Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35628 * 119.57398 * 2 1 4 4 C 1.41232 * 120.12598 * 180.02562 * 3 2 1 5 5 C 1.41267 * 120.01341 * 179.97438 * 4 3 2 6 6 H 1.07991 * 120.00347 * 154.42066 * 5 4 3 7 7 C 1.39867 * 119.99540 * 334.41164 * 5 4 3 8 8 N 1.30892 * 120.00308 * 343.17428 * 7 5 4 9 9 Si 1.86806 * 119.99689 * 163.16671 * 7 5 4 10 10 H 1.48498 * 109.46888 * 90.00712 * 9 7 5 11 11 H 1.48500 * 109.46832 * 210.00326 * 9 7 5 12 12 H 1.48504 * 109.47140 * 330.00225 * 9 7 5 13 13 C 1.39776 * 119.98080 * 359.97438 * 4 3 2 14 14 C 1.40997 * 120.01124 * 359.97438 * 13 4 3 15 15 C 1.40465 * 128.66253 * 180.02562 * 14 13 4 16 16 C 1.34048 * 115.49951 * 179.97438 * 15 14 13 17 17 C 1.41804 * 124.62855 * 180.02562 * 16 15 14 18 18 O 1.21383 * 119.99851 * 179.97438 * 17 16 15 19 19 S 1.75446 * 110.74440 * 0.02562 * 16 15 14 20 20 C 1.40475 * 119.57303 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47006 * 90.00405 * 1 2 3 22 22 H 1.08997 * 109.47615 * 210.00609 * 1 2 3 23 23 H 1.09005 * 109.46884 * 330.00896 * 1 2 3 24 24 H 1.07998 * 119.94029 * 0.27160 * 3 2 1 25 25 H 0.96999 * 120.00128 * 179.97438 * 8 7 5 26 26 H 1.07996 * 119.99472 * 180.02562 * 13 4 3 27 27 H 1.07996 * 122.25326 * 359.96249 * 15 14 13 28 28 H 1.07993 * 120.00343 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1764 1.1796 0.0000 4 6 3.5887 1.1932 -0.0005 5 6 4.2835 2.4232 -0.0011 6 1 5.2837 2.4786 0.4023 7 6 3.6760 3.5692 -0.5243 8 7 2.6267 3.4582 -1.2989 9 14 4.3619 5.2585 -0.1174 10 1 5.3789 5.6370 -1.1311 11 1 3.2608 6.2548 -0.1250 12 1 4.9912 5.2264 1.2273 13 6 4.2988 -0.0107 -0.0005 14 6 3.6054 -1.2385 0.0005 15 6 4.1289 -2.5419 0.0012 16 6 3.2213 -3.5283 0.0028 17 6 3.5343 -4.9114 0.0042 18 8 2.6430 -5.7354 0.0060 19 16 1.5931 -2.8747 0.0028 20 6 2.2003 -1.2217 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6286 2.1103 0.0044 25 1 2.2052 4.2530 -1.6614 26 1 5.3787 -0.0006 -0.0005 27 1 5.1913 -2.7363 0.0004 28 1 4.5656 -5.2317 0.0037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396379622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = -10.723285 kcal Electronic energy + Delta-G solvation = -14568.749360 eV Core-core repulsion = 12061.398426 eV Total energy + Delta-G solvation = -2507.350934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.94096 -38.28821 -35.26976 -33.65163 -31.41809 -29.30852 -26.25507 -25.65933 -24.34202 -21.66858 -19.89974 -19.82990 -17.28470 -16.65837 -15.87178 -15.30096 -14.97850 -14.15636 -13.93099 -13.77071 -13.35095 -13.15143 -12.66621 -12.13453 -11.96265 -11.75314 -11.54733 -11.25486 -11.11190 -10.85001 -10.33149 -10.20794 -9.98195 -9.68552 -9.51082 -9.24985 -8.50958 -7.53397 -7.06836 -6.77607 -4.56472 0.82678 2.28518 2.45272 2.67720 2.85877 2.95695 2.96861 3.03075 3.51147 3.78108 4.33455 4.76404 5.32972 5.57859 5.59098 5.82427 5.93914 6.15555 6.21382 6.25016 6.45056 6.55784 6.70219 6.89393 6.99515 7.25855 7.33174 7.50918 7.66503 7.73917 7.93910 8.29728 8.61553 8.65435 9.96772 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.006057 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.435097 B = 4621.368850 C = 5171.709660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.068 4.068 3 C -0.090 4.090 4 C 0.108 3.892 5 C -0.456 4.456 6 H 0.083 0.917 7 C 0.075 3.925 8 N -0.793 5.793 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.275 1.275 12 H -0.259 1.259 13 C -0.206 4.206 14 C -0.067 4.067 15 C -0.025 4.025 16 C -0.309 4.309 17 C 0.409 3.591 18 O -0.480 6.480 19 S 0.080 5.920 20 C -0.194 4.194 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.131 0.869 25 H 0.284 0.716 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -3.310 1.640 3.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.072 4.072 3 C -0.111 4.111 4 C 0.105 3.895 5 C -0.486 4.486 6 H 0.101 0.899 7 C -0.143 4.143 8 N -0.418 5.418 9 Si 0.736 3.264 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.183 1.183 13 C -0.230 4.230 14 C -0.073 4.073 15 C -0.061 4.061 16 C -0.425 4.425 17 C 0.270 3.730 18 O -0.357 6.357 19 S 0.346 5.654 20 C -0.310 4.310 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.149 0.851 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.118 -4.335 1.495 4.720 hybrid contribution 1.832 1.626 -0.011 2.450 sum 0.714 -2.709 1.484 3.170 Atomic orbital electron populations 1.20707 0.92833 1.01313 1.01410 1.18709 0.94305 0.91018 1.03206 1.21178 0.94902 0.95941 0.99073 1.17432 0.91592 0.92367 0.88130 1.19550 1.01987 0.92116 1.34909 0.89911 1.25955 0.94163 1.01787 0.92432 1.69799 1.17982 1.32353 1.21680 0.86243 0.79475 0.80402 0.80314 1.19318 1.19947 1.18308 1.20852 0.97509 0.89807 1.14822 1.17984 0.92021 0.93162 1.04103 1.20565 0.99484 0.91503 0.94548 1.23522 0.98912 0.99622 1.20434 1.21953 0.94477 0.86048 0.70533 1.90535 1.52174 1.55919 1.37075 1.83635 1.05165 0.97443 1.79159 1.22397 0.95963 0.95326 1.17298 0.92050 0.92988 0.91999 0.85122 0.90450 0.87992 0.84555 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.85 36.01 0.35 -1.58 15 2 C -0.07 -1.50 5.86 -104.71 -0.61 -2.11 15 3 C -0.09 -2.14 8.19 -39.38 -0.32 -2.46 15 4 C 0.11 2.66 5.55 -107.03 -0.59 2.07 15 5 C -0.46 -11.11 9.03 -37.82 -0.34 -11.45 15 6 H 0.08 1.93 7.90 -52.49 -0.41 1.51 15 7 C 0.08 1.73 5.14 -17.34 -0.09 1.64 15 8 N -0.79 -18.88 10.95 55.54 0.61 -18.27 15 9 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 15 10 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 11 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 12 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 13 C -0.21 -4.71 9.82 -37.96 -0.37 -5.09 15 14 C -0.07 -1.45 5.86 -107.15 -0.63 -2.08 15 15 C -0.02 -0.44 10.01 -40.22 -0.40 -0.85 15 16 C -0.31 -5.49 6.13 -39.69 -0.24 -5.73 15 17 C 0.41 6.26 11.34 32.09 0.36 6.63 15 18 O -0.48 -8.90 17.60 5.47 0.10 -8.80 15 19 S 0.08 1.57 22.19 -107.50 -2.39 -0.82 15 20 C -0.19 -4.25 6.34 -37.88 -0.24 -4.49 15 21 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.05 0.89 7.57 -51.93 -0.39 0.50 15 23 H 0.06 1.04 8.07 -51.93 -0.42 0.63 15 24 H 0.13 3.16 6.19 -52.49 -0.32 2.83 15 25 H 0.28 6.15 8.30 -40.82 -0.34 5.81 15 26 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 27 H 0.14 1.91 8.06 -52.49 -0.42 1.48 15 28 H 0.10 1.07 8.06 -52.49 -0.42 0.65 15 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -26.99 265.11 -8.22 -35.21 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -2.38 Total: 1.96 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -3.13 Total: -25.50 kcal Atomic # 7 Polarization: -18.88 SS G_CDS: 0.61 Total: -18.27 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.10 Total: -8.80 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.39 Total: -0.82 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.99 -8.22 -35.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.487 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds