Wall clock time and date at job start Mon Mar 30 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35762 * 119.95044 * 2 1 4 4 C 1.40463 * 120.83466 * 179.97438 * 3 2 1 5 5 S 1.75865 * 130.11291 * 180.02562 * 4 3 2 6 6 C 1.69968 * 93.19780 * 179.97438 * 5 4 3 7 7 C 1.35343 * 112.18665 * 0.02562 * 6 5 4 8 8 C 1.41577 * 123.18932 * 180.02562 * 7 6 5 9 9 O 1.21431 * 119.99411 * 180.02562 * 8 7 6 10 10 C 1.39854 * 119.97755 * 0.03160 * 4 3 2 11 11 C 1.39916 * 119.38876 * 359.71824 * 10 4 3 12 12 C 1.40122 * 119.95662 * 0.52853 * 11 10 4 13 13 C 1.41240 * 120.13318 * 179.74280 * 12 11 10 14 14 H 1.08007 * 119.99763 * 154.19423 * 13 12 11 15 15 C 1.39892 * 120.00074 * 334.19492 * 13 12 11 16 16 N 1.30867 * 120.00178 * 334.58741 * 15 13 12 17 17 Si 1.86798 * 120.00075 * 154.58214 * 15 13 12 18 18 H 1.48501 * 109.47407 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47229 * 300.00446 * 17 15 13 20 20 H 1.48502 * 109.47247 * 60.00230 * 17 15 13 21 21 H 1.09000 * 109.47107 * 270.01986 * 1 2 3 22 22 H 1.09003 * 109.46520 * 30.02051 * 1 2 3 23 23 H 1.08995 * 109.47029 * 150.01755 * 1 2 3 24 24 H 1.07998 * 119.58159 * 359.97438 * 3 2 1 25 25 H 1.07998 * 123.90162 * 179.97438 * 6 5 4 26 26 H 1.07997 * 120.00542 * 0.02562 * 8 7 6 27 27 H 1.08001 * 120.02162 * 180.27841 * 11 10 4 28 28 H 0.97002 * 120.00107 * 354.15822 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.1763 0.0000 4 6 3.5893 1.1980 0.0005 5 16 4.7014 2.5603 0.0013 6 6 6.0760 1.5605 0.0023 7 6 5.7521 0.2464 0.0016 8 6 6.7171 -0.7896 0.0028 9 8 6.3612 -1.9506 0.0016 10 6 4.3067 -0.0025 0.0004 11 6 3.6124 -1.2173 0.0058 12 6 2.2112 -1.2224 -0.0001 13 6 1.5066 -2.4465 -0.0002 14 1 0.5057 -2.4935 0.4030 15 6 2.1051 -3.5980 -0.5225 16 7 3.0459 -3.4941 -1.4261 17 14 1.5615 -5.2840 0.0702 18 1 2.3448 -6.3320 -0.6323 19 1 1.7913 -5.3923 1.5333 20 1 0.1166 -5.4682 -0.2189 21 1 -0.3633 0.0004 1.0277 22 1 -0.3632 0.8899 -0.5142 23 1 -0.3633 -0.8901 -0.5135 24 1 1.6372 2.1072 -0.0004 25 1 7.0904 1.9311 0.0026 26 1 7.7695 -0.5474 0.0047 27 1 4.1561 -2.1504 0.0103 28 1 3.2696 -2.6256 -1.7958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396381147.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:40 Heat of formation + Delta-G solvation = -13.312851 kcal Electronic energy + Delta-G solvation = -15064.984640 eV Core-core repulsion = 12557.521414 eV Total energy + Delta-G solvation = -2507.463226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.11425 -37.70094 -35.09860 -33.60127 -30.52965 -29.37700 -26.15922 -25.37055 -24.54179 -21.23249 -20.79363 -19.13886 -17.38486 -16.87719 -15.86661 -14.88719 -14.38801 -14.10493 -13.83802 -13.56545 -13.43059 -12.91227 -12.36347 -12.24767 -11.94425 -11.65262 -11.56953 -11.15789 -11.05110 -10.51729 -10.40905 -9.96434 -9.93036 -9.45425 -9.04529 -8.96928 -8.48524 -7.53901 -7.20940 -6.93084 -4.47846 1.05356 2.26060 2.44850 2.68591 2.76480 3.14753 3.21918 3.37078 3.70792 4.01346 4.48678 4.90893 5.19923 5.33910 5.84538 5.98650 6.06854 6.14753 6.25862 6.41127 6.45929 6.65036 6.90039 6.95632 7.30923 7.38424 7.53684 7.68519 7.75083 8.04701 8.16024 8.17898 8.60910 8.80697 10.01431 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.009348 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.283968 B = 2994.638712 C = 4056.875541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.155 4.155 3 C -0.053 4.053 4 C -0.272 4.272 5 S 0.112 5.888 6 C -0.174 4.174 7 C -0.202 4.202 8 C 0.384 3.616 9 O -0.451 6.451 10 C -0.006 4.006 11 C -0.204 4.204 12 C 0.097 3.903 13 C -0.503 4.503 14 H 0.082 0.918 15 C 0.035 3.965 16 N -0.774 5.774 17 Si 1.065 2.935 18 H -0.273 1.273 19 H -0.274 1.274 20 H -0.276 1.276 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.161 0.839 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 6.784 1.719 7.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.158 4.158 3 C -0.074 4.074 4 C -0.386 4.386 5 S 0.378 5.622 6 C -0.311 4.311 7 C -0.220 4.220 8 C 0.241 3.759 9 O -0.326 6.326 10 C -0.010 4.010 11 C -0.226 4.226 12 C 0.093 3.907 13 C -0.530 4.530 14 H 0.100 0.900 15 C -0.190 4.190 16 N -0.395 5.395 17 Si 0.888 3.112 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.201 1.201 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.114 0.886 25 H 0.179 0.821 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.318 6.152 1.511 6.745 hybrid contribution 0.162 0.519 0.140 0.562 sum 2.481 6.671 1.651 7.306 Atomic orbital electron populations 1.20491 0.92640 1.01161 1.00352 1.19494 0.94819 0.92703 1.08812 1.19511 0.90264 0.96640 1.01034 1.21864 0.96926 0.94103 1.25737 1.82098 0.94624 1.09698 1.75758 1.25204 1.03958 0.97737 1.04249 1.20034 0.95640 0.94472 1.11864 1.22095 0.93283 0.87858 0.72638 1.90597 1.84787 1.22721 1.34535 1.18585 0.89083 0.93671 0.99664 1.21163 0.93391 0.95715 1.12329 1.17465 0.91461 0.92246 0.89542 1.20587 1.03115 0.93635 1.35711 0.89975 1.27085 0.92949 1.05589 0.93336 1.70441 1.21126 1.32016 1.15952 0.83633 0.76682 0.73520 0.77331 1.19712 1.19897 1.20102 0.93271 0.93853 0.91463 0.88606 0.82135 0.89974 0.85191 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.38 36.01 0.34 -1.42 15 2 C -0.16 -3.65 5.89 -104.44 -0.62 -4.26 15 3 C -0.05 -1.16 9.61 -39.63 -0.38 -1.54 15 4 C -0.27 -6.05 6.48 -38.14 -0.25 -6.30 15 5 S 0.11 1.91 22.97 -107.50 -2.47 -0.56 15 6 C -0.17 -2.85 10.62 29.70 0.32 -2.53 15 7 C -0.20 -4.07 5.82 -106.25 -0.62 -4.69 15 8 C 0.38 7.25 11.28 32.00 0.36 7.61 15 9 O -0.45 -10.67 15.55 5.43 0.08 -10.58 15 10 C -0.01 -0.13 6.00 -105.26 -0.63 -0.77 15 11 C -0.20 -5.47 7.46 -38.25 -0.29 -5.76 15 12 C 0.10 2.54 5.28 -106.98 -0.57 1.98 15 13 C -0.50 -13.04 8.04 -37.82 -0.30 -13.35 15 14 H 0.08 2.01 6.91 -52.48 -0.36 1.65 15 15 C 0.03 0.89 4.92 -17.34 -0.09 0.80 15 16 N -0.77 -21.14 12.32 55.54 0.68 -20.46 15 17 Si 1.07 21.79 30.00 -169.99 -5.10 16.69 15 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 20 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.04 0.74 8.08 -51.93 -0.42 0.32 15 23 H 0.07 1.36 6.75 -51.93 -0.35 1.01 15 24 H 0.10 1.84 8.06 -52.49 -0.42 1.42 15 25 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.08 1.11 8.06 -52.49 -0.42 0.69 15 27 H 0.13 3.75 4.81 -52.49 -0.25 3.50 15 28 H 0.30 8.57 6.70 -40.82 -0.27 8.30 15 LS Contribution 258.52 15.07 3.90 3.90 Total: -1.00 -29.75 258.52 -7.77 -37.52 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.15 Total: 3.74 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -2.72 Total: -30.24 kcal Atomic # 7 Polarization: -21.14 SS G_CDS: 0.68 Total: -20.46 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.10 Total: 16.69 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.47 Total: -0.56 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.75 -7.77 -37.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396381147.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.205 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds