 8 8 C 1.35664 * 110.48396 * 359.97438 * 5 4 3 9 9 C 1.39638 * 115.39139 * 0.02562 * 8 5 4 10 10 C 1.42374 * 128.33193 * 179.97438 * 9 8 5 11 11 C 1.34985 * 120.88740 * 180.02562 * 10 9 8 12 12 C 1.40311 * 119.99105 * 180.29024 * 2 1 3 13 13 C 1.40857 * 120.17394 * 359.97438 * 12 2 1 14 14 H 1.07994 * 119.99930 * 329.38164 * 13 12 2 15 15 C 1.40149 * 119.99794 * 149.38155 * 13 12 2 16 16 N 1.30706 * 119.99833 * 162.55262 * 15 13 12 17 17 Si 1.86798 * 119.99900 * 342.54624 * 15 13 12 18 18 H 1.48495 * 109.47044 * 95.37508 * 17 15 13 19 19 H 1.48503 * 109.46957 * 215.37009 * 17 15 13 20 20 H 1.48497 * 109.47488 * 335.37126 * 17 15 13 21 21 H 1.09000 * 109.47219 * 89.99561 * 1 2 3 22 22 H 1.09005 * 109.47070 * 209.99874 * 1 2 3 23 23 H 1.08998 * 109.46665 * 329.99320 * 1 2 3 24 24 H 1.07998 * 119.99513 * 0.02562 * 6 5 4 25 25 H 1.08003 * 122.30512 * 180.02562 * 8 5 4 26 26 H 1.07995 * 119.55462 * 0.05444 * 10 9 8 27 27 H 1.07992 * 119.79153 * 179.97438 * 11 10 9 28 28 H 0.97001 * 120.00070 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2023 1.2046 0.0000 4 16 1.6054 2.8606 -0.0006 5 6 3.2380 3.5035 -0.0009 6 6 3.5635 4.8839 -0.0009 7 8 4.7260 5.2334 -0.0016 8 6 4.1453 2.4949 0.0000 9 6 3.6080 1.2061 0.0004 10 6 4.2990 -0.0387 0.0008 11 6 3.6225 -1.2068 0.0007 12 6 2.2084 -1.2152 -0.0062 13 6 1.5076 -2.4371 -0.0118 14 1 0.5410 -2.5074 0.4646 15 6 2.0648 -3.5616 -0.6357 16 7 1.6065 -4.7548 -0.3624 17 14 3.4624 -3.3550 -1.8577 18 1 4.7604 -3.5476 -1.1625 19 1 3.3265 -4.3627 -2.9401 20 1 3.4115 -1.9909 -2.4422 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5139 24 1 2.7771 5.6241 -0.0003 25 1 5.2100 2.6764 0.0004 26 1 5.3789 -0.0485 0.0018 27 1 4.1646 -2.1408 0.0006 28 1 1.9924 -5.5331 -0.7939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396378987.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:21 Heat of formation + Delta-G solvation = -12.177522 kcal Electronic energy + Delta-G solvation = -14730.589322 eV Core-core repulsion = 12223.175328 eV Total energy + Delta-G solvation = -2507.413995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02543 -38.25753 -35.24158 -33.46373 -31.79164 -29.94272 -27.01212 -25.88255 -23.43486 -22.33592 -19.97088 -19.43408 -17.88079 -16.85569 -15.93752 -15.18970 -15.09996 -14.39018 -13.94456 -13.81159 -13.45441 -13.21820 -12.92014 -12.33427 -12.13432 -11.85575 -11.62492 -11.40648 -11.23350 -10.87878 -10.47771 -10.17170 -10.00340 -9.73290 -9.47748 -9.40903 -8.69690 -7.73014 -7.49480 -7.01577 -4.85247 0.88317 2.30214 2.34567 2.43167 2.75381 2.81266 2.94572 3.00983 3.47794 3.60061 4.12218 4.87627 4.91239 5.54985 5.78107 5.83907 5.90037 6.10436 6.22823 6.26345 6.43783 6.46179 6.59613 6.64466 6.69510 7.05368 7.25520 7.26135 7.36887 7.58771 7.79682 7.92899 8.14926 8.23053 9.47811 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.007157 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.634905 B = 3911.077146 C = 4475.890252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.183 4.183 3 C -0.035 4.035 4 S 0.044 5.956 5 C -0.377 4.377 6 C 0.412 3.588 7 O -0.500 6.500 8 C 0.034 3.966 9 C -0.232 4.232 10 C -0.028 4.028 11 C -0.207 4.207 12 C 0.112 3.888 13 C -0.390 4.390 14 H 0.107 0.893 15 C 0.078 3.922 16 N -0.768 5.768 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.238 1.238 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 4.181 -1.075 4.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.193 4.193 3 C -0.150 4.150 4 S 0.306 5.694 5 C -0.491 4.491 6 C 0.277 3.723 7 O -0.380 6.380 8 C 0.003 3.997 9 C -0.236 4.236 10 C -0.048 4.048 11 C -0.226 4.226 12 C 0.105 3.895 13 C -0.417 4.417 14 H 0.125 0.875 15 C -0.147 4.147 16 N -0.388 5.388 17 Si 0.737 3.263 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.161 1.161 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.148 0.852 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.801 4.852 -1.077 5.034 hybrid contribution 1.831 -0.930 -0.441 2.101 sum 1.030 3.922 -1.519 4.330 Atomic orbital electron populations 1.20411 0.92131 1.00927 1.00737 1.18999 0.94647 0.89591 1.16050 1.22377 0.95765 0.95457 1.01450 1.83395 1.06242 0.97944 1.81811 1.23110 0.97209 0.99401 1.29417 1.21479 0.91058 0.88856 0.70912 1.90495 1.23806 1.83900 1.39814 1.20543 0.99369 0.90717 0.89035 1.17710 0.92166 0.93029 1.20688 1.20415 0.97902 0.90953 0.95575 1.20760 0.94785 0.96920 1.10149 1.17495 0.91097 0.92382 0.88557 1.19865 1.05304 0.90918 1.25631 0.87526 1.26448 0.97434 0.94041 0.96811 1.69598 1.36544 0.99736 1.32953 0.86259 0.79697 0.80815 0.79487 1.18803 1.20803 1.16126 0.92909 0.91568 0.93894 0.90030 0.85194 0.87621 0.87109 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.46 36.01 0.34 -1.27 15 2 C -0.18 -3.96 5.97 -103.53 -0.62 -4.58 15 3 C -0.03 -0.73 6.29 -38.39 -0.24 -0.97 15 4 S 0.04 0.80 22.49 -107.50 -2.42 -1.62 15 5 C -0.38 -7.01 6.19 -39.13 -0.24 -7.25 15 6 C 0.41 6.97 11.46 32.11 0.37 7.34 15 7 O -0.50 -9.84 17.45 5.47 0.10 -9.74 15 8 C 0.03 0.67 9.78 -39.98 -0.39 0.28 15 9 C -0.23 -4.86 5.87 -106.91 -0.63 -5.49 15 10 C -0.03 -0.57 9.99 -39.15 -0.39 -0.96 15 11 C -0.21 -4.44 7.04 -39.53 -0.28 -4.71 15 12 C 0.11 2.52 5.07 -106.92 -0.54 1.97 15 13 C -0.39 -8.99 8.88 -37.87 -0.34 -9.32 15 14 H 0.11 2.52 6.52 -52.49 -0.34 2.18 15 15 C 0.08 1.73 5.41 -17.31 -0.09 1.64 15 16 N -0.77 -17.37 13.92 55.56 0.77 -16.59 15 17 Si 0.91 17.87 24.52 -169.99 -4.17 13.71 15 18 H -0.26 -4.93 6.72 56.52 0.38 -4.55 15 19 H -0.28 -5.32 7.11 56.52 0.40 -4.91 15 20 H -0.24 -4.91 6.86 56.52 0.39 -4.52 15 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.24 6.29 -51.93 -0.33 0.91 15 23 H 0.04 0.74 7.57 -51.93 -0.39 0.35 15 24 H 0.08 1.09 8.06 -52.49 -0.42 0.67 15 25 H 0.13 2.37 7.93 -52.48 -0.42 1.95 15 26 H 0.11 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.11 2.26 4.80 -52.49 -0.25 2.01 15 28 H 0.30 5.99 8.29 -40.82 -0.34 5.65 15 LS Contribution 256.15 15.07 3.86 3.86 Total: -1.00 -24.97 256.15 -7.08 -32.05 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -2.17 Total: 1.66 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -3.05 Total: -23.33 kcal Atomic # 7 Polarization: -17.37 SS G_CDS: 0.77 Total: -16.59 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.10 Total: -9.74 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -4.17 Total: 13.71 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.42 Total: -1.62 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -24.97 -7.08 -32.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378987.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.875 kcal (2) G-P(sol) polarization free energy of solvation -24.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds