Wall clock time and date at job start Mon Mar 30 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38062 * 119.26768 * 2 1 4 4 C 1.37616 * 121.16608 * 179.75188 * 3 2 1 5 5 C 1.40464 * 119.92536 * 0.49684 * 4 3 2 6 6 C 1.40761 * 120.44481 * 179.73973 * 5 4 3 7 7 H 1.08003 * 119.99857 * 139.37752 * 6 5 4 8 8 C 1.39999 * 120.00238 * 319.38337 * 6 5 4 9 9 N 1.30825 * 120.00333 * 174.82717 * 8 6 5 10 10 Si 1.86804 * 119.99623 * 354.82969 * 8 6 5 11 11 H 1.48501 * 109.47049 * 89.45951 * 10 8 6 12 12 H 1.48502 * 109.46975 * 209.45708 * 10 8 6 13 13 H 1.48495 * 109.47192 * 329.45925 * 10 8 6 14 14 C 1.47306 * 119.11881 * 359.76511 * 5 4 3 15 15 C 1.45775 * 129.96638 * 180.02562 * 14 5 4 16 16 C 1.46150 * 123.19901 * 359.97438 * 15 14 5 17 17 O 1.21388 * 119.99964 * 175.69603 * 16 15 14 18 18 C 1.35972 * 113.59980 * 179.97438 * 15 14 5 19 19 S 1.70024 * 111.90186 * 359.97438 * 18 15 14 20 20 C 1.39205 * 118.61110 * 359.97438 * 14 5 4 21 21 H 1.08998 * 109.47607 * 269.73460 * 1 2 3 22 22 H 1.08997 * 109.47575 * 149.72823 * 1 2 3 23 23 H 1.09007 * 109.47020 * 29.72716 * 1 2 3 24 24 H 1.08001 * 119.41931 * 0.02562 * 3 2 1 25 25 H 1.07997 * 120.03988 * 180.25718 * 4 3 2 26 26 H 0.96996 * 119.99865 * 180.02562 * 9 8 6 27 27 H 1.07996 * 119.99604 * 355.69362 * 16 15 14 28 28 H 1.08000 * 124.04807 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.2044 0.0000 4 6 3.5573 1.2500 0.0051 5 6 4.2980 0.0565 -0.0001 6 6 5.7052 0.0904 -0.0005 7 1 6.2624 -0.6088 0.6054 8 6 6.3826 1.0306 -0.7861 9 7 7.6849 1.1299 -0.7102 10 14 5.4269 2.1433 -1.9428 11 1 5.0305 3.3809 -1.2242 12 1 6.2796 2.4978 -3.1058 13 1 4.2108 1.4358 -2.4181 14 6 3.5826 -1.2311 -0.0058 15 6 4.1045 -2.5923 -0.0113 16 6 5.5329 -2.9016 -0.0125 17 8 5.9041 -4.0550 0.0617 18 6 3.1360 -3.5466 -0.0151 19 16 1.5770 -2.8681 -0.0116 20 6 2.1906 -1.2203 -0.0052 21 1 -0.3634 -0.0048 1.0276 22 1 -0.3634 -0.8875 -0.5180 23 1 -0.3633 0.8925 -0.5096 24 1 1.6206 2.1271 0.0004 25 1 4.0667 2.2023 0.0092 26 1 8.1541 1.7816 -1.2542 27 1 6.2580 -2.1041 -0.0796 28 1 3.3333 -4.6084 -0.0189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396384058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:30 Heat of formation + Delta-G solvation = -20.974295 kcal Electronic energy + Delta-G solvation = -15065.958415 eV Core-core repulsion = 12558.162963 eV Total energy + Delta-G solvation = -2507.795451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55175 -39.41003 -35.96763 -35.76057 -33.29665 -30.22489 -29.47692 -26.77582 -25.30502 -23.20200 -22.58476 -20.63463 -19.70067 -17.84564 -17.26072 -16.89966 -16.69377 -15.63544 -15.48802 -15.40157 -15.08743 -14.82543 -14.60824 -13.67433 -13.44357 -13.22485 -13.14670 -13.02450 -12.92882 -12.45204 -12.27026 -11.71352 -11.52425 -11.47985 -11.02277 -10.69458 -9.97465 -9.30680 -8.89030 -8.54041 -6.49156 -0.41321 0.54488 0.67290 0.69496 1.06289 1.29802 1.39684 1.50079 2.01299 2.12425 2.54518 3.27220 3.66898 3.85050 4.20230 4.22596 4.49788 4.60743 4.62118 4.75078 4.95253 4.95604 5.01594 5.11009 5.28211 5.33419 5.58275 5.77479 5.90169 6.01787 6.26840 6.43783 6.59947 6.71503 8.16575 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.011946 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.842926 B = 2343.370755 C = 3603.820143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.169 4.169 3 C -0.056 4.056 4 C -0.253 4.253 5 C 0.108 3.892 6 C -0.470 4.470 7 H 0.078 0.922 8 C 0.051 3.949 9 N -0.844 5.844 10 Si 0.957 3.043 11 H -0.251 1.251 12 H -0.283 1.283 13 H -0.252 1.252 14 C -0.144 4.144 15 C -0.186 4.186 16 C 0.398 3.602 17 O -0.510 6.510 18 C -0.205 4.205 19 S 0.207 5.793 20 C -0.136 4.136 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.139 0.861 25 H 0.111 0.889 26 H 0.296 0.704 27 H 0.120 0.880 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 -0.230 -0.969 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.175 4.175 3 C -0.077 4.077 4 C -0.274 4.274 5 C 0.103 3.897 6 C -0.499 4.499 7 H 0.096 0.904 8 C -0.164 4.164 9 N -0.470 5.470 10 Si 0.780 3.220 11 H -0.175 1.175 12 H -0.210 1.210 13 H -0.176 1.176 14 C -0.150 4.150 15 C -0.201 4.201 16 C 0.259 3.741 17 O -0.388 6.388 18 C -0.341 4.341 19 S 0.475 5.525 20 C -0.251 4.251 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.157 0.843 25 H 0.129 0.871 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.067 -1.462 -0.978 13.184 hybrid contribution 2.041 1.041 -0.318 2.313 sum -11.025 -0.421 -1.297 11.109 Atomic orbital electron populations 1.20606 0.89346 1.02708 1.02243 1.19075 0.96503 0.89645 1.12310 1.20716 0.93443 0.97249 0.96281 1.21058 0.94767 0.96614 1.14958 1.18583 0.92809 0.89468 0.88844 1.19441 0.90681 1.15505 1.24261 0.90406 1.26709 0.95603 0.96411 0.97677 1.69626 1.09803 1.31891 1.35630 0.85585 0.79071 0.79437 0.77878 1.17544 1.20979 1.17583 1.20245 0.92189 0.92089 1.10468 1.20756 0.96558 0.92472 1.10351 1.24274 0.90989 0.91001 0.67790 1.90404 1.83864 1.25969 1.38588 1.25618 0.98684 1.04202 1.05633 1.81955 1.03029 0.93707 1.73802 1.22731 0.95943 0.98549 1.07836 0.91191 0.92239 0.90428 0.84325 0.87107 0.89357 0.86383 0.80325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.32 9.83 71.23 0.70 -1.62 15 2 C -0.17 -5.92 5.92 -19.51 -0.12 -6.03 15 3 C -0.06 -2.04 9.55 22.08 0.21 -1.83 15 4 C -0.25 -10.82 6.95 22.67 0.16 -10.66 15 5 C 0.11 5.10 5.13 -19.73 -0.10 5.00 15 6 C -0.47 -23.93 8.07 23.31 0.19 -23.74 15 7 H 0.08 4.20 6.00 -2.91 -0.02 4.18 15 8 C 0.05 2.55 5.50 85.27 0.47 3.02 15 9 N -0.84 -43.22 13.93 21.84 0.30 -42.92 15 10 Si 0.96 39.69 24.54 68.60 1.68 41.37 15 11 H -0.25 -9.65 6.75 99.48 0.67 -8.98 15 12 H -0.28 -11.30 7.11 99.48 0.71 -10.59 15 13 H -0.25 -10.76 6.71 99.48 0.67 -10.09 15 14 C -0.14 -6.42 6.20 -18.71 -0.12 -6.54 15 15 C -0.19 -7.87 5.97 -19.80 -0.12 -7.99 15 16 C 0.40 17.63 10.94 69.88 0.76 18.39 15 17 O -0.51 -23.38 17.50 -3.36 -0.06 -23.44 15 18 C -0.20 -7.27 10.41 67.29 0.70 -6.57 15 19 S 0.21 6.32 22.20 -56.49 -1.25 5.06 15 20 C -0.14 -5.22 6.26 22.90 0.14 -5.08 15 21 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.06 1.39 7.52 -2.39 -0.02 1.38 15 23 H 0.08 1.66 8.07 -2.38 -0.02 1.64 15 24 H 0.14 4.00 8.06 -2.91 -0.02 3.97 15 25 H 0.11 4.64 5.15 -2.91 -0.01 4.63 15 26 H 0.30 13.73 8.30 -92.71 -0.77 12.97 15 27 H 0.12 5.53 4.84 -2.91 -0.01 5.52 15 28 H 0.18 5.65 7.98 -2.91 -0.02 5.62 15 Total: -1.00 -56.46 253.54 4.69 -51.77 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.13 Total: 11.81 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 2.88 Total: -43.66 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.30 Total: -42.92 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.68 Total: 41.37 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.25 Total: 5.06 kcal Total: -56.46 4.69 -51.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396384058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.800 kcal (2) G-P(sol) polarization free energy of solvation -56.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds