Wall clock time and date at job start Mon Mar 30 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35735 * 119.86479 * 2 1 4 4 C 1.40205 * 121.99228 * 179.72170 * 3 2 1 5 5 S 1.76238 * 130.03460 * 180.22913 * 4 3 2 6 6 C 1.75449 * 91.59452 * 180.29441 * 5 4 3 7 7 C 1.32214 * 110.86509 * 359.97438 * 6 5 4 8 8 C 1.40190 * 120.82979 * 0.55008 * 4 3 2 9 9 C 1.42599 * 118.76265 * 359.74002 * 8 4 3 10 10 C 1.41597 * 120.46809 * 180.02562 * 9 8 4 11 11 O 1.21444 * 119.99781 * 354.34953 * 10 9 8 12 12 C 1.41036 * 119.86401 * 180.27156 * 2 1 3 13 13 C 1.40479 * 120.46843 * 0.02562 * 12 2 1 14 14 H 1.08007 * 119.99783 * 312.68705 * 13 12 2 15 15 C 1.40422 * 120.00403 * 132.68101 * 13 12 2 16 16 N 1.30554 * 119.99871 * 341.90650 * 15 13 12 17 17 Si 1.86797 * 120.00130 * 161.90150 * 15 13 12 18 18 H 1.48493 * 109.47198 * 60.00591 * 17 15 13 19 19 H 1.48501 * 109.47034 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47359 * 300.00125 * 17 15 13 21 21 H 1.08999 * 109.46940 * 269.72867 * 1 2 3 22 22 H 1.09006 * 109.46471 * 149.73110 * 1 2 3 23 23 H 1.09001 * 109.47063 * 29.72870 * 1 2 3 24 24 H 1.08000 * 119.00166 * 359.97438 * 3 2 1 25 25 H 1.08000 * 124.56468 * 179.97438 * 6 5 4 26 26 H 1.08004 * 122.08038 * 180.02562 * 7 6 5 27 27 H 1.07998 * 120.00551 * 174.35257 * 10 9 8 28 28 H 0.96999 * 120.00602 * 185.67076 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1830 1.1771 0.0000 4 6 3.5841 1.2292 0.0058 5 16 4.6668 2.6197 0.0124 6 6 6.0806 1.5807 0.0075 7 6 5.7285 0.3064 0.0020 8 6 4.3467 0.0529 0.0003 9 6 3.6712 -1.2029 -0.0057 10 6 4.4058 -2.4134 -0.0108 11 8 5.6156 -2.3889 -0.1137 12 6 2.2094 -1.2231 -0.0058 13 6 1.5140 -2.4437 -0.0121 14 1 0.6954 -2.6024 0.6744 15 6 1.8831 -3.4574 -0.9110 16 7 2.6079 -3.1694 -1.9580 17 14 1.3373 -5.2181 -0.6086 18 1 -0.1462 -5.2798 -0.5880 19 1 1.8543 -6.0899 -1.6939 20 1 1.8703 -5.6844 0.6966 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3632 -0.8876 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6246 2.1015 -0.0004 25 1 7.1010 1.9345 0.0088 26 1 6.4577 -0.4903 -0.0013 27 1 3.8903 -3.3584 0.0768 28 1 2.7940 -3.8517 -2.6218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396385520.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:33 Heat of formation + Delta-G solvation = -3.380682 kcal Electronic energy + Delta-G solvation = -15249.332182 eV Core-core repulsion = 12742.299647 eV Total energy + Delta-G solvation = -2507.032535 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.93362 -36.80834 -35.42422 -33.65266 -30.35088 -30.01500 -26.65426 -25.07365 -23.48478 -22.11452 -19.83179 -18.97339 -17.24443 -16.56387 -15.83703 -15.19086 -14.29277 -13.80734 -13.58994 -13.31141 -13.05738 -12.88177 -12.54662 -12.35845 -12.01200 -11.69144 -11.45333 -11.22114 -11.17863 -10.86766 -10.44301 -10.28357 -9.82866 -9.75827 -9.45589 -8.38314 -8.14888 -7.38047 -7.08865 -6.80490 -4.79080 1.37836 2.16198 2.46919 2.85490 2.88412 2.94787 2.96073 3.34971 3.68704 3.78428 4.36061 5.17518 5.55825 5.71639 5.93833 6.04723 6.11399 6.36367 6.39334 6.48085 6.62793 6.73373 6.82086 6.89058 7.01344 7.14387 7.30759 7.45421 7.62360 7.75559 8.06887 8.35549 8.46348 8.99677 9.85692 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.009218 C = 0.007262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.244991 B = 3036.666590 C = 3854.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.142 4.142 3 C -0.038 4.038 4 C -0.224 4.224 5 S 0.007 5.993 6 C -0.204 4.204 7 C -0.113 4.113 8 C 0.015 3.985 9 C -0.254 4.254 10 C 0.411 3.589 11 O -0.535 6.535 12 C 0.179 3.821 13 C -0.466 4.466 14 H 0.098 0.902 15 C 0.081 3.919 16 N -0.779 5.779 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.256 1.256 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.100 0.900 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.076 0.924 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 2.853 2.163 4.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C -0.060 4.060 4 C -0.338 4.338 5 S 0.267 5.733 6 C -0.338 4.338 7 C -0.144 4.144 8 C 0.007 3.993 9 C -0.260 4.260 10 C 0.281 3.719 11 O -0.419 6.419 12 C 0.175 3.825 13 C -0.495 4.495 14 H 0.115 0.885 15 C -0.141 4.141 16 N -0.402 5.402 17 Si 0.729 3.271 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.181 1.181 21 H 0.071 0.929 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.171 0.829 26 H 0.168 0.832 27 H 0.092 0.908 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.408 4.338 1.926 4.951 hybrid contribution -0.106 -2.142 -0.205 2.154 sum -1.515 2.196 1.721 3.175 Atomic orbital electron populations 1.20539 0.91870 1.01784 1.00686 1.19762 0.95320 0.92621 1.06744 1.19674 0.90602 0.97069 0.98671 1.22060 0.96790 0.94307 1.20684 1.83428 0.97668 1.10362 1.81844 1.24969 1.01043 0.96519 1.11255 1.20465 0.96451 0.96594 1.00877 1.18207 0.91413 0.92839 0.96832 1.20359 0.93731 0.92125 1.19791 1.22016 0.87612 0.93136 0.69175 1.90301 1.18157 1.91138 1.42295 1.18433 0.89632 0.91905 0.82541 1.19481 1.15367 0.96660 1.17961 0.88459 1.26043 0.92644 1.01157 0.94256 1.69617 1.27185 1.36861 1.06538 0.86378 0.80281 0.80590 0.79881 1.18488 1.19856 1.18056 0.92911 0.90837 0.93555 0.88143 0.82943 0.83171 0.90790 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.55 36.01 0.34 -1.29 15 2 C -0.14 -3.08 5.89 -104.45 -0.61 -3.69 15 3 C -0.04 -0.81 9.53 -39.74 -0.38 -1.19 15 4 C -0.22 -5.03 6.50 -38.11 -0.25 -5.27 15 5 S 0.01 0.13 23.29 -107.50 -2.50 -2.38 15 6 C -0.20 -3.90 11.08 28.81 0.32 -3.58 15 7 C -0.11 -2.52 9.34 -40.67 -0.38 -2.90 15 8 C 0.01 0.35 5.85 -106.64 -0.62 -0.27 15 9 C -0.25 -6.43 5.65 -103.74 -0.59 -7.01 15 10 C 0.41 10.38 9.24 32.01 0.30 10.67 15 11 O -0.53 -14.05 14.95 5.41 0.08 -13.97 15 12 C 0.18 4.30 5.34 -104.80 -0.56 3.74 15 13 C -0.47 -10.64 7.10 -37.92 -0.27 -10.91 15 14 H 0.10 2.06 7.83 -52.48 -0.41 1.65 15 15 C 0.08 1.80 3.31 -17.27 -0.06 1.74 15 16 N -0.78 -18.70 11.48 55.57 0.64 -18.06 15 17 Si 0.91 16.66 29.60 -169.99 -5.03 11.62 15 18 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 19 H -0.27 -5.03 7.11 56.52 0.40 -4.62 15 20 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.07 1.34 7.12 -51.93 -0.37 0.97 15 23 H 0.05 0.73 8.07 -51.93 -0.42 0.31 15 24 H 0.10 1.84 8.05 -52.49 -0.42 1.42 15 25 H 0.15 2.36 8.06 -52.49 -0.42 1.94 15 26 H 0.15 3.42 6.07 -52.48 -0.32 3.11 15 27 H 0.08 1.83 5.67 -52.49 -0.30 1.53 15 28 H 0.29 6.48 8.30 -40.82 -0.34 6.14 15 LS Contribution 256.33 15.07 3.86 3.86 Total: -1.00 -26.63 256.33 -7.93 -34.56 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.22 Total: 4.33 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.76 Total: -19.97 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.64 Total: -18.06 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.08 Total: -13.97 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.50 Total: -2.38 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.63 -7.93 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385520.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.179 kcal (2) G-P(sol) polarization free energy of solvation -26.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds