Wall clock time and date at job start Mon Mar 30 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32854 * 122.04761 * 2 1 4 4 S 1.75500 * 110.72975 * 179.86293 * 3 2 1 5 5 C 1.76104 * 91.51324 * 0.33662 * 4 3 2 6 6 C 1.38723 * 130.42107 * 179.83964 * 5 4 3 7 7 C 1.40301 * 121.08366 * 179.97438 * 6 5 4 8 8 C 1.41134 * 119.78925 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99341 * 34.34104 * 8 7 6 10 10 C 1.39862 * 120.00470 * 214.34260 * 8 7 6 11 11 N 1.30888 * 119.99923 * 359.12382 * 10 8 7 12 12 Si 1.86796 * 120.00361 * 179.12078 * 10 8 7 13 13 H 1.48500 * 109.47230 * 89.99932 * 12 10 8 14 14 H 1.48496 * 109.47347 * 210.00003 * 12 10 8 15 15 H 1.48500 * 109.47082 * 330.00048 * 12 10 8 16 16 C 1.40687 * 120.42892 * 0.02562 * 7 6 5 17 17 C 1.38355 * 120.01386 * 359.95138 * 16 7 6 18 18 C 1.46709 * 120.15965 * 180.02562 * 17 16 7 19 19 O 1.21318 * 119.99861 * 354.73126 * 18 17 16 20 20 C 1.39804 * 122.04790 * 180.28872 * 2 1 3 21 21 H 1.09001 * 109.46523 * 255.37944 * 1 2 3 22 22 H 1.08998 * 109.47466 * 135.37469 * 1 2 3 23 23 H 1.08998 * 109.46924 * 15.37680 * 1 2 3 24 24 H 1.07991 * 124.63247 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.45854 * 359.97438 * 6 5 4 26 26 H 0.97005 * 120.00246 * 180.02562 * 11 10 8 27 27 H 1.08003 * 119.99604 * 179.97438 * 16 7 6 28 28 H 1.08001 * 120.00062 * 174.73737 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.1261 0.0000 4 16 3.9329 0.7817 0.0039 5 6 3.6330 -0.9536 -0.0048 6 6 4.5205 -2.0198 -0.0097 7 6 4.0605 -3.3452 -0.0160 8 6 4.9877 -4.4092 -0.0214 9 1 5.9249 -4.3114 0.5064 10 6 4.6930 -5.5902 -0.7103 11 7 3.5500 -5.7153 -1.3357 12 14 5.9306 -6.9891 -0.7380 13 1 5.6825 -7.8924 0.4142 14 1 5.7878 -7.7514 -2.0044 15 1 7.3055 -6.4355 -0.6459 16 6 2.6808 -3.6206 -0.0179 17 6 1.7677 -2.5812 -0.0127 18 6 0.3282 -2.8647 -0.0141 19 8 -0.0647 -4.0079 -0.1164 20 6 2.2489 -1.1850 -0.0060 21 1 -0.3632 -0.2594 0.9944 22 1 -0.3634 -0.7314 -0.7219 23 1 -0.3633 0.9909 -0.2725 24 1 1.7845 2.1178 0.0004 25 1 5.5831 -1.8264 -0.0088 26 1 3.3454 -6.5345 -1.8132 27 1 2.3344 -4.6435 -0.0232 28 1 -0.3816 -2.0557 0.0758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396384947.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:04 Heat of formation + Delta-G solvation = -0.084045 kcal Electronic energy + Delta-G solvation = -14905.947042 eV Core-core repulsion = 12399.057460 eV Total energy + Delta-G solvation = -2506.889582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.97623 -37.43851 -35.66681 -33.17955 -30.40141 -29.51340 -27.47571 -25.53272 -23.56298 -21.82730 -20.12976 -18.80093 -17.83796 -16.18884 -15.52722 -15.39483 -14.64427 -14.08623 -13.93129 -13.79584 -13.29992 -13.07614 -12.54364 -12.30915 -12.02032 -11.83018 -11.50870 -11.30077 -11.01811 -10.79854 -10.46748 -10.21776 -9.93831 -9.88635 -9.33076 -8.78851 -8.50984 -7.41279 -7.05600 -6.82184 -4.65233 1.28500 2.20286 2.47390 2.84460 2.86311 2.95283 2.99418 3.17756 3.44437 3.74788 4.40564 5.04250 5.23262 5.48055 5.52431 5.79673 5.88603 5.98524 6.15107 6.20104 6.56527 6.60421 6.76250 6.88187 6.96983 7.06093 7.43863 7.45892 7.59825 7.82054 8.18426 8.21068 8.48301 8.53427 9.92166 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.008091 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.522577 B = 3459.843137 C = 4456.141117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.053 4.053 3 C -0.260 4.260 4 S 0.011 5.989 5 C -0.072 4.072 6 C -0.197 4.197 7 C 0.109 3.891 8 C -0.438 4.438 9 H 0.087 0.913 10 C 0.065 3.935 11 N -0.790 5.790 12 Si 0.925 3.075 13 H -0.265 1.265 14 H -0.274 1.274 15 H -0.259 1.259 16 C -0.038 4.038 17 C -0.162 4.162 18 C 0.365 3.635 19 O -0.477 6.477 20 C -0.159 4.159 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.148 0.852 25 H 0.102 0.898 26 H 0.289 0.711 27 H 0.149 0.851 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 5.812 1.442 6.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.393 4.393 4 S 0.274 5.726 5 C -0.187 4.187 6 C -0.223 4.223 7 C 0.103 3.897 8 C -0.468 4.468 9 H 0.105 0.895 10 C -0.153 4.153 11 N -0.415 5.415 12 Si 0.749 3.251 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.183 1.183 16 C -0.057 4.057 17 C -0.166 4.166 18 C 0.227 3.773 19 O -0.352 6.352 20 C -0.165 4.165 21 H 0.087 0.913 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.166 0.834 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.166 0.834 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.106 6.024 1.239 6.249 hybrid contribution -0.545 -1.197 -0.180 1.327 sum -1.651 4.828 1.059 5.211 Atomic orbital electron populations 1.20852 0.91542 1.02014 1.01855 1.18418 0.95769 0.91683 1.00650 1.24436 0.95370 1.00698 1.18788 1.83628 1.06614 1.01029 1.81325 1.22146 0.96378 0.95017 1.05184 1.20311 0.96827 0.90568 1.14586 1.17473 0.92179 0.91419 0.88626 1.19692 1.03373 0.96924 1.26765 0.89468 1.26075 0.96235 0.99558 0.93471 1.69701 1.21074 1.27627 1.23094 0.86012 0.80708 0.79623 0.78773 1.19028 1.19885 1.18320 1.22154 0.92622 0.98986 0.91933 1.21378 0.94838 0.91655 1.08732 1.24448 0.91085 0.91212 0.70562 1.90474 1.82312 1.26203 1.36247 1.18440 0.91251 0.91620 1.15210 0.91313 0.91131 0.92063 0.83414 0.87947 0.89963 0.83404 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 8.36 36.01 0.30 -1.15 15 2 C -0.05 -0.97 5.81 -105.89 -0.62 -1.59 15 3 C -0.26 -4.50 10.79 28.88 0.31 -4.19 15 4 S 0.01 0.21 23.30 -107.50 -2.50 -2.30 15 5 C -0.07 -1.63 6.46 -38.61 -0.25 -1.87 15 6 C -0.20 -4.67 9.72 -38.63 -0.38 -5.05 15 7 C 0.11 2.75 5.52 -107.10 -0.59 2.16 15 8 C -0.44 -10.78 9.00 -37.88 -0.34 -11.12 15 9 H 0.09 2.02 7.84 -52.48 -0.41 1.61 15 10 C 0.07 1.54 5.38 -17.35 -0.09 1.45 15 11 N -0.79 -19.59 10.65 55.54 0.59 -18.99 15 12 Si 0.93 17.64 29.56 -169.99 -5.02 12.61 15 13 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 14 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 15 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 16 C -0.04 -0.95 8.13 -38.61 -0.31 -1.26 15 17 C -0.16 -3.70 6.06 -102.58 -0.62 -4.32 15 18 C 0.37 7.37 10.64 34.15 0.36 7.73 15 19 O -0.48 -10.99 17.14 5.52 0.09 -10.90 15 20 C -0.16 -3.46 6.03 -104.67 -0.63 -4.09 15 21 H 0.07 0.87 7.88 -51.93 -0.41 0.46 15 22 H 0.07 0.97 5.93 -51.93 -0.31 0.66 15 23 H 0.06 0.71 8.04 -51.93 -0.42 0.30 15 24 H 0.15 2.11 8.06 -52.49 -0.42 1.69 15 25 H 0.10 2.30 8.06 -52.49 -0.42 1.87 15 26 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 27 H 0.15 3.94 5.73 -52.48 -0.30 3.64 15 28 H 0.10 1.55 4.13 -52.49 -0.22 1.33 15 LS Contribution 257.81 15.07 3.89 3.89 Total: -1.00 -27.18 257.81 -7.86 -35.03 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.04 Total: 3.97 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.86 Total: -23.32 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.59 Total: -18.99 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.02 Total: 12.61 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.50 Total: -2.30 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.18 -7.86 -35.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396384947.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.949 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds