Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35628 * 119.57398 * 2 1 4 4 C 1.41232 * 120.12598 * 180.02562 * 3 2 1 5 5 C 1.41267 * 120.01341 * 179.97438 * 4 3 2 6 6 H 1.07991 * 120.00347 * 154.42066 * 5 4 3 7 7 C 1.39867 * 119.99540 * 334.41164 * 5 4 3 8 8 N 1.30892 * 120.00308 * 343.17428 * 7 5 4 9 9 Si 1.86806 * 119.99689 * 163.16671 * 7 5 4 10 10 H 1.48498 * 109.46888 * 90.00712 * 9 7 5 11 11 H 1.48500 * 109.46832 * 210.00326 * 9 7 5 12 12 H 1.48504 * 109.47140 * 330.00225 * 9 7 5 13 13 C 1.39776 * 119.98080 * 359.97438 * 4 3 2 14 14 C 1.40997 * 120.01124 * 359.97438 * 13 4 3 15 15 C 1.40465 * 128.66253 * 180.02562 * 14 13 4 16 16 C 1.34048 * 115.49951 * 179.97438 * 15 14 13 17 17 C 1.41804 * 124.62855 * 180.02562 * 16 15 14 18 18 O 1.21383 * 119.99851 * 179.97438 * 17 16 15 19 19 S 1.75446 * 110.74440 * 0.02562 * 16 15 14 20 20 C 1.40475 * 119.57303 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.47006 * 90.00405 * 1 2 3 22 22 H 1.08997 * 109.47615 * 210.00609 * 1 2 3 23 23 H 1.09005 * 109.46884 * 330.00896 * 1 2 3 24 24 H 1.07998 * 119.94029 * 0.27160 * 3 2 1 25 25 H 0.96999 * 120.00128 * 179.97438 * 8 7 5 26 26 H 1.07996 * 119.99472 * 180.02562 * 13 4 3 27 27 H 1.07996 * 122.25326 * 359.96249 * 15 14 13 28 28 H 1.07993 * 120.00343 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1764 1.1796 0.0000 4 6 3.5887 1.1932 -0.0005 5 6 4.2835 2.4232 -0.0011 6 1 5.2837 2.4786 0.4023 7 6 3.6760 3.5692 -0.5243 8 7 2.6267 3.4582 -1.2989 9 14 4.3619 5.2585 -0.1174 10 1 5.3789 5.6370 -1.1311 11 1 3.2608 6.2548 -0.1250 12 1 4.9912 5.2264 1.2273 13 6 4.2988 -0.0107 -0.0005 14 6 3.6054 -1.2385 0.0005 15 6 4.1289 -2.5419 0.0012 16 6 3.2213 -3.5283 0.0028 17 6 3.5343 -4.9114 0.0042 18 8 2.6430 -5.7354 0.0060 19 16 1.5931 -2.8747 0.0028 20 6 2.2003 -1.2217 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.6286 2.1103 0.0044 25 1 2.2052 4.2530 -1.6614 26 1 5.3787 -0.0006 -0.0005 27 1 5.1913 -2.7363 0.0004 28 1 4.5656 -5.2317 0.0037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396379622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = -24.196915 kcal Electronic energy + Delta-G solvation = -14569.333621 eV Core-core repulsion = 12061.398426 eV Total energy + Delta-G solvation = -2507.935195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40731 -39.79568 -36.86395 -35.31220 -33.09397 -30.89433 -27.88843 -27.35347 -25.82061 -23.23604 -21.45135 -21.33811 -19.01043 -18.19096 -17.36967 -16.80540 -16.55661 -15.54457 -15.53428 -15.28783 -14.89936 -14.69648 -14.21686 -13.75952 -13.50155 -13.32173 -13.16378 -12.79142 -12.68050 -12.43288 -11.92440 -11.83626 -11.59951 -11.25267 -10.94404 -10.89386 -10.14328 -9.22290 -8.77032 -8.41786 -6.36858 -0.60865 0.74851 0.79656 1.17201 1.28407 1.41001 1.46621 1.55278 2.07489 2.20317 2.63165 3.54956 3.59197 4.08296 4.24867 4.38519 4.58958 4.66877 4.71012 4.75070 4.87232 4.96170 5.04833 5.19090 5.33132 5.60112 5.62403 5.78918 5.98860 6.19681 6.45020 6.51816 6.85866 6.86945 8.27744 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.006057 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.435097 B = 4621.368850 C = 5171.709660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.074 4.074 3 C -0.118 4.118 4 C 0.081 3.919 5 C -0.490 4.490 6 H 0.083 0.917 7 C 0.038 3.962 8 N -0.824 5.824 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.268 1.268 12 H -0.258 1.258 13 C -0.220 4.220 14 C -0.079 4.079 15 C -0.022 4.022 16 C -0.301 4.301 17 C 0.418 3.582 18 O -0.512 6.512 19 S 0.069 5.931 20 C -0.219 4.219 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.291 0.709 26 H 0.113 0.887 27 H 0.183 0.817 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -4.458 1.826 5.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.078 4.078 3 C -0.139 4.139 4 C 0.077 3.923 5 C -0.519 4.519 6 H 0.101 0.899 7 C -0.178 4.178 8 N -0.449 5.449 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.192 1.192 12 H -0.182 1.182 13 C -0.243 4.243 14 C -0.085 4.085 15 C -0.056 4.056 16 C -0.417 4.417 17 C 0.281 3.719 18 O -0.389 6.389 19 S 0.334 5.666 20 C -0.335 4.335 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.136 0.864 25 H 0.102 0.898 26 H 0.131 0.869 27 H 0.200 0.800 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.044 -5.495 1.679 5.746 hybrid contribution 1.462 1.786 -0.077 2.309 sum 1.506 -3.710 1.602 4.312 Atomic orbital electron populations 1.20715 0.90617 1.02348 1.02142 1.19089 0.96169 0.90831 1.01707 1.21106 0.94935 0.96177 1.01728 1.17793 0.92303 0.93364 0.88821 1.19800 1.02482 0.93176 1.36435 0.89887 1.26746 0.94290 1.05043 0.91699 1.69853 1.19088 1.33618 1.22370 0.85191 0.78866 0.75713 0.79944 1.18752 1.19194 1.18180 1.21050 0.98163 0.90048 1.15039 1.18389 0.92141 0.94450 1.03493 1.20819 1.01806 0.89399 0.93595 1.24069 0.97335 1.01344 1.18979 1.22776 0.96615 0.84068 0.68465 1.90548 1.53805 1.56280 1.38312 1.83657 1.07334 0.96040 1.79519 1.22695 0.96687 0.96404 1.17682 0.91351 0.91827 0.91031 0.86409 0.89824 0.86876 0.80031 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.74 9.85 71.24 0.70 -3.04 15 2 C -0.07 -3.32 5.86 -19.92 -0.12 -3.44 15 3 C -0.12 -5.86 8.19 22.40 0.18 -5.68 15 4 C 0.08 4.10 5.55 -21.43 -0.12 3.98 15 5 C -0.49 -24.58 9.03 23.41 0.21 -24.37 15 6 H 0.08 3.98 7.90 -2.92 -0.02 3.95 15 7 C 0.04 1.78 5.14 85.23 0.44 2.22 15 8 N -0.82 -40.34 10.95 21.82 0.24 -40.10 15 9 Si 0.98 35.64 29.59 68.60 2.03 37.67 15 10 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 11 H -0.27 -9.29 7.11 99.48 0.71 -8.59 15 12 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 13 C -0.22 -10.13 9.82 23.32 0.23 -9.90 15 14 C -0.08 -3.33 5.86 -21.50 -0.13 -3.45 15 15 C -0.02 -0.70 10.01 21.86 0.22 -0.48 15 16 C -0.30 -9.73 6.13 22.20 0.14 -9.59 15 17 C 0.42 10.92 11.34 68.70 0.78 11.70 15 18 O -0.51 -17.31 17.60 -3.35 -0.06 -17.37 15 19 S 0.07 2.62 22.19 -56.49 -1.25 1.37 15 20 C -0.22 -9.57 6.34 23.37 0.15 -9.42 15 21 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.06 2.16 7.57 -2.39 -0.02 2.14 15 23 H 0.07 2.45 8.07 -2.38 -0.02 2.43 15 24 H 0.12 6.00 6.19 -2.91 -0.02 5.98 15 25 H 0.29 12.87 8.30 -92.71 -0.77 12.10 15 26 H 0.11 4.76 8.06 -2.91 -0.02 4.74 15 27 H 0.18 4.14 8.06 -2.91 -0.02 4.12 15 28 H 0.17 2.37 8.06 -2.91 -0.02 2.34 15 Total: -1.00 -60.17 265.11 4.82 -55.34 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.18 Total: 14.57 kcal Atomic # 6 Polarization: -54.16 SS G_CDS: 2.68 Total: -51.48 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.24 Total: -40.10 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.06 Total: -17.37 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.25 Total: 1.37 kcal Total: -60.17 4.82 -55.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396379622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.148 kcal (2) G-P(sol) polarization free energy of solvation -60.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds