Wall clock time and date at job start Mon Mar 30 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35634 * 119.93861 * 2 1 4 4 C 1.40477 * 120.85334 * 179.97438 * 3 2 1 5 5 S 1.76080 * 130.26194 * 180.02562 * 4 3 2 6 6 C 1.75445 * 91.70838 * 179.97438 * 5 4 3 7 7 C 1.41802 * 124.62972 * 180.02562 * 6 5 4 8 8 O 1.21380 * 120.00242 * 180.02562 * 7 6 5 9 9 C 1.34049 * 110.74034 * 359.97438 * 6 5 4 10 10 C 1.40471 * 115.49967 * 0.02562 * 9 6 5 11 11 C 1.40997 * 128.65391 * 180.32506 * 10 9 6 12 12 C 1.39773 * 120.00289 * 180.19606 * 11 10 9 13 13 C 1.41271 * 120.00506 * 179.72271 * 12 11 10 14 14 H 1.07995 * 119.99829 * 209.67509 * 13 12 11 15 15 C 1.39859 * 119.99921 * 29.67948 * 13 12 11 16 16 N 1.30887 * 120.00076 * 197.12012 * 15 13 12 17 17 Si 1.86805 * 120.00366 * 17.12293 * 15 13 12 18 18 H 1.48503 * 109.46800 * 269.99923 * 17 15 13 19 19 H 1.48501 * 109.47044 * 29.99475 * 17 15 13 20 20 H 1.48491 * 109.47385 * 149.99781 * 17 15 13 21 21 H 1.09006 * 109.47150 * 270.02342 * 1 2 3 22 22 H 1.09000 * 109.47383 * 30.01812 * 1 2 3 23 23 H 1.09002 * 109.47300 * 150.02115 * 1 2 3 24 24 H 1.07998 * 119.57473 * 359.96163 * 3 2 1 25 25 H 1.07998 * 119.99907 * 359.97438 * 7 6 5 26 26 H 1.08002 * 122.24860 * 179.97438 * 9 6 5 27 27 H 1.07998 * 120.00177 * 359.92317 * 11 10 9 28 28 H 0.97006 * 119.99955 * 355.42142 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1838 1.1754 0.0000 4 6 3.5884 1.1978 0.0005 5 16 4.7048 2.5594 0.0013 6 6 6.0941 1.4880 0.0023 7 6 7.4448 1.9199 0.0038 8 8 8.3430 1.1035 0.0040 9 6 5.7045 0.2054 0.0027 10 6 4.3156 -0.0047 0.0016 11 6 3.6094 -1.2251 0.0079 12 6 2.2117 -1.2239 0.0013 13 6 1.5042 -2.4467 0.0017 14 1 0.5326 -2.5085 -0.4657 15 6 2.0620 -3.5771 0.6075 16 7 1.5915 -4.7669 0.3314 17 14 3.4785 -3.3891 1.8107 18 1 4.7660 -3.4550 1.0736 19 1 3.3703 -2.0792 2.5018 20 1 3.4253 -4.4835 2.8129 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6359 2.1060 -0.0006 25 1 7.6742 2.9752 0.0039 26 1 6.4109 -0.6115 0.0029 27 1 4.1485 -2.1609 0.0133 28 1 0.8140 -4.8602 -0.2411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396383474.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:42 Heat of formation + Delta-G solvation = -25.098279 kcal Electronic energy + Delta-G solvation = -14764.059330 eV Core-core repulsion = 12256.085050 eV Total energy + Delta-G solvation = -2507.974281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76780 -39.93490 -36.95169 -35.37799 -32.40785 -32.07043 -28.57158 -27.11497 -25.13931 -23.70475 -22.01092 -20.92150 -19.70752 -18.85747 -17.03849 -16.97440 -16.22344 -16.02249 -15.70852 -15.59685 -15.17701 -14.73287 -14.28455 -14.16592 -13.77485 -13.64613 -12.93597 -12.82340 -12.59494 -12.29375 -12.03395 -11.62010 -11.50313 -11.35291 -11.04306 -10.93318 -10.34108 -9.49130 -9.20998 -8.56208 -6.56844 -0.79386 0.56625 0.66570 0.94902 1.02356 1.32780 1.44204 1.67775 1.92012 2.11397 2.50751 3.28071 3.39508 3.94946 4.13416 4.30560 4.34787 4.44492 4.60814 4.73323 4.89527 4.90414 5.06562 5.09876 5.31498 5.42381 5.46241 5.54705 5.77680 5.90848 6.33605 6.35738 6.48706 6.72545 7.99081 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.008734 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.263938 B = 3205.241722 C = 4171.273281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.123 4.123 3 C -0.071 4.071 4 C -0.214 4.214 5 S 0.156 5.844 6 C -0.291 4.291 7 C 0.419 3.581 8 O -0.500 6.500 9 C -0.053 4.053 10 C -0.072 4.072 11 C -0.243 4.243 12 C 0.074 3.926 13 C -0.531 4.531 14 H 0.069 0.931 15 C 0.016 3.984 16 N -0.843 5.843 17 Si 1.095 2.905 18 H -0.271 1.271 19 H -0.265 1.265 20 H -0.280 1.280 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.143 0.857 25 H 0.158 0.842 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 13.843 0.735 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.092 4.092 4 C -0.330 4.330 5 S 0.422 5.578 6 C -0.407 4.407 7 C 0.280 3.720 8 O -0.378 6.378 9 C -0.088 4.088 10 C -0.078 4.078 11 C -0.266 4.266 12 C 0.070 3.930 13 C -0.561 4.561 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.467 5.467 17 Si 0.919 3.081 18 H -0.197 1.197 19 H -0.189 1.189 20 H -0.207 1.207 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.161 0.839 25 H 0.174 0.826 26 H 0.153 0.847 27 H 0.119 0.881 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.624 14.114 1.622 14.941 hybrid contribution -1.387 -1.552 -1.233 2.419 sum 3.236 12.563 0.389 12.979 Atomic orbital electron populations 1.20598 0.90014 1.02145 1.02117 1.20119 0.97036 0.92208 1.03237 1.20024 0.90404 0.98071 1.00744 1.22872 0.98177 0.96119 1.15816 1.82935 0.91924 1.04739 1.78201 1.23908 1.02268 0.97725 1.16837 1.22598 0.83916 0.96620 0.68827 1.90561 1.49391 1.60246 1.37581 1.20641 0.94530 0.97536 0.96090 1.18205 0.92420 0.94008 1.03197 1.21049 0.94027 0.95196 1.16332 1.17657 0.91539 0.93571 0.90201 1.20599 1.05582 0.95345 1.34536 0.91253 1.27938 1.02804 0.91073 0.98013 1.70612 1.20530 1.24852 1.30754 0.83255 0.73228 0.76715 0.74924 1.19704 1.18938 1.20708 0.91259 0.90071 0.93003 0.83945 0.82621 0.84683 0.88131 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.16 9.60 71.23 0.68 -2.48 15 2 C -0.12 -5.06 5.89 -19.73 -0.12 -5.18 15 3 C -0.07 -2.57 9.61 22.21 0.21 -2.35 15 4 C -0.21 -8.03 6.52 23.37 0.15 -7.88 15 5 S 0.16 4.31 23.21 -56.49 -1.31 3.00 15 6 C -0.29 -8.88 6.13 22.20 0.14 -8.74 15 7 C 0.42 10.53 11.46 68.70 0.79 11.32 15 8 O -0.50 -16.48 17.41 -3.34 -0.06 -16.54 15 9 C -0.05 -2.00 9.74 21.86 0.21 -1.78 15 10 C -0.07 -3.07 5.86 -21.50 -0.13 -3.19 15 11 C -0.24 -11.63 7.30 23.32 0.17 -11.46 15 12 C 0.07 3.59 5.11 -21.43 -0.11 3.48 15 13 C -0.53 -27.67 8.76 23.41 0.21 -27.46 15 14 H 0.07 3.70 6.50 -2.91 -0.02 3.68 15 15 C 0.02 0.86 5.41 85.23 0.46 1.32 15 16 N -0.84 -45.64 13.66 21.81 0.30 -45.34 15 17 Si 1.10 49.91 24.90 68.60 1.71 51.61 15 18 H -0.27 -11.94 6.46 99.48 0.64 -11.30 15 19 H -0.26 -11.97 7.02 99.48 0.70 -11.27 15 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 21 H 0.07 2.23 8.14 -2.38 -0.02 2.21 15 22 H 0.08 2.21 8.08 -2.39 -0.02 2.19 15 23 H 0.05 1.94 6.28 -2.39 -0.01 1.92 15 24 H 0.14 4.08 8.06 -2.91 -0.02 4.05 15 25 H 0.16 2.21 8.06 -2.91 -0.02 2.18 15 26 H 0.14 5.09 7.89 -2.91 -0.02 5.07 15 27 H 0.10 4.94 4.43 -2.91 -0.01 4.93 15 28 H 0.28 14.89 8.73 -92.70 -0.81 14.08 15 Total: -1.00 -59.81 257.32 4.39 -55.42 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.08 Total: 6.25 kcal Atomic # 6 Polarization: -57.08 SS G_CDS: 2.67 Total: -54.41 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.30 Total: -45.34 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.06 Total: -16.54 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 1.71 Total: 51.61 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.31 Total: 3.00 kcal Total: -59.81 4.39 -55.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396383474.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.322 kcal (2) G-P(sol) polarization free energy of solvation -59.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds