Wall clock time and date at job start Mon Mar 30 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39084 * 119.99466 * 2 1 4 4 S 1.76038 * 130.18311 * 359.97438 * 3 2 1 5 5 C 1.75464 * 91.66975 * 180.02562 * 4 3 2 6 6 C 1.41831 * 124.76045 * 180.02562 * 5 4 3 7 7 O 1.21385 * 120.00059 * 180.02562 * 6 5 4 8 8 C 1.35664 * 110.48396 * 359.97438 * 5 4 3 9 9 C 1.39638 * 115.39139 * 0.02562 * 8 5 4 10 10 C 1.42374 * 128.33193 * 179.97438 * 9 8 5 11 11 C 1.34985 * 120.88740 * 180.02562 * 10 9 8 12 12 C 1.40311 * 119.99105 * 180.29024 * 2 1 3 13 13 C 1.40857 * 120.17394 * 359.97438 * 12 2 1 14 14 H 1.07994 * 119.99930 * 329.38164 * 13 12 2 15 15 C 1.40149 * 119.99794 * 149.38155 * 13 12 2 16 16 N 1.30706 * 119.99833 * 162.55262 * 15 13 12 17 17 Si 1.86798 * 119.99900 * 342.54624 * 15 13 12 18 18 H 1.48495 * 109.47044 * 95.37508 * 17 15 13 19 19 H 1.48503 * 109.46957 * 215.37009 * 17 15 13 20 20 H 1.48497 * 109.47488 * 335.37126 * 17 15 13 21 21 H 1.09000 * 109.47219 * 89.99561 * 1 2 3 22 22 H 1.09005 * 109.47070 * 209.99874 * 1 2 3 23 23 H 1.08998 * 109.46665 * 329.99320 * 1 2 3 24 24 H 1.07998 * 119.99513 * 0.02562 * 6 5 4 25 25 H 1.08003 * 122.30512 * 180.02562 * 8 5 4 26 26 H 1.07995 * 119.55462 * 0.05444 * 10 9 8 27 27 H 1.07992 * 119.79153 * 179.97438 * 11 10 9 28 28 H 0.97001 * 120.00070 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2023 1.2046 0.0000 4 16 1.6054 2.8606 -0.0006 5 6 3.2380 3.5035 -0.0009 6 6 3.5635 4.8839 -0.0009 7 8 4.7260 5.2334 -0.0016 8 6 4.1453 2.4949 0.0000 9 6 3.6080 1.2061 0.0004 10 6 4.2990 -0.0387 0.0008 11 6 3.6225 -1.2068 0.0007 12 6 2.2084 -1.2152 -0.0062 13 6 1.5076 -2.4371 -0.0118 14 1 0.5410 -2.5074 0.4646 15 6 2.0648 -3.5616 -0.6357 16 7 1.6065 -4.7548 -0.3624 17 14 3.4624 -3.3550 -1.8577 18 1 4.7604 -3.5476 -1.1625 19 1 3.3265 -4.3627 -2.9401 20 1 3.4115 -1.9909 -2.4422 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8899 0.5139 24 1 2.7771 5.6241 -0.0003 25 1 5.2100 2.6764 0.0004 26 1 5.3789 -0.0485 0.0018 27 1 4.1646 -2.1408 0.0006 28 1 1.9924 -5.5331 -0.7939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396378987.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:20 Heat of formation + Delta-G solvation = -24.656125 kcal Electronic energy + Delta-G solvation = -14731.130435 eV Core-core repulsion = 12223.175328 eV Total energy + Delta-G solvation = -2507.955107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58105 -39.77889 -36.82858 -35.06650 -33.37130 -31.53314 -28.57905 -27.43469 -24.99987 -23.92107 -21.54847 -20.95418 -19.49130 -18.34358 -17.52819 -16.69578 -16.66224 -15.94092 -15.45396 -15.36171 -15.00226 -14.77978 -14.50401 -13.88275 -13.70275 -13.38874 -13.22145 -12.96291 -12.80368 -12.42815 -12.04004 -11.73672 -11.60013 -11.31990 -11.03588 -10.85981 -10.27003 -9.34820 -9.11370 -8.53858 -6.54093 -0.63686 0.65472 0.79613 0.88588 1.19480 1.24635 1.39956 1.45045 1.97767 2.04509 2.50468 3.25845 3.56471 4.02548 4.24868 4.29145 4.46564 4.56941 4.66657 4.72610 4.88124 4.93400 5.03411 5.09907 5.16022 5.47963 5.64695 5.66924 5.71456 5.97818 6.12885 6.50785 6.54451 6.58408 7.92324 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.007157 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.634905 B = 3911.077146 C = 4475.890252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.202 4.202 3 C -0.066 4.066 4 S 0.101 5.899 5 C -0.370 4.370 6 C 0.420 3.580 7 O -0.520 6.520 8 C 0.016 3.984 9 C -0.236 4.236 10 C -0.033 4.033 11 C -0.221 4.221 12 C 0.100 3.900 13 C -0.428 4.428 14 H 0.084 0.916 15 C 0.054 3.946 16 N -0.807 5.807 17 Si 0.956 3.044 18 H -0.249 1.249 19 H -0.271 1.271 20 H -0.256 1.256 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.135 0.865 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 6.896 -1.432 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.211 4.211 3 C -0.182 4.182 4 S 0.364 5.636 5 C -0.485 4.485 6 C 0.285 3.715 7 O -0.401 6.401 8 C -0.015 4.015 9 C -0.241 4.241 10 C -0.053 4.053 11 C -0.240 4.240 12 C 0.094 3.906 13 C -0.456 4.456 14 H 0.102 0.898 15 C -0.167 4.167 16 N -0.430 5.430 17 Si 0.779 3.221 18 H -0.173 1.173 19 H -0.197 1.197 20 H -0.179 1.179 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.151 0.849 25 H 0.160 0.840 26 H 0.153 0.847 27 H 0.134 0.866 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.002 7.561 -1.427 7.695 hybrid contribution 1.605 -1.311 -0.281 2.091 sum 1.607 6.250 -1.707 6.675 Atomic orbital electron populations 1.20380 0.90858 1.01265 1.01183 1.19318 0.95907 0.89781 1.16135 1.22749 0.96450 0.97169 1.01837 1.83179 1.04999 0.95113 1.80287 1.23695 0.97647 1.00554 1.26572 1.22125 0.91588 0.88654 0.69092 1.90509 1.25375 1.84048 1.40184 1.20698 1.00399 0.90314 0.90123 1.18056 0.92379 0.93955 1.19714 1.20743 0.99508 0.90371 0.94655 1.20896 0.94504 0.97762 1.10811 1.17681 0.91879 0.92555 0.88505 1.19736 1.05198 0.92134 1.28535 0.89849 1.26914 0.98780 0.93602 0.97417 1.69607 1.38358 1.00328 1.34675 0.85616 0.78470 0.79785 0.78252 1.17334 1.19698 1.17949 0.92343 0.92336 0.92355 0.84874 0.83974 0.84670 0.86612 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.03 9.46 71.24 0.67 -2.36 15 2 C -0.20 -8.74 5.97 -19.16 -0.11 -8.86 15 3 C -0.07 -2.69 6.29 23.04 0.15 -2.55 15 4 S 0.10 3.32 22.49 -56.49 -1.27 2.05 15 5 C -0.37 -12.29 6.19 22.56 0.14 -12.15 15 6 C 0.42 12.17 11.46 68.71 0.79 12.96 15 7 O -0.52 -18.38 17.45 -3.36 -0.06 -18.44 15 8 C 0.02 0.58 9.78 22.01 0.22 0.79 15 9 C -0.24 -9.47 5.87 -21.34 -0.13 -9.59 15 10 C -0.03 -1.28 9.99 22.55 0.23 -1.05 15 11 C -0.22 -9.42 7.04 22.30 0.16 -9.27 15 12 C 0.10 4.62 5.07 -21.35 -0.11 4.51 15 13 C -0.43 -20.71 8.88 23.38 0.21 -20.50 15 14 H 0.08 4.26 6.52 -2.91 -0.02 4.24 15 15 C 0.05 2.49 5.41 85.32 0.46 2.95 15 16 N -0.81 -38.01 13.92 21.86 0.30 -37.71 15 17 Si 0.96 37.06 24.52 68.60 1.68 38.74 15 18 H -0.25 -8.95 6.72 99.48 0.67 -8.28 15 19 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 20 H -0.26 -10.50 6.86 99.48 0.68 -9.82 15 21 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.06 2.28 6.29 -2.38 -0.02 2.26 15 23 H 0.06 1.95 7.57 -2.39 -0.02 1.93 15 24 H 0.14 2.67 8.06 -2.91 -0.02 2.65 15 25 H 0.14 4.75 7.93 -2.91 -0.02 4.73 15 26 H 0.14 4.35 8.06 -2.91 -0.02 4.33 15 27 H 0.12 4.72 4.80 -2.91 -0.01 4.70 15 28 H 0.30 12.71 8.29 -92.71 -0.77 11.94 15 Total: -1.00 -53.33 256.15 4.46 -48.87 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.13 Total: 11.59 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 2.67 Total: -45.11 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.30 Total: -37.71 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.06 Total: -18.44 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 1.68 Total: 38.74 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.27 Total: 2.05 kcal Total: -53.33 4.46 -48.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396378987.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.217 kcal (2) G-P(sol) polarization free energy of solvation -53.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds