Wall clock time and date at job start Mon Mar 30 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38969 * 119.75691 * 2 1 4 4 C 1.37493 * 120.23494 * 180.02562 * 3 2 1 5 5 C 1.40021 * 120.34192 * 359.97438 * 4 3 2 6 6 S 1.75848 * 129.75651 * 180.30404 * 5 4 3 7 7 C 1.75196 * 92.76522 * 180.02562 * 6 5 4 8 8 C 1.39235 * 124.65033 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00035 * 179.69825 * 8 7 6 10 10 C 1.40789 * 119.99593 * 359.69344 * 8 7 6 11 11 N 1.30376 * 120.00540 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99767 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47183 * 59.99939 * 12 10 8 14 14 H 1.48497 * 109.47647 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47451 * 300.00225 * 12 10 8 16 16 C 1.39079 * 110.69690 * 359.69458 * 7 6 5 17 17 C 1.41342 * 123.28988 * 180.23133 * 16 7 6 18 18 O 1.21468 * 120.00211 * 180.02562 * 17 16 7 19 19 C 1.39911 * 119.48229 * 0.02562 * 5 4 3 20 20 C 1.36043 * 119.75370 * 180.02562 * 2 1 3 21 21 H 1.08996 * 109.46802 * 89.99717 * 1 2 3 22 22 H 1.09001 * 109.47267 * 210.00019 * 1 2 3 23 23 H 1.09005 * 109.46852 * 330.00212 * 1 2 3 24 24 H 1.07998 * 119.88281 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.82556 * 180.02562 * 4 3 2 26 26 H 0.97005 * 120.00271 * 179.97438 * 11 10 8 27 27 H 1.08000 * 119.99856 * 0.02562 * 17 16 7 28 28 H 1.07997 * 119.74051 * 359.97210 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.2064 0.0000 4 6 3.5716 1.2179 -0.0005 5 6 4.2890 0.0154 -0.0005 6 16 6.0261 -0.2577 0.0060 7 6 5.8378 -1.9995 0.0001 8 6 6.8914 -2.9097 0.0014 9 1 6.6887 -3.9705 0.0024 10 6 8.2211 -2.4471 0.0013 11 7 8.4660 -1.1665 0.0005 12 14 9.6348 -3.6682 0.0023 13 1 9.5520 -4.5224 -1.2097 14 1 10.9246 -2.9324 0.0014 15 1 9.5516 -4.5209 1.2153 16 6 4.4914 -2.3484 0.0003 17 6 4.0368 -3.6867 0.0009 18 8 2.8454 -3.9234 0.0006 19 6 3.5958 -1.1999 -0.0005 20 6 2.1821 -1.1811 -0.0005 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8901 0.5138 24 1 1.6508 2.1383 0.0004 25 1 4.1009 2.1593 -0.0001 26 1 9.3822 -0.8478 0.0008 27 1 4.7487 -4.4988 0.0016 28 1 1.6339 -2.1116 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396385007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:06 Heat of formation + Delta-G solvation = -36.719935 kcal Electronic energy + Delta-G solvation = -14768.591796 eV Core-core repulsion = 12260.113563 eV Total energy + Delta-G solvation = -2508.478234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.60825 -37.03376 -35.25889 -33.49694 -31.25323 -29.49653 -26.70496 -25.96497 -23.27962 -21.69315 -20.58359 -18.68036 -17.46541 -16.23883 -15.89821 -14.70249 -14.68548 -14.02645 -13.52784 -13.31559 -13.02230 -12.78637 -12.54119 -12.30757 -11.96232 -11.82239 -11.64067 -11.56192 -11.29272 -10.79431 -10.47366 -10.43783 -10.17307 -9.41315 -9.31771 -8.34105 -8.07013 -7.64157 -7.55183 -6.51528 -5.17059 1.98454 2.27529 2.53507 2.65576 2.71473 2.87243 3.03790 3.33352 3.60947 3.97886 4.47137 5.09157 5.58749 5.64516 5.78995 5.98944 6.07264 6.08530 6.25869 6.31079 6.51611 6.60896 6.81930 6.93930 7.13346 7.23144 7.35324 7.46821 7.51119 7.62048 7.88333 8.00400 8.10364 9.17629 9.21557 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034327 B = 0.007675 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.490545 B = 3647.456968 C = 4447.801042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.091 4.091 3 C -0.171 4.171 4 C -0.068 4.068 5 C -0.245 4.245 6 S 0.138 5.862 7 C 0.082 3.918 8 C -0.349 4.349 9 H 0.111 0.889 10 C 0.052 3.948 11 N -0.742 5.742 12 Si 0.944 3.056 13 H -0.253 1.253 14 H -0.268 1.268 15 H -0.253 1.253 16 C -0.422 4.422 17 C 0.396 3.604 18 O -0.553 6.553 19 C 0.041 3.959 20 C -0.125 4.125 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.311 0.689 27 H 0.058 0.942 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 1.904 0.002 2.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.091 4.091 5 C -0.359 4.359 6 S 0.398 5.602 7 C -0.040 4.040 8 C -0.382 4.382 9 H 0.129 0.871 10 C -0.175 4.175 11 N -0.366 5.366 12 Si 0.765 3.235 13 H -0.177 1.177 14 H -0.193 1.193 15 H -0.177 1.177 16 C -0.429 4.429 17 C 0.269 3.731 18 O -0.441 6.441 19 C 0.035 3.965 20 C -0.144 4.144 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.074 0.926 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.345 2.918 0.010 3.743 hybrid contribution -0.358 -1.142 -0.019 1.197 sum 1.987 1.776 -0.008 2.665 Atomic orbital electron populations 1.20683 0.92464 1.01637 1.01291 1.19252 0.95009 0.93349 1.01745 1.20470 0.93573 0.96470 1.08559 1.20243 0.93367 0.95104 1.00350 1.23712 1.02531 0.96329 1.13281 1.84731 0.94736 1.01139 1.79550 1.21731 0.94851 0.96050 0.91319 1.19674 0.88964 0.96159 1.33394 0.87116 1.26640 1.02137 0.96830 0.91926 1.68503 1.25553 1.15162 1.27356 0.85687 0.76980 0.79664 0.81129 1.17721 1.19267 1.17714 1.19017 0.91006 0.94967 1.37934 1.21172 0.89543 0.90214 0.72191 1.90339 1.20415 1.87828 1.45535 1.18898 0.92659 0.91086 0.93852 1.20811 0.92920 0.97489 1.03208 0.92177 0.92189 0.92504 0.87551 0.87659 0.87520 0.92563 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.99 36.00 0.36 -1.31 15 2 C -0.09 -1.88 5.83 -105.14 -0.61 -2.49 15 3 C -0.17 -3.36 9.68 -39.58 -0.38 -3.75 15 4 C -0.07 -1.44 10.07 -39.19 -0.39 -1.84 15 5 C -0.25 -5.88 6.44 -38.29 -0.25 -6.12 15 6 S 0.14 3.23 20.01 -107.50 -2.15 1.08 15 7 C 0.08 2.00 6.14 -38.90 -0.24 1.76 15 8 C -0.35 -7.76 8.93 -38.25 -0.34 -8.11 15 9 H 0.11 2.26 6.62 -52.49 -0.35 1.92 15 10 C 0.05 1.04 5.51 -17.21 -0.09 0.95 15 11 N -0.74 -15.35 10.54 55.59 0.59 -14.76 15 12 Si 0.94 14.77 29.57 -169.99 -5.03 9.75 15 13 H -0.25 -3.95 7.11 56.52 0.40 -3.55 15 14 H -0.27 -4.05 7.11 56.52 0.40 -3.65 15 15 H -0.25 -3.95 7.11 56.52 0.40 -3.55 15 16 C -0.42 -10.80 5.90 -105.45 -0.62 -11.42 15 17 C 0.40 9.72 10.98 31.91 0.35 10.07 15 18 O -0.55 -14.65 15.43 5.39 0.08 -14.56 15 19 C 0.04 1.06 6.00 -105.12 -0.63 0.43 15 20 C -0.12 -2.97 9.10 -39.17 -0.36 -3.33 15 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 22 H 0.06 0.93 8.07 -51.93 -0.42 0.51 15 23 H 0.06 0.79 8.08 -51.93 -0.42 0.37 15 24 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.11 1.95 8.06 -52.49 -0.42 1.53 15 26 H 0.31 5.63 8.29 -40.82 -0.34 5.29 15 27 H 0.06 1.24 6.82 -52.49 -0.36 0.88 15 28 H 0.13 3.08 6.27 -52.49 -0.33 2.75 15 LS Contribution 259.82 15.07 3.92 3.92 Total: -1.00 -27.39 259.82 -8.08 -35.46 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.27 Total: 4.28 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.21 Total: -25.16 kcal Atomic # 7 Polarization: -15.35 SS G_CDS: 0.59 Total: -14.76 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 14.77 SS G_CDS: -5.03 Total: 9.75 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.15 Total: 1.08 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.39 -8.08 -35.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.255 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds