Wall clock time and date at job start Mon Mar 30 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39104 * 119.99547 * 2 1 4 4 S 1.75820 * 130.15635 * 0.02562 * 3 2 1 5 5 C 1.69992 * 93.12646 * 179.97438 * 4 3 2 6 6 C 1.35860 * 112.06426 * 359.97438 * 5 4 3 7 7 C 1.41772 * 123.16395 * 179.97438 * 6 5 4 8 8 O 1.21396 * 120.00182 * 180.02562 * 7 6 5 9 9 C 1.39867 * 119.80296 * 179.97438 * 3 2 1 10 10 C 1.41323 * 119.56194 * 0.02840 * 9 3 2 11 11 C 1.35493 * 120.78184 * 359.63599 * 10 9 3 12 12 C 1.40281 * 119.99607 * 179.97438 * 2 1 3 13 13 C 1.41111 * 120.17123 * 0.02562 * 12 2 1 14 14 H 1.07999 * 119.99527 * 333.91082 * 13 12 2 15 15 C 1.39900 * 120.00183 * 153.91281 * 13 12 2 16 16 N 1.30874 * 119.99761 * 343.43424 * 15 13 12 17 17 Si 1.86800 * 120.00176 * 163.43934 * 15 13 12 18 18 H 1.48499 * 109.47036 * 265.61945 * 17 15 13 19 19 H 1.48502 * 109.46880 * 25.61826 * 17 15 13 20 20 H 1.48496 * 109.47430 * 145.61470 * 17 15 13 21 21 H 1.08996 * 109.47341 * 270.01991 * 1 2 3 22 22 H 1.09000 * 109.47128 * 30.02061 * 1 2 3 23 23 H 1.09003 * 109.46845 * 150.01710 * 1 2 3 24 24 H 1.08002 * 123.96538 * 180.02562 * 5 4 3 25 25 H 1.08000 * 120.00043 * 0.02562 * 7 6 5 26 26 H 1.07997 * 119.60914 * 180.02562 * 10 9 3 27 27 H 1.07995 * 119.91221 * 180.32715 * 11 10 9 28 28 H 0.97002 * 119.99241 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2047 0.0000 4 16 1.6055 2.8585 0.0006 5 6 3.1706 3.5220 0.0009 6 6 4.1319 2.5620 0.0011 7 6 5.5193 2.8537 0.0009 8 8 6.3297 1.9498 0.0006 9 6 3.6011 1.2000 0.0005 10 6 4.2942 -0.0316 0.0005 11 6 3.6199 -1.2067 0.0073 12 6 2.2084 -1.2149 0.0005 13 6 1.5064 -2.4390 0.0005 14 1 0.5089 -2.4894 0.4115 15 6 2.1025 -3.5873 -0.5317 16 7 3.1495 -3.4803 -1.3096 17 14 1.4040 -5.2731 -0.1323 18 1 2.1311 -5.8479 1.0280 19 1 -0.0375 -5.1453 0.2008 20 1 1.5631 -6.1662 -1.3079 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5136 24 1 3.3765 4.5822 0.0017 25 1 5.8553 3.8801 0.0009 26 1 5.3742 -0.0361 0.0013 27 1 4.1638 -2.1397 0.0125 28 1 3.5630 -4.2766 -1.6784 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396382977.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:28 Heat of formation + Delta-G solvation = -10.713730 kcal Electronic energy + Delta-G solvation = -14884.657953 eV Core-core repulsion = 12377.307433 eV Total energy + Delta-G solvation = -2507.350520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.09201 -37.65560 -34.96679 -33.15570 -31.33169 -29.17641 -26.51858 -25.18021 -24.43350 -21.59783 -20.43834 -18.76273 -17.63117 -16.44310 -15.65123 -15.36997 -14.75045 -13.89783 -13.88151 -13.63613 -13.42119 -12.87921 -12.38511 -12.09023 -11.66301 -11.56594 -11.36547 -11.29828 -11.19694 -10.72315 -10.69328 -9.99251 -9.94818 -9.47477 -9.28028 -9.02500 -8.38238 -7.44297 -7.07468 -6.72521 -4.52730 1.13622 2.37309 2.45258 2.74984 2.81889 2.95803 2.99907 3.00412 3.69467 3.76928 4.45602 4.89426 5.39192 5.41480 6.02351 6.07766 6.19050 6.35643 6.38454 6.56675 6.70075 6.77260 6.85032 6.92825 7.12790 7.34625 7.58960 7.74605 7.82904 7.98243 8.03402 8.36256 8.62603 8.70194 9.92992 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.007650 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.469678 B = 3659.267532 C = 4512.520318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.193 4.193 3 C -0.091 4.091 4 S 0.104 5.896 5 C -0.233 4.233 6 C -0.165 4.165 7 C 0.394 3.606 8 O -0.468 6.468 9 C -0.158 4.158 10 C -0.074 4.074 11 C -0.132 4.132 12 C 0.130 3.870 13 C -0.438 4.438 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.778 5.778 17 Si 0.914 3.086 18 H -0.266 1.266 19 H -0.259 1.259 20 H -0.275 1.275 21 H 0.043 0.957 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.156 0.844 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 6.353 1.550 6.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C -0.206 4.206 4 S 0.371 5.629 5 C -0.370 4.370 6 C -0.181 4.181 7 C 0.252 3.748 8 O -0.344 6.344 9 C -0.163 4.163 10 C -0.094 4.094 11 C -0.151 4.151 12 C 0.124 3.876 13 C -0.467 4.467 14 H 0.106 0.894 15 C -0.148 4.148 16 N -0.402 5.402 17 Si 0.738 3.262 18 H -0.190 1.190 19 H -0.183 1.183 20 H -0.200 1.200 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.174 0.826 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.142 0.858 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.750 6.455 1.389 7.153 hybrid contribution 1.179 -1.107 0.016 1.617 sum -1.570 5.349 1.405 5.749 Atomic orbital electron populations 1.20371 0.92920 1.00755 0.99861 1.18985 0.94105 0.89987 1.17009 1.22127 0.95957 0.95174 1.07325 1.82314 1.05623 0.98644 1.76296 1.24987 0.98476 1.02443 1.11047 1.19881 0.96052 0.93298 1.08861 1.22210 0.87497 0.93669 0.71388 1.90490 1.57172 1.51039 1.35665 1.18417 0.91190 0.91582 1.15081 1.20503 0.98810 0.90612 0.99489 1.21102 0.94631 0.96884 1.02528 1.17396 0.91685 0.91307 0.87180 1.19691 1.02102 0.92074 1.32788 0.89413 1.26058 0.94173 1.01963 0.92576 1.69836 1.17487 1.32479 1.20416 0.86181 0.80608 0.80283 0.79108 1.19049 1.18259 1.20030 0.93801 0.94383 0.91620 0.82611 0.89880 0.87100 0.85753 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 9.25 36.01 0.33 -1.34 15 2 C -0.19 -4.59 5.97 -103.53 -0.62 -5.21 15 3 C -0.09 -2.09 6.26 -38.65 -0.24 -2.33 15 4 S 0.10 1.87 22.23 -107.50 -2.39 -0.52 15 5 C -0.23 -3.89 10.65 29.88 0.32 -3.58 15 6 C -0.16 -3.23 5.83 -106.22 -0.62 -3.84 15 7 C 0.39 6.86 11.29 32.08 0.36 7.23 15 8 O -0.47 -9.83 15.51 5.46 0.08 -9.74 15 9 C -0.16 -3.73 6.03 -104.93 -0.63 -4.36 15 10 C -0.07 -1.83 9.46 -39.39 -0.37 -2.20 15 11 C -0.13 -3.40 8.58 -39.46 -0.34 -3.74 15 12 C 0.13 3.33 5.55 -106.93 -0.59 2.74 15 13 C -0.44 -10.78 8.09 -37.87 -0.31 -11.09 15 14 H 0.09 2.05 6.86 -52.49 -0.36 1.69 15 15 C 0.07 1.70 5.15 -17.34 -0.09 1.62 15 16 N -0.78 -19.07 11.00 55.55 0.61 -18.46 15 17 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 15 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 19 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 20 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 21 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.04 0.70 7.57 -51.93 -0.39 0.31 15 23 H 0.06 1.34 6.75 -51.93 -0.35 0.98 15 24 H 0.16 1.95 8.06 -52.49 -0.42 1.52 15 25 H 0.09 1.04 8.06 -52.49 -0.42 0.61 15 26 H 0.11 2.70 6.34 -52.49 -0.33 2.37 15 27 H 0.12 3.24 6.24 -52.49 -0.33 2.91 15 28 H 0.29 6.35 8.30 -40.82 -0.34 6.01 15 LS Contribution 258.08 15.07 3.89 3.89 Total: -1.00 -27.78 258.08 -7.80 -35.58 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.17 Total: 2.93 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.80 Total: -26.12 kcal Atomic # 7 Polarization: -19.07 SS G_CDS: 0.61 Total: -18.46 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.39 Total: -0.52 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.78 -7.80 -35.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382977.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.867 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds