Wall clock time and date at job start Mon Mar 30 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41024 * 119.99712 * 2 1 4 4 C 1.40470 * 128.65368 * 0.02562 * 3 2 1 5 5 C 1.34052 * 115.49403 * 180.02562 * 4 3 2 6 6 C 1.41805 * 124.63061 * 180.02562 * 5 4 3 7 7 O 1.21388 * 119.99933 * 0.02562 * 6 5 4 8 8 S 1.75446 * 110.73974 * 359.97438 * 5 4 3 9 9 C 1.40491 * 118.77721 * 180.02562 * 3 2 1 10 10 C 1.40512 * 120.25194 * 0.03784 * 9 3 2 11 11 C 1.35604 * 120.85137 * 359.63865 * 10 9 3 12 12 C 1.39741 * 119.99428 * 179.97438 * 2 1 3 13 13 C 1.41267 * 120.00429 * 359.97243 * 12 2 1 14 14 H 1.08002 * 120.00285 * 333.39570 * 13 12 2 15 15 C 1.39867 * 119.99992 * 153.39347 * 13 12 2 16 16 N 1.30894 * 120.00022 * 335.16767 * 15 13 12 17 17 Si 1.86803 * 120.00042 * 155.16148 * 15 13 12 18 18 H 1.48497 * 109.46985 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47254 * 300.00051 * 17 15 13 20 20 H 1.48494 * 109.47383 * 60.00424 * 17 15 13 21 21 H 1.09006 * 109.46854 * 270.01788 * 1 2 3 22 22 H 1.09000 * 109.46998 * 30.01583 * 1 2 3 23 23 H 1.09000 * 109.47384 * 150.02011 * 1 2 3 24 24 H 1.07998 * 122.25384 * 359.96907 * 4 3 2 25 25 H 1.08005 * 120.00013 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.57147 * 179.97438 * 10 9 3 27 27 H 1.07993 * 119.93816 * 180.31976 * 11 10 9 28 28 H 0.96996 * 119.99706 * 354.21215 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2213 0.0000 4 6 1.7007 2.5296 0.0005 5 6 2.6176 3.5075 -0.0002 6 6 2.3176 4.8935 0.0007 7 8 1.1617 5.2643 0.0026 8 16 4.2394 2.8385 -0.0008 9 6 3.6166 1.1914 -0.0006 10 6 4.2985 -0.0371 -0.0019 11 6 3.6181 -1.2101 0.0047 12 6 2.2056 -1.2103 0.0005 13 6 1.4992 -2.4336 0.0017 14 1 0.5051 -2.4829 0.4210 15 6 2.0872 -3.5812 -0.5403 16 7 3.0212 -3.4704 -1.4506 17 14 1.5397 -5.2719 0.0352 18 1 2.3116 -6.3147 -0.6873 19 1 1.7812 -5.4003 1.4948 20 1 0.0915 -5.4450 -0.2440 21 1 -0.3633 0.0003 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 0.6402 2.7340 0.0005 25 1 3.1175 5.6192 -0.0004 26 1 5.3785 -0.0473 -0.0027 27 1 4.1572 -2.1459 0.0088 28 1 3.2468 -2.5983 -1.8103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396380563.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:33 Heat of formation + Delta-G solvation = -27.513997 kcal Electronic energy + Delta-G solvation = -14727.579580 eV Core-core repulsion = 12219.500545 eV Total energy + Delta-G solvation = -2508.079034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78173 -39.91097 -37.01572 -34.76838 -33.54368 -30.80450 -28.35309 -26.87048 -26.05476 -23.42351 -21.89002 -20.96731 -19.45860 -18.46960 -17.28849 -16.96979 -16.22381 -15.79094 -15.61062 -15.35245 -15.25614 -14.74821 -14.21021 -13.82904 -13.59090 -13.46624 -13.17981 -12.90427 -12.60663 -12.00778 -11.88758 -11.83829 -11.68165 -11.23878 -11.06942 -10.87787 -10.18417 -9.41463 -9.28750 -8.52964 -6.43513 -0.76414 0.64426 0.69136 1.01101 1.07026 1.53078 1.59617 1.80758 1.94497 2.32337 2.56205 3.35547 3.39181 3.99178 4.16254 4.30673 4.40147 4.51229 4.62998 4.71113 4.88545 4.91973 5.08894 5.13956 5.40405 5.45527 5.52107 5.71116 5.76302 6.10972 6.18419 6.33375 6.66125 6.84280 8.00646 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.042004 B = 0.006328 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.447821 B = 4423.446748 C = 4978.990478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.195 4.195 3 C -0.067 4.067 4 C -0.040 4.040 5 C -0.293 4.293 6 C 0.420 3.580 7 O -0.499 6.499 8 S 0.130 5.870 9 C -0.233 4.233 10 C -0.077 4.077 11 C -0.164 4.164 12 C 0.066 3.934 13 C -0.537 4.537 14 H 0.081 0.919 15 C 0.006 3.994 16 N -0.815 5.815 17 Si 1.114 2.886 18 H -0.273 1.273 19 H -0.263 1.263 20 H -0.259 1.259 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.141 0.859 25 H 0.154 0.846 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 6.673 2.328 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.201 4.201 3 C -0.073 4.073 4 C -0.075 4.075 5 C -0.409 4.409 6 C 0.282 3.718 7 O -0.377 6.377 8 S 0.395 5.605 9 C -0.348 4.348 10 C -0.099 4.099 11 C -0.185 4.185 12 C 0.062 3.938 13 C -0.565 4.565 14 H 0.099 0.901 15 C -0.210 4.210 16 N -0.438 5.438 17 Si 0.931 3.069 18 H -0.198 1.198 19 H -0.188 1.188 20 H -0.183 1.183 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.159 0.841 25 H 0.170 0.830 26 H 0.143 0.857 27 H 0.125 0.875 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.027 5.994 2.106 7.037 hybrid contribution -1.468 0.702 0.015 1.627 sum 1.559 6.695 2.121 7.194 Atomic orbital electron populations 1.20340 0.91305 1.01165 1.00633 1.19989 0.95747 0.90533 1.13795 1.18130 0.92461 0.93352 1.03363 1.20619 1.00932 0.90751 0.95220 1.23877 0.98549 1.01210 1.17257 1.22534 0.92310 0.88162 0.68837 1.90550 1.26383 1.83042 1.37684 1.82953 1.03632 0.94688 1.79269 1.22683 0.96233 0.97702 1.18194 1.20003 0.98888 0.90053 1.00937 1.21070 0.94766 0.96917 1.05746 1.17677 0.92005 0.93238 0.90842 1.20707 1.04380 0.94427 1.36968 0.90073 1.28364 0.91994 1.08795 0.91879 1.70628 1.24601 1.30173 1.18403 0.83024 0.77430 0.69208 0.77224 1.19799 1.18815 1.18287 0.92728 0.92568 0.92540 0.84100 0.82971 0.85713 0.87541 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.17 9.18 71.24 0.65 -2.52 15 2 C -0.20 -9.17 6.01 -18.82 -0.11 -9.29 15 3 C -0.07 -2.92 5.82 -21.50 -0.13 -3.05 15 4 C -0.04 -1.52 9.17 21.86 0.20 -1.32 15 5 C -0.29 -9.37 6.13 22.20 0.14 -9.24 15 6 C 0.42 11.02 11.46 68.70 0.79 11.80 15 7 O -0.50 -16.52 17.41 -3.36 -0.06 -16.58 15 8 S 0.13 4.03 23.21 -56.49 -1.31 2.72 15 9 C -0.23 -9.63 6.52 23.37 0.15 -9.48 15 10 C -0.08 -3.28 9.98 22.21 0.22 -3.06 15 11 C -0.16 -7.88 7.85 22.40 0.18 -7.71 15 12 C 0.07 3.33 5.25 -21.43 -0.11 3.22 15 13 C -0.54 -26.93 7.99 23.41 0.19 -26.74 15 14 H 0.08 3.96 6.92 -2.91 -0.02 3.94 15 15 C 0.01 0.30 4.93 85.23 0.42 0.72 15 16 N -0.81 -41.58 12.34 21.82 0.27 -41.31 15 17 Si 1.11 40.68 30.00 68.60 2.06 42.73 15 18 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 19 H -0.26 -9.12 7.11 99.48 0.71 -8.42 15 20 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 21 H 0.05 2.08 8.14 -2.38 -0.02 2.06 15 22 H 0.06 2.06 7.15 -2.39 -0.02 2.04 15 23 H 0.06 2.36 6.74 -2.39 -0.02 2.35 15 24 H 0.14 5.13 7.20 -2.91 -0.02 5.10 15 25 H 0.15 2.41 8.06 -2.91 -0.02 2.39 15 26 H 0.12 4.60 8.06 -2.91 -0.02 4.58 15 27 H 0.11 5.26 6.55 -2.91 -0.02 5.24 15 28 H 0.28 15.04 6.70 -92.71 -0.62 14.42 15 Total: -1.00 -57.48 260.10 4.88 -52.60 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 1.34 Total: 16.49 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 2.58 Total: -56.65 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.27 Total: -41.31 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.06 Total: -16.58 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.06 Total: 42.73 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.31 Total: 2.72 kcal Total: -57.48 4.88 -52.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396380563.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.086 kcal (2) G-P(sol) polarization free energy of solvation -57.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds