Wall clock time and date at job start Mon Mar 30 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37495 * 119.75897 * 2 1 4 4 C 1.38690 * 120.14372 * 179.97438 * 3 2 1 5 5 C 1.37349 * 120.27468 * 359.97438 * 4 3 2 6 6 C 1.40830 * 120.46545 * 0.02562 * 5 4 3 7 7 C 1.46467 * 128.61130 * 179.97438 * 6 5 4 8 8 C 1.39510 * 123.35966 * 0.03465 * 7 6 5 9 9 H 1.08006 * 119.99634 * 218.25019 * 8 7 6 10 10 C 1.40722 * 120.00325 * 38.25689 * 8 7 6 11 11 N 1.30428 * 119.99603 * 22.72530 * 10 8 7 12 12 Si 1.86795 * 120.00297 * 202.45231 * 10 8 7 13 13 H 1.48502 * 109.47192 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47435 * 119.99815 * 12 10 8 15 15 H 1.48504 * 109.47285 * 239.99956 * 12 10 8 16 16 C 1.38910 * 113.27183 * 180.30486 * 7 6 5 17 17 C 1.41094 * 124.64399 * 179.72938 * 16 7 6 18 18 O 1.21500 * 119.99700 * 5.29852 * 17 16 7 19 19 S 1.75164 * 110.71253 * 359.59457 * 16 7 6 20 20 C 1.39418 * 119.06236 * 359.97438 * 6 5 4 21 21 H 1.08999 * 109.47096 * 90.00243 * 1 2 3 22 22 H 1.08998 * 109.47199 * 209.99948 * 1 2 3 23 23 H 1.08996 * 109.47407 * 330.00076 * 1 2 3 24 24 H 1.07998 * 119.93098 * 359.97428 * 3 2 1 25 25 H 1.08004 * 119.86130 * 180.02562 * 4 3 2 26 26 H 1.08003 * 119.76847 * 180.02562 * 5 4 3 27 27 H 0.96995 * 120.00080 * 5.30288 * 11 10 8 28 28 H 1.08000 * 120.00112 * 185.30214 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1936 0.0000 4 6 3.5763 1.2029 0.0005 5 6 4.2767 0.0215 0.0016 6 6 3.5966 -1.2118 0.0016 7 6 4.1574 -2.5648 0.0021 8 6 5.5276 -2.8273 0.0034 9 1 5.9202 -3.6504 -0.5753 10 6 6.3981 -2.0199 0.7588 11 7 5.9408 -1.3396 1.7733 12 14 8.2098 -1.9284 0.3134 13 1 8.4741 -2.7927 -0.8649 14 1 8.5696 -0.5247 -0.0112 15 1 9.0263 -2.3957 1.4624 16 6 3.1888 -3.5604 -0.0048 17 6 3.4614 -4.9448 -0.0113 18 8 4.6066 -5.3388 0.0860 19 16 1.5824 -2.8619 -0.0005 20 6 2.2024 -1.2163 0.0011 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6444 2.1260 -0.0004 25 1 4.1077 2.1432 0.0010 26 1 5.3566 0.0382 0.0024 27 1 5.0190 -1.4489 2.0546 28 1 2.6522 -5.6541 -0.1029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396381310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:03 Heat of formation + Delta-G solvation = -36.419029 kcal Electronic energy + Delta-G solvation = -15179.180890 eV Core-core repulsion = 12670.715705 eV Total energy + Delta-G solvation = -2508.465185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60756 -39.26715 -37.04242 -34.44410 -33.32464 -30.70623 -28.67885 -27.61418 -25.15603 -23.63632 -22.03464 -20.96781 -18.90318 -18.55920 -17.11759 -16.46362 -16.16160 -15.86241 -15.65024 -15.08383 -14.86044 -14.61033 -14.41066 -13.94873 -13.80505 -13.23384 -13.03296 -12.88353 -12.56015 -12.31213 -12.08255 -11.73226 -11.61136 -11.34822 -10.97417 -10.29165 -10.09724 -9.70659 -9.25719 -8.54204 -6.75023 -0.28801 0.36419 1.00632 1.05131 1.41211 1.57804 1.64713 1.75681 2.15011 2.25093 2.63866 3.04060 3.76652 3.94944 4.02203 4.20408 4.42079 4.48698 4.71042 4.79930 4.80288 4.96531 5.10154 5.25073 5.29581 5.39270 5.50379 5.56749 5.66284 5.84979 6.07271 6.30043 6.42524 7.21039 7.59342 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.011547 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.976738 B = 2424.259536 C = 3608.158301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.083 4.083 3 C -0.097 4.097 4 C -0.132 4.132 5 C -0.089 4.089 6 C -0.109 4.109 7 C 0.098 3.902 8 C -0.428 4.428 9 H 0.081 0.919 10 C 0.003 3.997 11 N -0.748 5.748 12 Si 1.119 2.881 13 H -0.270 1.270 14 H -0.242 1.242 15 H -0.261 1.261 16 C -0.496 4.496 17 C 0.378 3.622 18 O -0.564 6.564 19 S 0.031 5.969 20 C -0.123 4.123 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.167 0.833 25 H 0.153 0.847 26 H 0.114 0.886 27 H 0.287 0.713 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 8.792 -2.190 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.153 4.153 5 C -0.109 4.109 6 C -0.117 4.117 7 C 0.089 3.911 8 C -0.456 4.456 9 H 0.099 0.901 10 C -0.220 4.220 11 N -0.367 5.367 12 Si 0.933 3.067 13 H -0.195 1.195 14 H -0.165 1.165 15 H -0.186 1.186 16 C -0.611 4.611 17 C 0.254 3.746 18 O -0.454 6.454 19 S 0.289 5.711 20 C -0.238 4.238 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.115 0.885 24 H 0.185 0.815 25 H 0.171 0.829 26 H 0.132 0.868 27 H 0.099 0.901 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.729 8.609 -1.684 9.965 hybrid contribution -0.211 -0.856 -0.316 0.936 sum -4.940 7.753 -2.000 9.408 Atomic orbital electron populations 1.20802 0.88621 1.03556 1.03286 1.19811 0.97455 0.90030 1.01602 1.21264 0.93846 0.97618 0.98920 1.21250 0.94968 0.97532 1.01547 1.21309 1.00030 0.91180 0.98382 1.19764 0.93021 0.94139 1.04767 1.18226 0.93994 0.89467 0.89418 1.20916 0.92052 1.11771 1.20838 0.90075 1.28934 1.12015 0.89131 0.91918 1.70368 1.19703 1.29104 1.17565 0.83006 0.66420 0.79581 0.77681 1.19471 1.16544 1.18586 1.22995 0.95477 0.99137 1.43481 1.21002 0.90672 0.88843 0.74133 1.90413 1.26673 1.82251 1.46029 1.82302 1.07655 0.95147 1.86031 1.22862 0.96219 0.98259 1.06441 0.89967 0.92528 0.88533 0.81509 0.82944 0.86766 0.90077 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.85 71.23 0.70 -1.96 15 2 C -0.08 -2.80 5.91 -19.59 -0.12 -2.92 15 3 C -0.10 -2.83 9.66 22.20 0.21 -2.62 15 4 C -0.13 -4.37 10.01 22.17 0.22 -4.15 15 5 C -0.09 -3.82 8.35 22.69 0.19 -3.63 15 6 C -0.11 -5.27 5.05 -20.22 -0.10 -5.37 15 7 C 0.10 5.37 5.01 -20.67 -0.10 5.26 15 8 C -0.43 -23.60 7.76 23.18 0.18 -23.42 15 9 H 0.08 4.79 6.76 -2.91 -0.02 4.78 15 10 C 0.00 0.13 3.91 85.51 0.33 0.46 15 11 N -0.75 -37.34 11.66 21.96 0.26 -37.08 15 12 Si 1.12 41.23 30.00 68.60 2.06 43.29 15 13 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 14 H -0.24 -7.87 7.11 99.48 0.71 -7.16 15 15 H -0.26 -9.23 7.11 99.48 0.71 -8.53 15 16 C -0.50 -26.17 6.24 23.13 0.14 -26.03 15 17 C 0.38 19.72 11.41 68.52 0.78 20.51 15 18 O -0.56 -33.12 15.28 -3.72 -0.06 -33.18 15 19 S 0.03 1.34 22.31 -56.49 -1.26 0.08 15 20 C -0.12 -5.32 6.27 23.01 0.14 -5.17 15 21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.06 1.51 7.53 -2.39 -0.02 1.50 15 23 H 0.10 1.80 8.08 -2.39 -0.02 1.78 15 24 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 25 H 0.15 3.91 8.06 -2.91 -0.02 3.89 15 26 H 0.11 5.07 6.03 -2.91 -0.02 5.05 15 27 H 0.29 15.38 6.90 -92.71 -0.64 14.74 15 28 H 0.08 3.57 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -65.35 257.62 4.90 -60.44 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.32 Total: 15.47 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 2.59 Total: -49.03 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.26 Total: -37.08 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.06 Total: -33.18 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.06 Total: 43.29 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -1.26 Total: 0.08 kcal Total: -65.35 4.90 -60.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396381310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.026 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds