Wall clock time and date at job start Mon Mar 30 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34054 * 122.25280 * 2 1 4 4 C 1.41814 * 124.62847 * 359.97438 * 3 2 1 5 5 O 1.21383 * 119.99787 * 180.02562 * 4 3 2 6 6 S 1.75440 * 110.74032 * 179.97438 * 3 2 1 7 7 C 1.76093 * 91.70137 * 359.97438 * 6 3 2 8 8 C 1.40515 * 130.25465 * 180.02562 * 7 6 3 9 9 C 1.35607 * 120.84850 * 179.20956 * 8 7 6 10 10 C 1.41268 * 120.12212 * 0.73703 * 9 8 7 11 11 C 1.41271 * 120.00425 * 179.50190 * 10 9 8 12 12 H 1.08004 * 119.99748 * 154.98340 * 11 10 9 13 13 C 1.39854 * 120.00236 * 334.97708 * 11 10 9 14 14 N 1.30894 * 120.00518 * 342.09148 * 13 11 10 15 15 Si 1.86807 * 120.00083 * 162.08881 * 13 11 10 16 16 H 1.48493 * 109.47048 * 94.64723 * 15 13 11 17 17 H 1.48502 * 109.47013 * 214.64867 * 15 13 11 18 18 H 1.48501 * 109.47030 * 334.64813 * 15 13 11 19 19 C 1.39733 * 119.98254 * 359.52283 * 10 9 8 20 20 C 1.40465 * 122.25230 * 179.71048 * 2 1 3 21 21 H 1.08998 * 109.47134 * 90.02088 * 1 2 3 22 22 H 1.08997 * 109.47168 * 210.02461 * 1 2 3 23 23 H 1.08999 * 109.46985 * 330.02006 * 1 2 3 24 24 H 1.07995 * 120.00047 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.57272 * 359.97265 * 8 7 6 26 26 H 1.08005 * 119.93673 * 180.26167 * 9 8 7 27 27 H 0.96999 * 120.00406 * 179.97438 * 14 13 11 28 28 H 1.08003 * 119.98983 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2224 1.1337 0.0000 4 6 1.6656 2.4379 -0.0005 5 8 2.3941 3.4088 -0.0009 6 16 3.9415 0.7835 0.0007 7 6 3.6415 -0.9516 0.0018 8 6 4.5435 -2.0291 0.0033 9 6 4.0972 -3.3095 0.0200 10 6 2.7100 -3.5768 0.0205 11 6 2.2479 -4.9118 0.0273 12 1 1.2700 -5.1427 0.4234 13 6 3.0565 -5.9344 -0.4791 14 7 4.0634 -5.6448 -1.2637 15 14 2.6997 -7.7136 -0.0356 16 1 1.8581 -8.3282 -1.0934 17 1 3.9777 -8.4615 0.0771 18 1 1.9797 -7.7654 1.2622 19 6 1.7953 -2.5205 0.0139 20 6 2.2566 -1.1879 0.0060 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 0.5934 2.5673 -0.0005 25 1 5.6059 -1.8348 0.0035 26 1 4.8036 -4.1265 0.0252 27 1 4.6245 -6.3540 -1.6146 28 1 0.7348 -2.7248 0.0147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396380200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:26 Heat of formation + Delta-G solvation = -23.627182 kcal Electronic energy + Delta-G solvation = -14588.488131 eV Core-core repulsion = 12080.577641 eV Total energy + Delta-G solvation = -2507.910489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60019 -39.72924 -37.23296 -35.10656 -32.02681 -30.93426 -29.45009 -27.38301 -25.28534 -23.13405 -22.05391 -20.56879 -19.17234 -18.33501 -17.39280 -16.89726 -16.32224 -15.71309 -15.53205 -15.42552 -14.72069 -14.46853 -14.35594 -14.14820 -13.56573 -13.18739 -12.95125 -12.82931 -12.67101 -12.42317 -11.93363 -11.80542 -11.60180 -11.28346 -10.98711 -10.87004 -10.19417 -9.26982 -8.79327 -8.46170 -6.37794 -0.63855 0.73010 0.79661 1.14657 1.26867 1.41161 1.46735 1.56150 2.03005 2.19630 2.61284 3.53909 3.58227 3.99317 4.16424 4.33136 4.42021 4.67740 4.79729 4.84235 4.91386 5.02188 5.15617 5.21868 5.33775 5.52788 5.60446 5.74808 5.94342 6.15126 6.44127 6.49261 6.82972 6.84189 8.25435 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.047238 B = 0.005904 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.606596 B = 4741.403289 C = 5250.040091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.009 3.991 3 C -0.310 4.310 4 C 0.417 3.583 5 O -0.512 6.512 6 S 0.053 5.947 7 C -0.222 4.222 8 C -0.098 4.098 9 C -0.117 4.117 10 C 0.080 3.920 11 C -0.486 4.486 12 H 0.086 0.914 13 C 0.038 3.962 14 N -0.824 5.824 15 Si 0.983 3.017 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.256 1.256 19 C -0.210 4.210 20 C -0.074 4.074 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.166 0.834 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.292 0.708 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 4.066 1.818 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.007 4.007 3 C -0.425 4.425 4 C 0.280 3.720 5 O -0.390 6.390 6 S 0.320 5.680 7 C -0.337 4.337 8 C -0.121 4.121 9 C -0.139 4.139 10 C 0.076 3.924 11 C -0.515 4.515 12 H 0.104 0.896 13 C -0.178 4.178 14 N -0.449 5.449 15 Si 0.804 3.196 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.180 1.180 19 C -0.233 4.233 20 C -0.080 4.080 21 H 0.115 0.885 22 H 0.095 0.905 23 H 0.123 0.877 24 H 0.182 0.818 25 H 0.130 0.870 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.332 5.463 1.670 7.169 hybrid contribution -0.622 -1.982 -0.068 2.078 sum -4.954 3.481 1.602 6.263 Atomic orbital electron populations 1.20909 0.86330 1.04975 1.04457 1.19698 0.98985 0.89683 0.92349 1.23745 0.97034 1.00642 1.21124 1.22702 0.96890 0.83714 0.68714 1.90540 1.66644 1.43315 1.38483 1.83687 1.05791 0.98209 1.80361 1.22729 0.97229 0.96387 1.17400 1.20052 0.97590 0.91494 1.02936 1.21224 0.96833 0.94918 1.00898 1.17789 0.91691 0.93909 0.88977 1.19826 1.03516 0.91585 1.36612 0.89567 1.26781 0.93298 1.06107 0.91642 1.69856 1.15199 1.37611 1.22245 0.85162 0.78993 0.75511 0.79955 1.18724 1.19277 1.17991 1.21042 0.98519 0.89490 1.14220 1.18261 0.91569 0.94470 1.03734 0.88536 0.90489 0.87693 0.81849 0.87042 0.86404 0.89738 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.56 71.24 0.68 -1.72 15 2 C 0.01 0.32 5.87 -20.27 -0.12 0.20 15 3 C -0.31 -10.48 6.13 22.20 0.14 -10.35 15 4 C 0.42 11.48 10.86 68.70 0.75 12.23 15 5 O -0.51 -17.89 17.60 -3.35 -0.06 -17.95 15 6 S 0.05 2.11 22.92 -56.49 -1.29 0.82 15 7 C -0.22 -9.96 6.52 23.37 0.15 -9.81 15 8 C -0.10 -4.58 9.98 22.22 0.22 -4.36 15 9 C -0.12 -5.88 8.60 22.41 0.19 -5.68 15 10 C 0.08 4.03 5.55 -21.43 -0.12 3.91 15 11 C -0.49 -24.08 9.02 23.41 0.21 -23.87 15 12 H 0.09 4.04 7.91 -2.91 -0.02 4.02 15 13 C 0.04 1.75 5.12 85.22 0.44 2.19 15 14 N -0.82 -40.25 10.98 21.81 0.24 -40.01 15 15 Si 0.98 35.23 29.60 68.60 2.03 37.26 15 16 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 17 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 18 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 19 C -0.21 -9.55 9.41 23.32 0.22 -9.33 15 20 C -0.07 -3.18 5.84 -21.51 -0.13 -3.30 15 21 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.08 1.76 7.32 -2.39 -0.02 1.75 15 23 H 0.10 1.53 6.79 -2.39 -0.02 1.51 15 24 H 0.17 2.57 6.80 -2.91 -0.02 2.55 15 25 H 0.11 4.70 8.06 -2.91 -0.02 4.68 15 26 H 0.12 6.03 6.18 -2.91 -0.02 6.02 15 27 H 0.29 12.86 8.30 -92.71 -0.77 12.09 15 28 H 0.12 4.83 7.40 -2.91 -0.02 4.81 15 Total: -1.00 -60.51 261.77 4.74 -55.77 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.19 Total: 14.04 kcal Atomic # 6 Polarization: -52.55 SS G_CDS: 2.63 Total: -49.91 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.24 Total: -40.01 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.06 Total: -17.95 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.29 Total: 0.82 kcal Total: -60.51 4.74 -55.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.138 kcal (2) G-P(sol) polarization free energy of solvation -60.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds