Wall clock time and date at job start Mon Mar 30 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35735 * 119.86479 * 2 1 4 4 C 1.40205 * 121.99228 * 179.72170 * 3 2 1 5 5 S 1.76238 * 130.03460 * 180.22913 * 4 3 2 6 6 C 1.75449 * 91.59452 * 180.29441 * 5 4 3 7 7 C 1.32214 * 110.86509 * 359.97438 * 6 5 4 8 8 C 1.40190 * 120.82979 * 0.55008 * 4 3 2 9 9 C 1.42599 * 118.76265 * 359.74002 * 8 4 3 10 10 C 1.41597 * 120.46809 * 180.02562 * 9 8 4 11 11 O 1.21444 * 119.99781 * 354.34953 * 10 9 8 12 12 C 1.41036 * 119.86401 * 180.27156 * 2 1 3 13 13 C 1.40479 * 120.46843 * 0.02562 * 12 2 1 14 14 H 1.08007 * 119.99783 * 312.68705 * 13 12 2 15 15 C 1.40422 * 120.00403 * 132.68101 * 13 12 2 16 16 N 1.30554 * 119.99871 * 341.90650 * 15 13 12 17 17 Si 1.86797 * 120.00130 * 161.90150 * 15 13 12 18 18 H 1.48493 * 109.47198 * 60.00591 * 17 15 13 19 19 H 1.48501 * 109.47034 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47359 * 300.00125 * 17 15 13 21 21 H 1.08999 * 109.46940 * 269.72867 * 1 2 3 22 22 H 1.09006 * 109.46471 * 149.73110 * 1 2 3 23 23 H 1.09001 * 109.47063 * 29.72870 * 1 2 3 24 24 H 1.08000 * 119.00166 * 359.97438 * 3 2 1 25 25 H 1.08000 * 124.56468 * 179.97438 * 6 5 4 26 26 H 1.08004 * 122.08038 * 180.02562 * 7 6 5 27 27 H 1.07998 * 120.00551 * 174.35257 * 10 9 8 28 28 H 0.96999 * 120.00602 * 185.67076 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1830 1.1771 0.0000 4 6 3.5841 1.2292 0.0058 5 16 4.6668 2.6197 0.0124 6 6 6.0806 1.5807 0.0075 7 6 5.7285 0.3064 0.0020 8 6 4.3467 0.0529 0.0003 9 6 3.6712 -1.2029 -0.0057 10 6 4.4058 -2.4134 -0.0108 11 8 5.6156 -2.3889 -0.1137 12 6 2.2094 -1.2231 -0.0058 13 6 1.5140 -2.4437 -0.0121 14 1 0.6954 -2.6024 0.6744 15 6 1.8831 -3.4574 -0.9110 16 7 2.6079 -3.1694 -1.9580 17 14 1.3373 -5.2181 -0.6086 18 1 -0.1462 -5.2798 -0.5880 19 1 1.8543 -6.0899 -1.6939 20 1 1.8703 -5.6844 0.6966 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3632 -0.8876 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6246 2.1015 -0.0004 25 1 7.1010 1.9345 0.0088 26 1 6.4577 -0.4903 -0.0013 27 1 3.8903 -3.3584 0.0768 28 1 2.7940 -3.8517 -2.6218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396385520.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:33 Heat of formation + Delta-G solvation = -16.768344 kcal Electronic energy + Delta-G solvation = -15249.912714 eV Core-core repulsion = 12742.299647 eV Total energy + Delta-G solvation = -2507.613068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67190 -38.65148 -37.09111 -35.35306 -32.05033 -31.66078 -28.33423 -26.69534 -25.26744 -23.76137 -21.55918 -20.69636 -18.98338 -18.19781 -17.56017 -16.88478 -15.98132 -15.52205 -15.24266 -15.04554 -14.69075 -14.50761 -14.23773 -13.98130 -13.64160 -13.33698 -13.01988 -12.76075 -12.70368 -12.35017 -12.06898 -11.88933 -11.45668 -11.37717 -11.12550 -10.07285 -10.03660 -9.07124 -8.79148 -8.43557 -6.56591 -0.34407 0.44901 0.89991 1.21239 1.38379 1.44953 1.53329 1.66382 1.98228 2.15026 2.63612 3.40543 4.03091 4.06998 4.27754 4.38707 4.58176 4.77640 4.83515 5.00594 5.04202 5.12554 5.15680 5.25256 5.34786 5.45271 5.65843 5.75423 5.92137 6.04223 6.32843 6.62423 6.71109 7.10753 8.16107 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.009218 C = 0.007262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.244991 B = 3036.666590 C = 3854.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.154 4.154 3 C -0.041 4.041 4 C -0.253 4.253 5 S 0.075 5.925 6 C -0.183 4.183 7 C -0.154 4.154 8 C -0.010 4.010 9 C -0.300 4.300 10 C 0.407 3.593 11 O -0.562 6.562 12 C 0.158 3.842 13 C -0.474 4.474 14 H 0.112 0.888 15 C 0.048 3.952 16 N -0.815 5.815 17 Si 0.970 3.030 18 H -0.244 1.244 19 H -0.274 1.274 20 H -0.255 1.255 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.132 0.868 25 H 0.192 0.808 26 H 0.134 0.866 27 H 0.075 0.925 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 4.141 2.513 5.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.157 4.157 3 C -0.062 4.062 4 C -0.368 4.368 5 S 0.337 5.663 6 C -0.317 4.317 7 C -0.185 4.185 8 C -0.018 4.018 9 C -0.305 4.305 10 C 0.280 3.720 11 O -0.449 6.449 12 C 0.154 3.846 13 C -0.501 4.501 14 H 0.130 0.870 15 C -0.171 4.171 16 N -0.440 5.440 17 Si 0.790 3.210 18 H -0.168 1.168 19 H -0.199 1.199 20 H -0.179 1.179 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.150 0.850 25 H 0.209 0.791 26 H 0.152 0.848 27 H 0.092 0.908 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.662 5.649 2.283 6.649 hybrid contribution 0.262 -2.383 -0.323 2.419 sum -2.399 3.266 1.960 4.502 Atomic orbital electron populations 1.20548 0.89087 1.02510 1.02112 1.20232 0.97429 0.92077 1.05974 1.20053 0.90482 0.98213 0.97470 1.22550 0.98000 0.95642 1.20566 1.83111 0.95560 1.07552 1.80110 1.25475 1.03339 0.95545 1.07305 1.20382 0.95666 0.97697 1.04726 1.18541 0.92638 0.93398 0.97249 1.20501 0.94663 0.92511 1.22866 1.22079 0.87374 0.93596 0.68997 1.90267 1.18852 1.91369 1.44394 1.18837 0.89573 0.93504 0.82686 1.19829 1.15555 0.96889 1.17875 0.87041 1.26851 0.92120 1.04710 0.93431 1.69695 1.28351 1.38290 1.07622 0.85400 0.80644 0.75454 0.79498 1.16764 1.19898 1.17915 0.90969 0.91712 0.91211 0.84974 0.79054 0.84805 0.90834 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.55 71.24 0.68 -2.18 15 2 C -0.15 -6.56 5.89 -19.76 -0.12 -6.68 15 3 C -0.04 -1.66 9.53 22.17 0.21 -1.45 15 4 C -0.25 -11.11 6.50 23.22 0.15 -10.96 15 5 S 0.08 2.64 23.29 -56.49 -1.32 1.32 15 6 C -0.18 -6.63 11.08 66.79 0.74 -5.89 15 7 C -0.15 -6.95 9.34 21.79 0.20 -6.75 15 8 C -0.01 -0.51 5.85 -21.17 -0.12 -0.63 15 9 C -0.30 -15.70 5.65 -19.30 -0.11 -15.81 15 10 C 0.41 21.61 9.24 68.65 0.63 22.25 15 11 O -0.56 -31.22 14.95 -3.54 -0.05 -31.27 15 12 C 0.16 7.70 5.34 -19.98 -0.11 7.59 15 13 C -0.47 -21.66 7.10 23.35 0.17 -21.50 15 14 H 0.11 4.63 7.83 -2.91 -0.02 4.61 15 15 C 0.05 2.13 3.31 85.41 0.28 2.41 15 16 N -0.82 -40.10 11.48 21.91 0.25 -39.85 15 17 Si 0.97 33.74 29.60 68.60 2.03 35.77 15 18 H -0.24 -7.83 7.11 99.48 0.71 -7.13 15 19 H -0.27 -9.49 7.11 99.48 0.71 -8.78 15 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.06 2.26 7.12 -2.38 -0.02 2.24 15 23 H 0.07 1.97 8.07 -2.39 -0.02 1.95 15 24 H 0.13 4.42 8.05 -2.91 -0.02 4.39 15 25 H 0.19 5.27 8.06 -2.91 -0.02 5.25 15 26 H 0.13 6.40 6.07 -2.91 -0.02 6.38 15 27 H 0.08 3.82 5.67 -2.91 -0.02 3.80 15 28 H 0.30 13.46 8.30 -92.71 -0.77 12.69 15 Total: -1.00 -58.89 256.33 4.72 -54.17 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.19 Total: 19.44 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 2.61 Total: -39.59 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.25 Total: -39.85 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.32 Total: 1.32 kcal Total: -58.89 4.72 -54.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385520.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -58.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds