Wall clock time and date at job start Mon Mar 30 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32854 * 122.04761 * 2 1 4 4 S 1.75500 * 110.72975 * 179.86293 * 3 2 1 5 5 C 1.76104 * 91.51324 * 0.33662 * 4 3 2 6 6 C 1.38723 * 130.42107 * 179.83964 * 5 4 3 7 7 C 1.40301 * 121.08366 * 179.97438 * 6 5 4 8 8 C 1.41134 * 119.78925 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99341 * 34.34104 * 8 7 6 10 10 C 1.39862 * 120.00470 * 214.34260 * 8 7 6 11 11 N 1.30888 * 119.99923 * 359.12382 * 10 8 7 12 12 Si 1.86796 * 120.00361 * 179.12078 * 10 8 7 13 13 H 1.48500 * 109.47230 * 89.99932 * 12 10 8 14 14 H 1.48496 * 109.47347 * 210.00003 * 12 10 8 15 15 H 1.48500 * 109.47082 * 330.00048 * 12 10 8 16 16 C 1.40687 * 120.42892 * 0.02562 * 7 6 5 17 17 C 1.38355 * 120.01386 * 359.95138 * 16 7 6 18 18 C 1.46709 * 120.15965 * 180.02562 * 17 16 7 19 19 O 1.21318 * 119.99861 * 354.73126 * 18 17 16 20 20 C 1.39804 * 122.04790 * 180.28872 * 2 1 3 21 21 H 1.09001 * 109.46523 * 255.37944 * 1 2 3 22 22 H 1.08998 * 109.47466 * 135.37469 * 1 2 3 23 23 H 1.08998 * 109.46924 * 15.37680 * 1 2 3 24 24 H 1.07991 * 124.63247 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.45854 * 359.97438 * 6 5 4 26 26 H 0.97005 * 120.00246 * 180.02562 * 11 10 8 27 27 H 1.08003 * 119.99604 * 179.97438 * 16 7 6 28 28 H 1.08001 * 120.00062 * 174.73737 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.1261 0.0000 4 16 3.9329 0.7817 0.0039 5 6 3.6330 -0.9536 -0.0048 6 6 4.5205 -2.0198 -0.0097 7 6 4.0605 -3.3452 -0.0160 8 6 4.9877 -4.4092 -0.0214 9 1 5.9249 -4.3114 0.5064 10 6 4.6930 -5.5902 -0.7103 11 7 3.5500 -5.7153 -1.3357 12 14 5.9306 -6.9891 -0.7380 13 1 5.6825 -7.8924 0.4142 14 1 5.7878 -7.7514 -2.0044 15 1 7.3055 -6.4355 -0.6459 16 6 2.6808 -3.6206 -0.0179 17 6 1.7677 -2.5812 -0.0127 18 6 0.3282 -2.8647 -0.0141 19 8 -0.0647 -4.0079 -0.1164 20 6 2.2489 -1.1850 -0.0060 21 1 -0.3632 -0.2594 0.9944 22 1 -0.3634 -0.7314 -0.7219 23 1 -0.3633 0.9909 -0.2725 24 1 1.7845 2.1178 0.0004 25 1 5.5831 -1.8264 -0.0088 26 1 3.3454 -6.5345 -1.8132 27 1 2.3344 -4.6435 -0.0232 28 1 -0.3816 -2.0557 0.0758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396384947.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:04 Heat of formation + Delta-G solvation = -14.420194 kcal Electronic energy + Delta-G solvation = -14906.568704 eV Core-core repulsion = 12399.057460 eV Total energy + Delta-G solvation = -2507.511244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66240 -39.13539 -37.30306 -34.86682 -32.12512 -31.15107 -28.85624 -27.28237 -25.21865 -23.51622 -21.82605 -20.33866 -19.58252 -17.81547 -17.20818 -17.05680 -16.32800 -15.72158 -15.50059 -15.37484 -14.96065 -14.55992 -14.04835 -13.89608 -13.58849 -13.27836 -13.02499 -12.87765 -12.62785 -12.30196 -11.99319 -11.90311 -11.59564 -11.53641 -11.02974 -10.44259 -10.18381 -9.13239 -8.76109 -8.44099 -6.49681 -0.37404 0.46386 0.87195 1.31101 1.34061 1.36519 1.51136 1.57651 1.78213 2.15480 2.67027 3.40686 3.49406 4.05638 4.18740 4.34455 4.56237 4.69717 4.78078 4.84678 4.91746 5.02175 5.12295 5.20353 5.27136 5.39934 5.74232 5.83204 5.83579 5.99966 6.36298 6.56374 6.69609 6.73849 8.21935 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.008091 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.522577 B = 3459.843137 C = 4456.141117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.075 4.075 3 C -0.230 4.230 4 S 0.041 5.959 5 C -0.113 4.113 6 C -0.203 4.203 7 C 0.079 3.921 8 C -0.478 4.478 9 H 0.088 0.912 10 C 0.026 3.974 11 N -0.833 5.833 12 Si 0.996 3.004 13 H -0.260 1.260 14 H -0.268 1.268 15 H -0.254 1.254 16 C -0.068 4.068 17 C -0.175 4.175 18 C 0.375 3.625 19 O -0.508 6.508 20 C -0.150 4.150 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.193 0.807 25 H 0.103 0.897 26 H 0.291 0.709 27 H 0.123 0.877 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 8.548 1.602 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.363 4.363 4 S 0.304 5.696 5 C -0.228 4.228 6 C -0.229 4.229 7 C 0.073 3.927 8 C -0.508 4.508 9 H 0.106 0.894 10 C -0.188 4.188 11 N -0.459 5.459 12 Si 0.816 3.184 13 H -0.184 1.184 14 H -0.193 1.193 15 H -0.177 1.177 16 C -0.088 4.088 17 C -0.179 4.179 18 C 0.238 3.762 19 O -0.386 6.386 20 C -0.157 4.157 21 H 0.104 0.896 22 H 0.090 0.910 23 H 0.113 0.887 24 H 0.210 0.790 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.295 8.782 1.408 9.185 hybrid contribution -0.266 -1.647 -0.192 1.679 sum -2.561 7.135 1.215 7.678 Atomic orbital electron populations 1.20950 0.88036 1.04305 1.03055 1.18751 0.98366 0.90157 1.01442 1.25097 0.94193 1.02431 1.14608 1.83567 1.08137 0.97362 1.80529 1.22531 0.96923 0.97315 1.06046 1.20429 0.97292 0.90866 1.14321 1.17758 0.92665 0.92452 0.89787 1.19884 1.03808 0.98259 1.28869 0.89430 1.26934 0.97853 1.01561 0.92420 1.69800 1.23002 1.28429 1.24645 0.84980 0.78262 0.76304 0.78904 1.18448 1.19297 1.17732 1.22007 0.93355 0.98700 0.94707 1.21816 0.96268 0.91932 1.07841 1.25089 0.90478 0.91800 0.68821 1.90472 1.82387 1.28084 1.37630 1.18912 0.91631 0.92354 1.12814 0.89577 0.90957 0.88681 0.79010 0.87854 0.89780 0.85886 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.36 71.24 0.60 -1.75 15 2 C -0.08 -2.44 5.81 -20.66 -0.12 -2.56 15 3 C -0.23 -6.76 10.79 66.64 0.72 -6.04 15 4 S 0.04 1.42 23.30 -56.49 -1.32 0.10 15 5 C -0.11 -5.04 6.46 22.90 0.15 -4.89 15 6 C -0.20 -10.04 9.72 22.89 0.22 -9.82 15 7 C 0.08 4.22 5.52 -21.47 -0.12 4.10 15 8 C -0.48 -25.12 9.00 23.37 0.21 -24.91 15 9 H 0.09 4.35 7.84 -2.91 -0.02 4.33 15 10 C 0.03 1.31 5.38 85.23 0.46 1.77 15 11 N -0.83 -43.95 10.65 21.81 0.23 -43.72 15 12 Si 1.00 37.66 29.56 68.60 2.03 39.69 15 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 14 H -0.27 -9.77 7.11 99.48 0.71 -9.07 15 15 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 16 C -0.07 -3.62 8.13 22.90 0.19 -3.43 15 17 C -0.17 -8.06 6.06 -18.54 -0.11 -8.17 15 18 C 0.37 14.74 10.64 70.03 0.74 15.49 15 19 O -0.51 -23.66 17.14 -3.15 -0.05 -23.71 15 20 C -0.15 -6.32 6.03 -19.89 -0.12 -6.44 15 21 H 0.09 1.68 7.88 -2.39 -0.02 1.66 15 22 H 0.07 1.61 5.93 -2.39 -0.01 1.60 15 23 H 0.09 1.55 8.04 -2.39 -0.02 1.53 15 24 H 0.19 4.02 8.06 -2.92 -0.02 4.00 15 25 H 0.10 4.86 8.06 -2.91 -0.02 4.84 15 26 H 0.29 14.06 8.30 -92.70 -0.77 13.29 15 27 H 0.12 7.09 5.73 -2.91 -0.02 7.07 15 28 H 0.15 4.32 4.13 -2.91 -0.01 4.31 15 Total: -1.00 -62.95 257.81 4.91 -58.05 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.20 Total: 16.26 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 2.81 Total: -46.66 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.23 Total: -43.72 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.32 Total: 0.10 kcal Total: -62.95 4.91 -58.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396384947.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.626 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds