Wall clock time and date at job start Mon Mar 30 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41024 * 119.99712 * 2 1 4 4 C 1.40470 * 128.65368 * 0.02562 * 3 2 1 5 5 C 1.34052 * 115.49403 * 180.02562 * 4 3 2 6 6 C 1.41805 * 124.63061 * 180.02562 * 5 4 3 7 7 O 1.21388 * 119.99933 * 0.02562 * 6 5 4 8 8 S 1.75446 * 110.73974 * 359.97438 * 5 4 3 9 9 C 1.40491 * 118.77721 * 180.02562 * 3 2 1 10 10 C 1.40512 * 120.25194 * 0.03784 * 9 3 2 11 11 C 1.35604 * 120.85137 * 359.63865 * 10 9 3 12 12 C 1.39741 * 119.99428 * 179.97438 * 2 1 3 13 13 C 1.41267 * 120.00429 * 359.97243 * 12 2 1 14 14 H 1.08002 * 120.00285 * 333.39570 * 13 12 2 15 15 C 1.39867 * 119.99992 * 153.39347 * 13 12 2 16 16 N 1.30894 * 120.00022 * 335.16767 * 15 13 12 17 17 Si 1.86803 * 120.00042 * 155.16148 * 15 13 12 18 18 H 1.48497 * 109.46985 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47254 * 300.00051 * 17 15 13 20 20 H 1.48494 * 109.47383 * 60.00424 * 17 15 13 21 21 H 1.09006 * 109.46854 * 270.01788 * 1 2 3 22 22 H 1.09000 * 109.46998 * 30.01583 * 1 2 3 23 23 H 1.09000 * 109.47384 * 150.02011 * 1 2 3 24 24 H 1.07998 * 122.25384 * 359.96907 * 4 3 2 25 25 H 1.08005 * 120.00013 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.57147 * 179.97438 * 10 9 3 27 27 H 1.07993 * 119.93816 * 180.31976 * 11 10 9 28 28 H 0.96996 * 119.99706 * 354.21215 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2213 0.0000 4 6 1.7007 2.5296 0.0005 5 6 2.6176 3.5075 -0.0002 6 6 2.3176 4.8935 0.0007 7 8 1.1617 5.2643 0.0026 8 16 4.2394 2.8385 -0.0008 9 6 3.6166 1.1914 -0.0006 10 6 4.2985 -0.0371 -0.0019 11 6 3.6181 -1.2101 0.0047 12 6 2.2056 -1.2103 0.0005 13 6 1.4992 -2.4336 0.0017 14 1 0.5051 -2.4829 0.4210 15 6 2.0872 -3.5812 -0.5403 16 7 3.0212 -3.4704 -1.4506 17 14 1.5397 -5.2719 0.0352 18 1 2.3116 -6.3147 -0.6873 19 1 1.7812 -5.4003 1.4948 20 1 0.0915 -5.4450 -0.2440 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 0.6402 2.7340 0.0005 25 1 3.1175 5.6192 -0.0004 26 1 5.3785 -0.0473 -0.0027 27 1 4.1572 -2.1459 0.0088 28 1 3.2468 -2.5983 -1.8103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396380563.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:34 Heat of formation + Delta-G solvation = -15.054385 kcal Electronic energy + Delta-G solvation = -14727.039290 eV Core-core repulsion = 12219.500545 eV Total energy + Delta-G solvation = -2507.538745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.28808 -38.38978 -35.37623 -33.11334 -31.86664 -29.20086 -26.70040 -25.16897 -24.52314 -21.82153 -20.25560 -19.43583 -17.78900 -17.00936 -15.72786 -15.48926 -14.57858 -14.26866 -14.20853 -13.81799 -13.67262 -13.12230 -12.53691 -12.20239 -11.91591 -11.87926 -11.56178 -11.32432 -11.08701 -10.54127 -10.32224 -10.22582 -10.03170 -9.75941 -9.56351 -9.18391 -8.56546 -7.74742 -7.49554 -6.94659 -4.62976 0.72765 2.16823 2.37164 2.53039 2.65404 3.04958 3.09508 3.25434 3.40729 3.87062 4.26884 4.58687 5.12643 5.51391 5.59594 5.81913 6.02161 6.07989 6.26434 6.33254 6.48326 6.50469 6.71741 6.77566 7.13759 7.15017 7.23454 7.48597 7.52689 7.58762 7.87045 7.93647 8.43386 8.60124 9.83464 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.042004 B = 0.006328 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.447821 B = 4423.446748 C = 4978.990478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.170 4.170 3 C -0.057 4.057 4 C -0.009 4.009 5 C -0.303 4.303 6 C 0.411 3.589 7 O -0.475 6.475 8 S 0.051 5.949 9 C -0.205 4.205 10 C -0.076 4.076 11 C -0.145 4.145 12 C 0.090 3.910 13 C -0.507 4.507 14 H 0.084 0.916 15 C 0.038 3.962 16 N -0.791 5.791 17 Si 1.065 2.935 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.274 1.274 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.065 0.935 24 H 0.138 0.862 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 4.683 1.868 5.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.176 4.176 3 C -0.062 4.062 4 C -0.043 4.043 5 C -0.419 4.419 6 C 0.272 3.728 7 O -0.352 6.352 8 S 0.315 5.685 9 C -0.321 4.321 10 C -0.098 4.098 11 C -0.166 4.166 12 C 0.086 3.914 13 C -0.535 4.535 14 H 0.102 0.898 15 C -0.185 4.185 16 N -0.414 5.414 17 Si 0.888 3.112 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.199 1.199 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.156 0.844 25 H 0.112 0.888 26 H 0.120 0.880 27 H 0.136 0.864 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.387 3.978 1.643 4.921 hybrid contribution -1.362 1.004 0.144 1.699 sum 1.024 4.982 1.787 5.391 Atomic orbital electron populations 1.20395 0.92695 1.01000 1.00079 1.19616 0.94308 0.90232 1.13396 1.17855 0.91892 0.92665 1.03831 1.20634 1.00110 0.91292 0.92312 1.23275 0.98357 0.99902 1.20365 1.21807 0.91595 0.88774 0.70574 1.90537 1.24652 1.83015 1.37010 1.83275 1.05347 0.98841 1.81075 1.22193 0.95710 0.95198 1.18961 1.19769 0.97715 0.90317 1.02017 1.21097 0.94837 0.96516 1.04144 1.17356 0.91253 0.92464 0.90297 1.20567 1.04025 0.93538 1.35389 0.89813 1.27111 0.92764 1.05747 0.92834 1.70523 1.22773 1.31274 1.16819 0.83617 0.77063 0.73222 0.77277 1.19732 1.19831 1.19917 0.93562 0.94003 0.91586 0.84431 0.88834 0.88044 0.86355 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 9.18 36.00 0.33 -1.37 15 2 C -0.17 -3.90 6.01 -103.01 -0.62 -4.52 15 3 C -0.06 -1.25 5.82 -107.15 -0.62 -1.87 15 4 C -0.01 -0.17 9.17 -40.21 -0.37 -0.54 15 5 C -0.30 -5.37 6.13 -39.69 -0.24 -5.61 15 6 C 0.41 6.33 11.46 32.09 0.37 6.70 15 7 O -0.48 -8.66 17.41 5.46 0.10 -8.56 15 8 S 0.05 0.88 23.21 -107.50 -2.50 -1.61 15 9 C -0.21 -4.37 6.52 -37.88 -0.25 -4.62 15 10 C -0.08 -1.62 9.98 -39.67 -0.40 -2.02 15 11 C -0.14 -3.36 7.85 -39.38 -0.31 -3.67 15 12 C 0.09 2.19 5.25 -107.04 -0.56 1.63 15 13 C -0.51 -12.23 7.99 -37.82 -0.30 -12.53 15 14 H 0.08 1.96 6.92 -52.49 -0.36 1.60 15 15 C 0.04 0.88 4.93 -17.34 -0.09 0.79 15 16 N -0.79 -19.39 12.34 55.54 0.69 -18.70 15 17 Si 1.07 19.89 30.00 -169.99 -5.10 14.79 15 18 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.04 0.76 7.15 -51.93 -0.37 0.39 15 23 H 0.07 1.34 6.74 -51.93 -0.35 0.99 15 24 H 0.14 2.57 7.20 -52.49 -0.38 2.19 15 25 H 0.10 1.06 8.06 -52.48 -0.42 0.64 15 26 H 0.10 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.12 2.77 6.55 -52.49 -0.34 2.43 15 28 H 0.30 7.50 6.70 -40.82 -0.27 7.23 15 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -26.02 260.10 -8.10 -34.12 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.14 Total: 3.69 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: -3.06 Total: -27.64 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.69 Total: -18.70 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.10 Total: -8.56 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.10 Total: 14.79 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.61 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.02 -8.10 -34.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380563.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.066 kcal (2) G-P(sol) polarization free energy of solvation -26.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds