Wall clock time and date at job start Mon Mar 30 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35529 * 119.60864 * 2 1 4 4 C 1.41124 * 120.17585 * 180.02562 * 3 2 1 5 5 C 1.41106 * 120.16392 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99878 * 34.27944 * 5 4 3 7 7 C 1.39897 * 119.99708 * 214.27958 * 5 4 3 8 8 N 1.30862 * 120.00412 * 5.55733 * 7 5 4 9 9 Si 1.86802 * 119.99681 * 185.56269 * 7 5 4 10 10 H 1.48493 * 109.47220 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46953 * 119.99815 * 9 7 5 12 12 H 1.48495 * 109.47400 * 239.99765 * 9 7 5 13 13 C 1.40317 * 119.66702 * 359.95202 * 4 3 2 14 14 C 1.39074 * 120.01143 * 0.02562 * 13 4 3 15 15 S 1.75807 * 130.16886 * 179.69230 * 14 13 4 16 16 C 1.69987 * 93.12921 * 179.97438 * 15 14 13 17 17 C 1.35854 * 112.07232 * 0.31815 * 16 15 14 18 18 C 1.41779 * 123.16636 * 179.75902 * 17 16 15 19 19 O 1.21394 * 120.00040 * 353.93398 * 18 17 16 20 20 C 1.39912 * 119.79361 * 0.02562 * 14 13 4 21 21 H 1.09003 * 109.46984 * 261.43624 * 1 2 3 22 22 H 1.09005 * 109.47130 * 21.43433 * 1 2 3 23 23 H 1.08992 * 109.47583 * 141.43498 * 1 2 3 24 24 H 1.07991 * 119.91214 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00715 * 179.97438 * 8 7 5 26 26 H 1.08004 * 119.99538 * 180.02562 * 13 4 3 27 27 H 1.08005 * 123.96336 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.99738 * 173.92439 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1783 0.0000 4 6 3.5878 1.1923 -0.0005 5 6 4.2847 2.4192 -0.0011 6 1 3.8796 3.2706 0.5257 7 6 5.5004 2.5328 -0.6840 8 7 5.9378 1.5368 -1.4114 9 14 6.4993 4.1062 -0.5573 10 1 5.7918 5.0724 0.3207 11 1 7.8336 3.8004 0.0183 12 1 6.6671 4.6963 -1.9096 13 6 4.2943 -0.0200 -0.0001 14 6 3.6041 -1.2274 0.0004 15 16 4.2076 -2.8786 -0.0062 16 6 2.6453 -3.5485 0.0003 17 6 1.6800 -2.5925 0.0003 18 6 0.2938 -2.8900 0.0002 19 8 -0.0803 -4.0395 -0.1109 20 6 2.2050 -1.2284 -0.0001 21 1 -0.3633 -0.1530 1.0162 22 1 -0.3634 0.9566 -0.3756 23 1 -0.3634 -0.8034 -0.6406 24 1 1.6289 2.1090 0.0004 25 1 6.7806 1.6157 -1.8852 26 1 5.3744 -0.0155 -0.0001 27 1 2.4437 -4.6095 -0.0005 28 1 -0.4293 -2.0939 0.0991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396385537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:39 Heat of formation + Delta-G solvation = -4.632145 kcal Electronic energy + Delta-G solvation = -14809.319141 eV Core-core repulsion = 12302.232338 eV Total energy + Delta-G solvation = -2507.086803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29326 -37.86313 -34.82744 -33.27119 -31.62816 -29.18839 -26.48136 -25.30079 -25.01956 -21.16494 -20.79566 -19.17128 -17.28299 -16.70880 -15.65417 -15.30531 -14.94265 -14.07556 -13.97728 -13.82822 -13.38591 -13.01958 -12.42281 -12.16491 -12.05293 -11.89275 -11.58886 -11.28410 -11.10768 -10.81075 -10.66811 -10.02432 -9.94614 -9.59899 -9.33501 -9.18699 -8.48293 -7.51022 -6.92819 -6.79026 -4.58058 1.11551 2.31995 2.34143 2.64274 2.79863 2.93928 2.98559 3.03049 3.64713 3.80407 4.42273 5.00443 5.26833 5.41355 5.68756 5.73670 5.83318 6.06771 6.18087 6.29776 6.46689 6.55910 6.78562 6.83552 7.03290 7.12595 7.45452 7.57129 7.73306 7.90803 7.91983 8.31687 8.61943 8.63919 10.03641 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.007068 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.372933 B = 3960.783777 C = 4688.702328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.044 4.044 3 C -0.172 4.172 4 C 0.120 3.880 5 C -0.450 4.450 6 H 0.084 0.916 7 C 0.070 3.930 8 N -0.795 5.795 9 Si 0.916 3.084 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.273 1.273 13 C -0.137 4.137 14 C -0.108 4.108 15 S 0.113 5.887 16 C -0.199 4.199 17 C -0.175 4.175 18 C 0.384 3.616 19 O -0.491 6.491 20 C -0.159 4.159 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.283 0.717 26 H 0.125 0.875 27 H 0.158 0.842 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 -1.175 1.801 3.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.046 4.046 3 C -0.191 4.191 4 C 0.115 3.885 5 C -0.480 4.480 6 H 0.102 0.898 7 C -0.148 4.148 8 N -0.420 5.420 9 Si 0.740 3.260 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.198 1.198 13 C -0.163 4.163 14 C -0.222 4.222 15 S 0.380 5.620 16 C -0.335 4.335 17 C -0.191 4.191 18 C 0.245 3.755 19 O -0.370 6.370 20 C -0.163 4.163 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.143 0.857 27 H 0.176 0.824 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.424 -2.540 1.576 3.311 hybrid contribution -0.730 1.290 -0.140 1.489 sum -2.154 -1.249 1.436 2.875 Atomic orbital electron populations 1.21060 0.93345 1.01910 1.01233 1.18865 0.93798 0.91465 1.00520 1.20796 0.94735 0.95581 1.07992 1.17461 0.90516 0.92813 0.87751 1.19599 1.03408 0.97091 1.27927 0.89793 1.25941 0.97139 0.98371 0.93323 1.69781 1.19379 1.31523 1.21335 0.86120 0.79583 0.81181 0.79075 1.18330 1.19670 1.19806 1.20699 0.99492 0.88363 1.07701 1.22414 0.95932 0.96281 1.07605 1.82548 1.05266 0.98370 1.75823 1.25158 0.98186 1.03168 1.07036 1.19772 0.96121 0.92878 1.10350 1.22914 0.90758 0.91247 0.70547 1.90469 1.83661 1.25340 1.37553 1.18258 0.91609 0.90808 1.15633 0.91854 0.91938 0.91873 0.87526 0.90583 0.85721 0.82433 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.48 36.01 0.31 -1.53 15 2 C -0.04 -0.89 5.89 -104.43 -0.61 -1.51 15 3 C -0.17 -3.76 9.29 -39.45 -0.37 -4.13 15 4 C 0.12 2.95 5.50 -106.93 -0.59 2.36 15 5 C -0.45 -10.89 9.02 -37.87 -0.34 -11.23 15 6 H 0.08 1.92 7.85 -52.49 -0.41 1.51 15 7 C 0.07 1.63 5.30 -17.34 -0.09 1.54 15 8 N -0.79 -19.39 10.95 55.54 0.61 -18.79 15 9 Si 0.92 17.46 29.56 -169.99 -5.03 12.44 15 10 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 11 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 13 C -0.14 -3.36 8.65 -38.49 -0.33 -3.70 15 14 C -0.11 -2.45 6.43 -38.64 -0.25 -2.70 15 15 S 0.11 2.16 22.97 -107.50 -2.47 -0.31 15 16 C -0.20 -3.75 10.34 29.88 0.31 -3.44 15 17 C -0.17 -3.44 5.83 -106.22 -0.62 -4.06 15 18 C 0.38 6.79 10.42 32.08 0.33 7.13 15 19 O -0.49 -9.68 17.38 5.46 0.09 -9.59 15 20 C -0.16 -3.41 6.01 -104.93 -0.63 -4.04 15 21 H 0.06 0.87 8.09 -51.93 -0.42 0.45 15 22 H 0.06 0.87 7.97 -51.93 -0.41 0.45 15 23 H 0.06 0.90 5.43 -51.93 -0.28 0.62 15 24 H 0.11 2.12 8.00 -52.49 -0.42 1.70 15 25 H 0.28 6.30 8.30 -40.82 -0.34 5.96 15 26 H 0.13 3.18 6.44 -52.48 -0.34 2.85 15 27 H 0.16 2.69 7.92 -52.48 -0.42 2.27 15 28 H 0.11 1.53 4.43 -52.49 -0.23 1.30 15 LS Contribution 257.74 15.07 3.88 3.88 Total: -1.00 -26.67 257.74 -7.86 -34.53 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -2.07 Total: 3.14 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -2.89 Total: -25.31 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.61 Total: -18.79 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.47 Total: -0.31 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.67 -7.86 -34.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.902 kcal (2) G-P(sol) polarization free energy of solvation -26.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds