Wall clock time and date at job start Mon Mar 30 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35634 * 119.93861 * 2 1 4 4 C 1.40477 * 120.85334 * 179.97438 * 3 2 1 5 5 S 1.76080 * 130.26194 * 180.02562 * 4 3 2 6 6 C 1.75445 * 91.70838 * 179.97438 * 5 4 3 7 7 C 1.41802 * 124.62972 * 180.02562 * 6 5 4 8 8 O 1.21380 * 120.00242 * 180.02562 * 7 6 5 9 9 C 1.34049 * 110.74034 * 359.97438 * 6 5 4 10 10 C 1.40471 * 115.49967 * 0.02562 * 9 6 5 11 11 C 1.40997 * 128.65391 * 180.32506 * 10 9 6 12 12 C 1.39773 * 120.00289 * 180.19606 * 11 10 9 13 13 C 1.41271 * 120.00506 * 179.72271 * 12 11 10 14 14 H 1.07995 * 119.99829 * 209.67509 * 13 12 11 15 15 C 1.39859 * 119.99921 * 29.67948 * 13 12 11 16 16 N 1.30887 * 120.00076 * 197.12012 * 15 13 12 17 17 Si 1.86805 * 120.00366 * 17.12293 * 15 13 12 18 18 H 1.48503 * 109.46800 * 269.99923 * 17 15 13 19 19 H 1.48501 * 109.47044 * 29.99475 * 17 15 13 20 20 H 1.48491 * 109.47385 * 149.99781 * 17 15 13 21 21 H 1.09006 * 109.47150 * 270.02342 * 1 2 3 22 22 H 1.09000 * 109.47383 * 30.01812 * 1 2 3 23 23 H 1.09002 * 109.47300 * 150.02115 * 1 2 3 24 24 H 1.07998 * 119.57473 * 359.96163 * 3 2 1 25 25 H 1.07998 * 119.99907 * 359.97438 * 7 6 5 26 26 H 1.08002 * 122.24860 * 179.97438 * 9 6 5 27 27 H 1.07998 * 120.00177 * 359.92317 * 11 10 9 28 28 H 0.97006 * 119.99955 * 355.42142 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1838 1.1754 0.0000 4 6 3.5884 1.1978 0.0005 5 16 4.7048 2.5594 0.0013 6 6 6.0941 1.4880 0.0023 7 6 7.4448 1.9199 0.0038 8 8 8.3430 1.1035 0.0040 9 6 5.7045 0.2054 0.0027 10 6 4.3156 -0.0047 0.0016 11 6 3.6094 -1.2251 0.0079 12 6 2.2117 -1.2239 0.0013 13 6 1.5042 -2.4467 0.0017 14 1 0.5326 -2.5085 -0.4657 15 6 2.0620 -3.5771 0.6075 16 7 1.5915 -4.7669 0.3314 17 14 3.4785 -3.3891 1.8107 18 1 4.7660 -3.4550 1.0736 19 1 3.3703 -2.0792 2.5018 20 1 3.4253 -4.4835 2.8129 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6359 2.1060 -0.0006 25 1 7.6742 2.9752 0.0039 26 1 6.4109 -0.6115 0.0029 27 1 4.1485 -2.1609 0.0133 28 1 0.8140 -4.8602 -0.2411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396383474.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:42 Heat of formation + Delta-G solvation = -10.625484 kcal Electronic energy + Delta-G solvation = -14763.431743 eV Core-core repulsion = 12256.085050 eV Total energy + Delta-G solvation = -2507.346693 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31226 -38.45426 -35.37329 -33.63254 -30.83537 -30.43348 -27.11615 -25.41090 -23.68024 -22.02984 -20.53264 -19.26732 -18.01851 -17.46518 -15.60266 -15.46774 -14.57428 -14.42131 -14.23212 -14.09038 -13.61071 -13.20261 -12.68218 -12.48700 -12.22324 -12.10411 -11.48972 -11.11239 -10.96253 -10.67719 -10.46288 -9.99297 -9.89054 -9.76552 -9.55665 -9.20176 -8.71904 -7.78017 -7.44126 -7.06899 -4.71009 0.65969 2.08878 2.27002 2.42769 2.55630 3.11115 3.20108 3.36104 3.45569 3.90705 4.27260 4.54805 5.07137 5.46644 5.49422 5.70306 5.86955 5.93384 6.07829 6.27175 6.30226 6.39959 6.53661 6.66246 6.94926 7.07099 7.12858 7.36091 7.50273 7.55336 7.58278 8.13229 8.25508 8.54013 9.86567 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.008734 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.263938 B = 3205.241722 C = 4171.273281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.111 4.111 3 C -0.071 4.071 4 C -0.198 4.198 5 S 0.058 5.942 6 C -0.300 4.300 7 C 0.411 3.589 8 O -0.472 6.472 9 C -0.014 4.014 10 C -0.056 4.056 11 C -0.219 4.219 12 C 0.093 3.907 13 C -0.505 4.505 14 H 0.085 0.915 15 C 0.044 3.956 16 N -0.810 5.810 17 Si 1.068 2.932 18 H -0.275 1.275 19 H -0.262 1.262 20 H -0.287 1.287 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.141 0.859 27 H 0.114 0.886 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 9.671 0.501 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.094 4.094 4 C -0.314 4.314 5 S 0.322 5.678 6 C -0.415 4.415 7 C 0.272 3.728 8 O -0.349 6.349 9 C -0.048 4.048 10 C -0.062 4.062 11 C -0.242 4.242 12 C 0.089 3.911 13 C -0.534 4.534 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.431 5.431 17 Si 0.894 3.106 18 H -0.201 1.201 19 H -0.186 1.186 20 H -0.215 1.215 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.158 0.842 27 H 0.132 0.868 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.451 9.920 1.393 10.595 hybrid contribution -1.167 -0.651 -1.106 1.735 sum 2.284 9.268 0.287 9.550 Atomic orbital electron populations 1.20586 0.92065 1.01324 1.01286 1.19734 0.95267 0.92567 1.03867 1.19643 0.90317 0.97180 1.02233 1.22243 0.96943 0.94188 1.18001 1.83282 0.95127 1.08618 1.80812 1.23299 1.00086 0.98149 1.19990 1.21810 0.85741 0.94608 0.70672 1.90547 1.48826 1.58780 1.36718 1.20682 0.95459 0.96178 0.92505 1.17998 0.91134 0.93999 1.03021 1.21015 0.93855 0.94569 1.14742 1.17444 0.91114 0.92815 0.89775 1.20642 1.05677 0.94278 1.32766 0.89719 1.27258 1.01777 0.91156 0.97470 1.70565 1.19450 1.24403 1.28728 0.83628 0.74316 0.76923 0.75767 1.20133 1.18633 1.21461 0.92174 0.93366 0.91394 0.87684 0.88732 0.84177 0.86814 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.60 36.00 0.35 -1.36 15 2 C -0.11 -2.35 5.89 -104.42 -0.61 -2.96 15 3 C -0.07 -1.41 9.61 -39.67 -0.38 -1.79 15 4 C -0.20 -4.02 6.52 -37.88 -0.25 -4.27 15 5 S 0.06 0.95 23.21 -107.50 -2.50 -1.55 15 6 C -0.30 -5.14 6.13 -39.69 -0.24 -5.39 15 7 C 0.41 6.13 11.46 32.09 0.37 6.50 15 8 O -0.47 -8.48 17.41 5.47 0.10 -8.39 15 9 C -0.01 -0.26 9.74 -40.21 -0.39 -0.66 15 10 C -0.06 -1.21 5.86 -107.15 -0.63 -1.84 15 11 C -0.22 -5.11 7.30 -37.96 -0.28 -5.39 15 12 C 0.09 2.19 5.11 -107.03 -0.55 1.65 15 13 C -0.51 -12.49 8.76 -37.82 -0.33 -12.83 15 14 H 0.08 2.11 6.50 -52.49 -0.34 1.77 15 15 C 0.04 1.09 5.41 -17.35 -0.09 0.99 15 16 N -0.81 -20.71 13.66 55.54 0.76 -19.95 15 17 Si 1.07 23.66 24.90 -169.99 -4.23 19.43 15 18 H -0.27 -5.87 6.46 56.52 0.37 -5.51 15 19 H -0.26 -5.81 7.02 56.52 0.40 -5.41 15 20 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.05 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.07 1.25 6.28 -51.93 -0.33 0.93 15 24 H 0.11 1.78 8.06 -52.49 -0.42 1.35 15 25 H 0.10 1.02 8.06 -52.49 -0.42 0.60 15 26 H 0.14 2.62 7.89 -52.49 -0.41 2.20 15 27 H 0.11 2.66 4.43 -52.49 -0.23 2.43 15 28 H 0.29 7.09 8.73 -40.82 -0.36 6.74 15 LS Contribution 257.32 15.07 3.88 3.88 Total: -1.00 -26.49 257.32 -7.23 -33.73 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.19 Total: 0.19 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -3.04 Total: -27.33 kcal Atomic # 7 Polarization: -20.71 SS G_CDS: 0.76 Total: -19.95 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.10 Total: -8.39 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.23 Total: 19.43 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.49 -7.23 -33.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383474.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.100 kcal (2) G-P(sol) polarization free energy of solvation -26.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds