Wall clock time and date at job start Mon Mar 30 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34231 * 122.24427 * 2 1 4 4 C 1.41777 * 124.71649 * 0.02562 * 3 2 1 5 5 O 1.21382 * 120.00304 * 179.97438 * 4 3 2 6 6 S 1.75491 * 110.56743 * 179.97438 * 3 2 1 7 7 C 1.75979 * 91.61896 * 0.02562 * 6 3 2 8 8 C 1.39867 * 109.68019 * 0.02562 * 7 6 3 9 9 C 1.41812 * 118.71998 * 179.97438 * 8 7 6 10 10 C 1.37567 * 120.94449 * 0.25768 * 9 8 7 11 11 C 1.38028 * 120.89323 * 359.56368 * 10 9 8 12 12 C 1.40346 * 119.90180 * 0.38709 * 11 10 9 13 13 C 1.40865 * 120.11655 * 179.80811 * 12 11 10 14 14 H 1.08001 * 119.99924 * 204.98876 * 13 12 11 15 15 C 1.39977 * 120.00340 * 24.98389 * 13 12 11 16 16 N 1.30849 * 119.99453 * 17.89991 * 15 13 12 17 17 Si 1.86803 * 120.00280 * 197.90532 * 15 13 12 18 18 H 1.48497 * 109.47148 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47136 * 120.00063 * 17 15 13 20 20 H 1.48504 * 109.46621 * 240.00163 * 17 15 13 21 21 H 1.09000 * 109.46676 * 270.02512 * 1 2 3 22 22 H 1.09004 * 109.47220 * 30.01518 * 1 2 3 23 23 H 1.08998 * 109.47039 * 150.02264 * 1 2 3 24 24 H 1.08003 * 119.99938 * 359.97438 * 4 3 2 25 25 H 1.08006 * 119.52470 * 179.97438 * 9 8 7 26 26 H 1.07999 * 119.55478 * 179.74792 * 10 9 8 27 27 H 1.08001 * 120.04803 * 180.22253 * 11 10 9 28 28 H 0.97002 * 119.99695 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2232 1.1353 0.0000 4 6 1.6683 2.4400 0.0005 5 8 2.3981 3.4099 0.0009 6 16 3.9418 0.7801 0.0007 7 6 3.6345 -0.9526 0.0002 8 6 2.2555 -1.1864 -0.0010 9 6 1.7915 -2.5265 -0.0022 10 6 2.6750 -3.5810 0.0033 11 6 4.0380 -3.3635 0.0010 12 6 4.5373 -2.0519 0.0012 13 6 5.9275 -1.8248 0.0030 14 1 6.3232 -0.9009 0.3983 15 6 6.7961 -2.7965 -0.5076 16 7 6.3362 -3.7385 -1.2906 17 14 8.6118 -2.7484 -0.0709 18 1 8.8755 -1.5923 0.8229 19 1 8.9875 -4.0066 0.6225 20 1 9.4156 -2.6078 -1.3116 21 1 -0.3633 0.0005 1.0277 22 1 -0.3634 0.8899 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 0.5963 2.5709 0.0005 25 1 0.7293 -2.7220 -0.0028 26 1 2.2970 -4.5926 0.0064 27 1 4.7193 -4.2015 0.0017 28 1 6.9380 -4.4121 -1.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396380448.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:28 Heat of formation + Delta-G solvation = -24.789590 kcal Electronic energy + Delta-G solvation = -14744.394147 eV Core-core repulsion = 12236.433252 eV Total energy + Delta-G solvation = -2507.960895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54624 -39.68380 -37.14655 -35.17047 -32.01418 -30.88292 -29.46844 -27.15767 -25.27162 -23.23429 -22.06769 -20.52426 -19.22225 -18.13315 -17.25486 -16.92958 -16.44123 -15.69284 -15.63372 -15.39564 -14.63241 -14.55583 -14.44185 -13.71152 -13.63072 -13.26838 -13.02538 -12.76726 -12.67988 -12.21763 -11.97832 -11.82314 -11.56721 -11.22403 -11.12852 -10.84058 -10.07075 -9.20883 -8.80870 -8.52553 -6.41420 -0.59314 0.78500 0.86853 1.10641 1.33299 1.42824 1.44785 1.48064 2.04390 2.14276 2.65225 3.50801 3.57023 4.08882 4.19802 4.35391 4.57574 4.63887 4.79562 4.91272 4.94426 5.07812 5.11273 5.24438 5.37266 5.51242 5.70856 5.84393 6.03037 6.16852 6.46705 6.52120 6.73227 6.80726 8.19069 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.008084 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.011745 B = 3462.992417 C = 4400.375094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.012 3.988 3 C -0.321 4.321 4 C 0.417 3.583 5 O -0.516 6.516 6 S 0.048 5.952 7 C -0.214 4.214 8 C -0.087 4.087 9 C -0.188 4.188 10 C -0.095 4.095 11 C -0.185 4.185 12 C 0.104 3.896 13 C -0.490 4.490 14 H 0.067 0.933 15 C 0.042 3.958 16 N -0.809 5.809 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.255 1.255 20 H -0.263 1.263 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.084 0.916 24 H 0.169 0.831 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 1.695 1.749 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.004 4.004 3 C -0.437 4.437 4 C 0.280 3.720 5 O -0.394 6.394 6 S 0.317 5.683 7 C -0.330 4.330 8 C -0.094 4.094 9 C -0.210 4.210 10 C -0.114 4.114 11 C -0.209 4.209 12 C 0.098 3.902 13 C -0.519 4.519 14 H 0.085 0.915 15 C -0.175 4.175 16 N -0.434 5.434 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.179 1.179 20 H -0.188 1.188 21 H 0.119 0.881 22 H 0.118 0.882 23 H 0.103 0.897 24 H 0.184 0.816 25 H 0.157 0.843 26 H 0.146 0.854 27 H 0.130 0.870 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.524 3.016 1.593 8.261 hybrid contribution 0.234 -1.240 -0.014 1.262 sum -7.291 1.775 1.578 7.668 Atomic orbital electron populations 1.20918 0.85665 1.05143 1.04661 1.19729 0.99150 0.89434 0.92136 1.23933 0.97150 1.01014 1.21572 1.22720 0.96886 0.83692 0.68681 1.90540 1.66689 1.43529 1.38654 1.83997 1.05797 0.99745 1.78805 1.23424 0.97495 0.96191 1.15879 1.18366 0.91002 0.95248 1.04803 1.20733 0.99317 0.89209 1.11733 1.20884 0.93018 0.98860 0.98629 1.21234 0.95058 0.95827 1.08800 1.17350 0.92577 0.90392 0.89864 1.19669 0.91785 1.03520 1.36903 0.91465 1.26667 1.05883 0.93256 0.91694 1.69839 1.39953 1.12247 1.21386 0.85214 0.75806 0.79771 0.79380 1.18818 1.17947 1.18770 0.88136 0.88170 0.89747 0.81551 0.84271 0.85438 0.87042 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.56 71.24 0.68 -1.41 15 2 C 0.01 0.41 5.87 -20.28 -0.12 0.29 15 3 C -0.32 -11.64 6.14 22.23 0.14 -11.51 15 4 C 0.42 12.34 10.86 68.70 0.75 13.09 15 5 O -0.52 -19.53 17.61 -3.35 -0.06 -19.59 15 6 S 0.05 2.21 22.52 -56.49 -1.27 0.93 15 7 C -0.21 -10.66 6.38 23.66 0.15 -10.51 15 8 C -0.09 -3.69 5.84 -21.51 -0.13 -3.81 15 9 C -0.19 -7.27 9.67 23.00 0.22 -7.05 15 10 C -0.09 -4.00 9.96 22.06 0.22 -3.78 15 11 C -0.19 -9.33 8.68 22.73 0.20 -9.13 15 12 C 0.10 5.59 5.59 -21.13 -0.12 5.47 15 13 C -0.49 -26.71 8.83 23.33 0.21 -26.51 15 14 H 0.07 3.70 7.75 -2.91 -0.02 3.68 15 15 C 0.04 2.10 5.12 85.26 0.44 2.53 15 16 N -0.81 -41.02 10.98 21.84 0.24 -40.78 15 17 Si 0.98 38.20 29.60 68.60 2.03 40.23 15 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 15 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 21 H 0.10 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.10 1.35 6.80 -2.39 -0.02 1.33 15 23 H 0.08 1.57 7.32 -2.39 -0.02 1.55 15 24 H 0.17 2.78 6.82 -2.91 -0.02 2.76 15 25 H 0.14 4.16 7.38 -2.91 -0.02 4.14 15 26 H 0.13 4.49 8.06 -2.91 -0.02 4.46 15 27 H 0.11 5.81 6.16 -2.91 -0.02 5.79 15 28 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 Total: -1.00 -66.01 261.25 4.77 -61.25 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.19 Total: 10.27 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 2.63 Total: -52.32 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.06 Total: -19.59 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.27 Total: 0.93 kcal Total: -66.01 4.77 -61.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380448.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.459 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds