Wall clock time and date at job start Mon Mar 30 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38062 * 119.26768 * 2 1 4 4 C 1.37616 * 121.16608 * 179.75188 * 3 2 1 5 5 C 1.40464 * 119.92536 * 0.49684 * 4 3 2 6 6 C 1.40761 * 120.44481 * 179.73973 * 5 4 3 7 7 H 1.08003 * 119.99857 * 139.37752 * 6 5 4 8 8 C 1.39999 * 120.00238 * 319.38337 * 6 5 4 9 9 N 1.30825 * 120.00333 * 174.82717 * 8 6 5 10 10 Si 1.86804 * 119.99623 * 354.82969 * 8 6 5 11 11 H 1.48501 * 109.47049 * 89.45951 * 10 8 6 12 12 H 1.48502 * 109.46975 * 209.45708 * 10 8 6 13 13 H 1.48495 * 109.47192 * 329.45925 * 10 8 6 14 14 C 1.47306 * 119.11881 * 359.76511 * 5 4 3 15 15 C 1.45775 * 129.96638 * 180.02562 * 14 5 4 16 16 C 1.46150 * 123.19901 * 359.97438 * 15 14 5 17 17 O 1.21388 * 119.99964 * 175.69603 * 16 15 14 18 18 C 1.35972 * 113.59980 * 179.97438 * 15 14 5 19 19 S 1.70024 * 111.90186 * 359.97438 * 18 15 14 20 20 C 1.39205 * 118.61110 * 359.97438 * 14 5 4 21 21 H 1.08998 * 109.47607 * 269.73460 * 1 2 3 22 22 H 1.08997 * 109.47575 * 149.72823 * 1 2 3 23 23 H 1.09007 * 109.47020 * 29.72716 * 1 2 3 24 24 H 1.08001 * 119.41931 * 0.02562 * 3 2 1 25 25 H 1.07997 * 120.03988 * 180.25718 * 4 3 2 26 26 H 0.96996 * 119.99865 * 180.02562 * 9 8 6 27 27 H 1.07996 * 119.99604 * 355.69362 * 16 15 14 28 28 H 1.08000 * 124.04807 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.2044 0.0000 4 6 3.5573 1.2500 0.0051 5 6 4.2980 0.0565 -0.0001 6 6 5.7052 0.0904 -0.0005 7 1 6.2624 -0.6088 0.6054 8 6 6.3826 1.0306 -0.7861 9 7 7.6849 1.1299 -0.7102 10 14 5.4269 2.1433 -1.9428 11 1 5.0305 3.3809 -1.2242 12 1 6.2796 2.4978 -3.1058 13 1 4.2108 1.4358 -2.4181 14 6 3.5826 -1.2311 -0.0058 15 6 4.1045 -2.5923 -0.0113 16 6 5.5329 -2.9016 -0.0125 17 8 5.9041 -4.0550 0.0617 18 6 3.1360 -3.5466 -0.0151 19 16 1.5770 -2.8681 -0.0116 20 6 2.1906 -1.2203 -0.0052 21 1 -0.3634 -0.0048 1.0276 22 1 -0.3634 -0.8875 -0.5180 23 1 -0.3633 0.8925 -0.5096 24 1 1.6206 2.1271 0.0004 25 1 4.0667 2.2023 0.0092 26 1 8.1541 1.7816 -1.2542 27 1 6.2580 -2.1041 -0.0796 28 1 3.3333 -4.6084 -0.0189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396384058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:30 Heat of formation + Delta-G solvation = -7.321071 kcal Electronic energy + Delta-G solvation = -15065.366366 eV Core-core repulsion = 12558.162963 eV Total energy + Delta-G solvation = -2507.203403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.90157 -37.75230 -34.32286 -34.14086 -31.68864 -28.62220 -27.97764 -25.13845 -23.74323 -21.57207 -20.96679 -19.01154 -18.00483 -16.24185 -15.62030 -15.28517 -15.05882 -14.01212 -13.89620 -13.75616 -13.51129 -13.15904 -13.12583 -12.12711 -11.93811 -11.71533 -11.66649 -11.51515 -11.36836 -10.87844 -10.71546 -10.03798 -9.96597 -9.84984 -9.37998 -8.99209 -8.38421 -7.72206 -7.18012 -6.97519 -4.73530 1.20332 2.18309 2.21833 2.32952 2.63672 2.97104 3.06615 3.16890 3.67167 3.80687 4.23357 4.96904 5.30540 5.40341 5.63515 5.73237 5.97090 6.03858 6.08939 6.15821 6.26161 6.42636 6.57565 6.62615 6.84265 6.96130 7.20077 7.38660 7.54707 7.63755 7.99299 8.13230 8.27743 8.44829 9.83295 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.011946 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.842926 B = 2343.370755 C = 3603.820143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.184 4.184 3 C -0.045 4.045 4 C -0.246 4.246 5 C 0.131 3.869 6 C -0.440 4.440 7 H 0.104 0.896 8 C 0.083 3.917 9 N -0.799 5.799 10 Si 0.910 3.090 11 H -0.265 1.265 12 H -0.288 1.288 13 H -0.241 1.241 14 C -0.129 4.129 15 C -0.148 4.148 16 C 0.391 3.609 17 O -0.491 6.491 18 C -0.219 4.219 19 S 0.112 5.888 20 C -0.097 4.097 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.291 0.709 27 H 0.132 0.868 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -0.120 -0.679 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.191 4.191 3 C -0.066 4.066 4 C -0.267 4.267 5 C 0.126 3.874 6 C -0.468 4.468 7 H 0.121 0.879 8 C -0.137 4.137 9 N -0.422 5.422 10 Si 0.736 3.264 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.164 1.164 14 C -0.135 4.135 15 C -0.164 4.164 16 C 0.251 3.749 17 O -0.368 6.368 18 C -0.355 4.355 19 S 0.379 5.621 20 C -0.212 4.212 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.148 0.852 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.208 -1.365 -0.697 9.334 hybrid contribution 1.178 1.196 -0.480 1.746 sum -8.029 -0.169 -1.177 8.117 Atomic orbital electron populations 1.20500 0.92736 1.00991 1.00596 1.18449 0.94044 0.90317 1.16278 1.20304 0.94146 0.95365 0.96760 1.20875 0.93493 0.97132 1.15179 1.18412 0.92992 0.88211 0.87795 1.19519 0.89951 1.14649 1.22658 0.87890 1.26162 0.95117 0.95561 0.96893 1.69587 1.08825 1.30120 1.33628 0.86277 0.80623 0.80405 0.79101 1.19096 1.21518 1.16380 1.20007 0.90901 0.91939 1.10611 1.20810 0.96542 0.92052 1.06964 1.24429 0.90403 0.91587 0.68457 1.90430 1.83523 1.25732 1.37131 1.25135 0.97477 1.03386 1.09475 1.82308 1.06147 0.97417 1.76252 1.22232 0.96161 0.95710 1.07122 0.92988 0.93263 0.92692 0.87835 0.87104 0.89809 0.85248 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.83 36.00 0.35 -1.05 15 2 C -0.18 -3.57 5.92 -104.07 -0.62 -4.19 15 3 C -0.04 -0.88 9.55 -39.87 -0.38 -1.26 15 4 C -0.25 -5.35 6.95 -38.97 -0.27 -5.62 15 5 C 0.13 3.05 5.13 -104.42 -0.54 2.52 15 6 C -0.44 -10.59 8.07 -37.97 -0.31 -10.90 15 7 H 0.10 2.54 6.00 -52.48 -0.32 2.22 15 8 C 0.08 1.97 5.50 -17.32 -0.10 1.87 15 9 N -0.80 -19.34 13.93 55.55 0.77 -18.57 15 10 Si 0.91 19.00 24.54 -169.99 -4.17 14.83 15 11 H -0.27 -5.32 6.75 56.52 0.38 -4.94 15 12 H -0.29 -5.87 7.11 56.52 0.40 -5.47 15 13 H -0.24 -5.21 6.71 56.52 0.38 -4.83 15 14 C -0.13 -2.89 6.20 -102.84 -0.64 -3.53 15 15 C -0.15 -3.16 5.97 -104.53 -0.62 -3.78 15 16 C 0.39 8.34 10.94 33.91 0.37 8.71 15 17 O -0.49 -11.04 17.50 5.46 0.10 -10.94 15 18 C -0.22 -4.15 10.41 29.92 0.31 -3.84 15 19 S 0.11 1.94 22.20 -107.50 -2.39 -0.44 15 20 C -0.10 -2.01 6.26 -38.61 -0.24 -2.25 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.05 0.72 7.52 -51.93 -0.39 0.33 15 23 H 0.05 0.75 8.07 -51.93 -0.42 0.33 15 24 H 0.10 1.72 8.06 -52.49 -0.42 1.30 15 25 H 0.11 2.35 5.15 -52.49 -0.27 2.08 15 26 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 27 H 0.13 2.79 4.84 -52.49 -0.25 2.53 15 28 H 0.16 2.78 7.98 -52.49 -0.42 2.36 15 LS Contribution 253.54 15.07 3.82 3.82 Total: -1.00 -25.69 253.54 -6.63 -32.32 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.09 Total: 2.30 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -2.67 Total: -23.32 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.77 Total: -18.57 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.10 Total: -10.94 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.17 Total: 14.83 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.39 Total: -0.44 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -25.69 -6.63 -32.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396384058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.000 kcal (2) G-P(sol) polarization free energy of solvation -25.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds