Wall clock time and date at job start Mon Mar 30 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39104 * 119.99547 * 2 1 4 4 S 1.75820 * 130.15635 * 0.02562 * 3 2 1 5 5 C 1.69992 * 93.12646 * 179.97438 * 4 3 2 6 6 C 1.35860 * 112.06426 * 359.97438 * 5 4 3 7 7 C 1.41772 * 123.16395 * 179.97438 * 6 5 4 8 8 O 1.21396 * 120.00182 * 180.02562 * 7 6 5 9 9 C 1.39867 * 119.80296 * 179.97438 * 3 2 1 10 10 C 1.41323 * 119.56194 * 0.02840 * 9 3 2 11 11 C 1.35493 * 120.78184 * 359.63599 * 10 9 3 12 12 C 1.40281 * 119.99607 * 179.97438 * 2 1 3 13 13 C 1.41111 * 120.17123 * 0.02562 * 12 2 1 14 14 H 1.07999 * 119.99527 * 333.91082 * 13 12 2 15 15 C 1.39900 * 120.00183 * 153.91281 * 13 12 2 16 16 N 1.30874 * 119.99761 * 343.43424 * 15 13 12 17 17 Si 1.86800 * 120.00176 * 163.43934 * 15 13 12 18 18 H 1.48499 * 109.47036 * 265.61945 * 17 15 13 19 19 H 1.48502 * 109.46880 * 25.61826 * 17 15 13 20 20 H 1.48496 * 109.47430 * 145.61470 * 17 15 13 21 21 H 1.08996 * 109.47341 * 270.01991 * 1 2 3 22 22 H 1.09000 * 109.47128 * 30.02061 * 1 2 3 23 23 H 1.09003 * 109.46845 * 150.01710 * 1 2 3 24 24 H 1.08002 * 123.96538 * 180.02562 * 5 4 3 25 25 H 1.08000 * 120.00043 * 0.02562 * 7 6 5 26 26 H 1.07997 * 119.60914 * 180.02562 * 10 9 3 27 27 H 1.07995 * 119.91221 * 180.32715 * 11 10 9 28 28 H 0.97002 * 119.99241 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.2047 0.0000 4 16 1.6055 2.8585 0.0006 5 6 3.1706 3.5220 0.0009 6 6 4.1319 2.5620 0.0011 7 6 5.5193 2.8537 0.0009 8 8 6.3297 1.9498 0.0006 9 6 3.6011 1.2000 0.0005 10 6 4.2942 -0.0316 0.0005 11 6 3.6199 -1.2067 0.0073 12 6 2.2084 -1.2149 0.0005 13 6 1.5064 -2.4390 0.0005 14 1 0.5089 -2.4894 0.4115 15 6 2.1025 -3.5873 -0.5317 16 7 3.1495 -3.4803 -1.3096 17 14 1.4040 -5.2731 -0.1323 18 1 2.1311 -5.8479 1.0280 19 1 -0.0375 -5.1453 0.2008 20 1 1.5631 -6.1662 -1.3079 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5136 24 1 3.3765 4.5822 0.0017 25 1 5.8553 3.8801 0.0009 26 1 5.3742 -0.0361 0.0013 27 1 4.1638 -2.1397 0.0125 28 1 3.5630 -4.2766 -1.6784 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396382977.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:27 Heat of formation + Delta-G solvation = -25.962568 kcal Electronic energy + Delta-G solvation = -14885.319192 eV Core-core repulsion = 12377.307433 eV Total energy + Delta-G solvation = -2508.011759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63852 -39.28599 -36.60932 -34.84586 -33.11040 -30.90248 -28.21162 -26.83711 -25.97338 -23.30593 -22.17914 -20.28662 -19.39455 -17.99083 -17.24211 -16.95432 -16.34897 -15.57090 -15.40866 -15.24683 -15.05607 -14.52961 -14.03375 -13.74250 -13.24998 -13.17030 -13.03105 -12.99726 -12.77248 -12.33608 -12.25882 -11.68168 -11.63230 -11.17076 -11.01948 -10.50305 -10.03751 -9.20933 -8.79168 -8.37677 -6.35648 -0.27961 0.74187 0.82525 0.94189 1.24709 1.37776 1.45634 1.52386 2.15400 2.20269 2.71836 3.56843 3.68511 4.05323 4.36223 4.55124 4.64227 4.73587 4.82828 4.96173 5.01622 5.02756 5.11327 5.20490 5.36570 5.58935 5.81976 5.95217 5.99276 6.16037 6.52679 6.71108 6.82331 6.88857 8.23557 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029892 B = 0.007650 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.469678 B = 3659.267532 C = 4512.520318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.206 4.206 3 C -0.132 4.132 4 S 0.172 5.828 5 C -0.181 4.181 6 C -0.208 4.208 7 C 0.398 3.602 8 O -0.517 6.517 9 C -0.176 4.176 10 C -0.092 4.092 11 C -0.154 4.154 12 C 0.095 3.905 13 C -0.470 4.470 14 H 0.092 0.908 15 C 0.033 3.967 16 N -0.821 5.821 17 Si 0.987 3.013 18 H -0.264 1.264 19 H -0.251 1.251 20 H -0.269 1.269 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.217 0.783 25 H 0.155 0.845 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 9.547 1.853 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.213 4.213 3 C -0.247 4.247 4 S 0.439 5.561 5 C -0.318 4.318 6 C -0.224 4.224 7 C 0.260 3.740 8 O -0.396 6.396 9 C -0.181 4.181 10 C -0.112 4.112 11 C -0.174 4.174 12 C 0.090 3.910 13 C -0.499 4.499 14 H 0.110 0.890 15 C -0.183 4.183 16 N -0.446 5.446 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.174 1.174 20 H -0.194 1.194 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.234 0.766 25 H 0.171 0.829 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.053 9.662 1.694 10.614 hybrid contribution 1.562 -1.698 -0.066 2.308 sum -2.492 7.964 1.628 8.502 Atomic orbital electron populations 1.20347 0.90732 1.01329 1.00828 1.19427 0.95896 0.90116 1.15907 1.22569 0.96314 0.98186 1.07588 1.82116 1.05298 0.93891 1.74790 1.25796 0.97136 1.04849 1.03998 1.20136 0.98321 0.91779 1.12185 1.23034 0.86030 0.95777 0.69146 1.90495 1.57932 1.53053 1.38170 1.18923 0.92051 0.93053 1.14059 1.20560 0.98489 0.91676 1.00524 1.21046 0.95330 0.96577 1.04406 1.17728 0.91742 0.92906 0.88661 1.19871 1.02642 0.92833 1.34581 0.89021 1.26916 0.94236 1.05443 0.91731 1.69907 1.19186 1.33644 1.21892 0.85110 0.80028 0.75347 0.78824 1.18877 1.17401 1.19355 0.92466 0.92429 0.92322 0.76592 0.82922 0.88052 0.87662 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.03 9.25 71.24 0.66 -2.37 15 2 C -0.21 -9.99 5.97 -19.16 -0.11 -10.10 15 3 C -0.13 -5.94 6.26 22.87 0.14 -5.80 15 4 S 0.17 5.41 22.23 -56.49 -1.26 4.16 15 5 C -0.18 -4.96 10.65 67.27 0.72 -4.25 15 6 C -0.21 -7.53 5.83 -20.90 -0.12 -7.65 15 7 C 0.40 12.66 11.29 68.69 0.78 13.44 15 8 O -0.52 -21.66 15.51 -3.39 -0.05 -21.71 15 9 C -0.18 -8.30 6.03 -20.06 -0.12 -8.43 15 10 C -0.09 -4.86 9.46 22.39 0.21 -4.64 15 11 C -0.15 -8.56 8.58 22.35 0.19 -8.37 15 12 C 0.09 5.13 5.55 -21.36 -0.12 5.01 15 13 C -0.47 -24.39 8.09 23.38 0.19 -24.20 15 14 H 0.09 4.46 6.86 -2.91 -0.02 4.44 15 15 C 0.03 1.61 5.15 85.24 0.44 2.05 15 16 N -0.82 -42.89 11.00 21.82 0.24 -42.65 15 17 Si 0.99 37.04 29.59 68.60 2.03 39.07 15 18 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 19 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 20 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 21 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.06 2.02 7.57 -2.39 -0.02 2.00 15 23 H 0.06 2.40 6.75 -2.39 -0.02 2.39 15 24 H 0.22 3.37 8.06 -2.91 -0.02 3.35 15 25 H 0.15 2.80 8.06 -2.91 -0.02 2.77 15 26 H 0.10 5.35 6.34 -2.91 -0.02 5.33 15 27 H 0.11 6.05 6.24 -2.91 -0.02 6.03 15 28 H 0.29 13.74 8.30 -92.71 -0.77 12.97 15 Total: -1.00 -66.33 258.08 5.01 -61.32 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.19 Total: 15.11 kcal Atomic # 6 Polarization: -58.15 SS G_CDS: 2.85 Total: -55.30 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.24 Total: -42.65 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.26 Total: 4.16 kcal Total: -66.33 5.01 -61.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396382977.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.362 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds