Wall clock time and date at job start Mon Mar 30 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35529 * 119.60864 * 2 1 4 4 C 1.41124 * 120.17585 * 180.02562 * 3 2 1 5 5 C 1.41106 * 120.16392 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99878 * 34.27944 * 5 4 3 7 7 C 1.39897 * 119.99708 * 214.27958 * 5 4 3 8 8 N 1.30862 * 120.00412 * 5.55733 * 7 5 4 9 9 Si 1.86802 * 119.99681 * 185.56269 * 7 5 4 10 10 H 1.48493 * 109.47220 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46953 * 119.99815 * 9 7 5 12 12 H 1.48495 * 109.47400 * 239.99765 * 9 7 5 13 13 C 1.40317 * 119.66702 * 359.95202 * 4 3 2 14 14 C 1.39074 * 120.01143 * 0.02562 * 13 4 3 15 15 S 1.75807 * 130.16886 * 179.69230 * 14 13 4 16 16 C 1.69987 * 93.12921 * 179.97438 * 15 14 13 17 17 C 1.35854 * 112.07232 * 0.31815 * 16 15 14 18 18 C 1.41779 * 123.16636 * 179.75902 * 17 16 15 19 19 O 1.21394 * 120.00040 * 353.93398 * 18 17 16 20 20 C 1.39912 * 119.79361 * 0.02562 * 14 13 4 21 21 H 1.09003 * 109.46984 * 261.43624 * 1 2 3 22 22 H 1.09005 * 109.47130 * 21.43433 * 1 2 3 23 23 H 1.08992 * 109.47583 * 141.43498 * 1 2 3 24 24 H 1.07991 * 119.91214 * 0.02562 * 3 2 1 25 25 H 0.96998 * 120.00715 * 179.97438 * 8 7 5 26 26 H 1.08004 * 119.99538 * 180.02562 * 13 4 3 27 27 H 1.08005 * 123.96336 * 180.02562 * 16 15 14 28 28 H 1.08001 * 119.99738 * 173.92439 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1783 0.0000 4 6 3.5878 1.1923 -0.0005 5 6 4.2847 2.4192 -0.0011 6 1 3.8796 3.2706 0.5257 7 6 5.5004 2.5328 -0.6840 8 7 5.9378 1.5368 -1.4114 9 14 6.4993 4.1062 -0.5573 10 1 5.7918 5.0724 0.3207 11 1 7.8336 3.8004 0.0183 12 1 6.6671 4.6963 -1.9096 13 6 4.2943 -0.0200 -0.0001 14 6 3.6041 -1.2274 0.0004 15 16 4.2076 -2.8786 -0.0062 16 6 2.6453 -3.5485 0.0003 17 6 1.6800 -2.5925 0.0003 18 6 0.2938 -2.8900 0.0002 19 8 -0.0803 -4.0395 -0.1109 20 6 2.2050 -1.2284 -0.0001 21 1 -0.3633 -0.1530 1.0162 22 1 -0.3634 0.9566 -0.3756 23 1 -0.3634 -0.8034 -0.6406 24 1 1.6289 2.1090 0.0004 25 1 6.7806 1.6157 -1.8852 26 1 5.3744 -0.0155 -0.0001 27 1 2.4437 -4.6095 -0.0005 28 1 -0.4293 -2.0939 0.0991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396385537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:39 Heat of formation + Delta-G solvation = -17.950429 kcal Electronic energy + Delta-G solvation = -14809.896665 eV Core-core repulsion = 12302.232338 eV Total energy + Delta-G solvation = -2507.664327 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82833 -39.44120 -36.48904 -34.88082 -33.21047 -30.87996 -28.01978 -26.85571 -26.61702 -22.82392 -22.45046 -20.66813 -18.99464 -18.31362 -17.24618 -16.85834 -16.51133 -15.60927 -15.49453 -15.45071 -14.96612 -14.43391 -13.97601 -13.81175 -13.50945 -13.26563 -13.21926 -12.84405 -12.71083 -12.40855 -12.17050 -11.67176 -11.56684 -11.26191 -11.01008 -10.63109 -10.09647 -9.22241 -8.64043 -8.42324 -6.39838 -0.38635 0.65248 0.73566 0.96580 1.18986 1.41067 1.43532 1.55413 2.10434 2.21433 2.72621 3.51787 3.68166 3.87163 4.18763 4.37791 4.45784 4.65760 4.85695 4.92647 4.97313 5.02756 5.12673 5.24046 5.30312 5.43241 5.78071 5.85359 6.03156 6.17506 6.49873 6.55472 6.85908 6.88858 8.34081 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.007068 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.372933 B = 3960.783777 C = 4688.702328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 C -0.187 4.187 4 C 0.092 3.908 5 C -0.483 4.483 6 H 0.087 0.913 7 C 0.030 3.970 8 N -0.833 5.833 9 Si 0.986 3.014 10 H -0.253 1.253 11 H -0.269 1.269 12 H -0.269 1.269 13 C -0.164 4.164 14 C -0.139 4.139 15 S 0.146 5.854 16 C -0.192 4.192 17 C -0.189 4.189 18 C 0.393 3.607 19 O -0.510 6.510 20 C -0.164 4.164 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.287 0.713 26 H 0.102 0.898 27 H 0.180 0.820 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -1.480 2.018 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.045 4.045 3 C -0.206 4.206 4 C 0.087 3.913 5 C -0.514 4.514 6 H 0.105 0.895 7 C -0.184 4.184 8 N -0.460 5.460 9 Si 0.807 3.193 10 H -0.177 1.177 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.189 4.189 14 C -0.253 4.253 15 S 0.413 5.587 16 C -0.329 4.329 17 C -0.205 4.205 18 C 0.256 3.744 19 O -0.390 6.390 20 C -0.169 4.169 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.140 0.860 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.198 0.802 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.016 -2.847 1.800 4.521 hybrid contribution -0.306 1.191 -0.191 1.244 sum -3.322 -1.656 1.609 4.045 Atomic orbital electron populations 1.21148 0.89412 1.03627 1.03216 1.19378 0.96678 0.90321 0.98143 1.21026 0.93935 0.97136 1.08483 1.17832 0.92091 0.93035 0.88362 1.19855 1.04765 0.97414 1.29357 0.89505 1.26768 0.97739 1.01401 0.92460 1.69866 1.20057 1.33541 1.22534 0.85077 0.77842 0.77247 0.79100 1.17670 1.19382 1.19360 1.20543 0.98541 0.89631 1.10234 1.22770 0.97178 0.97597 1.07778 1.82418 1.05277 0.95884 1.75076 1.25556 0.97912 1.04314 1.05132 1.19981 0.97611 0.91873 1.11075 1.23258 0.90164 0.91660 0.69343 1.90476 1.83611 1.26378 1.38488 1.18670 0.91284 0.92299 1.14600 0.89396 0.90211 0.90331 0.85972 0.90247 0.88046 0.80225 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 8.48 71.24 0.60 -2.57 15 2 C -0.04 -1.67 5.89 -19.74 -0.12 -1.79 15 3 C -0.19 -8.16 9.29 22.35 0.21 -7.95 15 4 C 0.09 4.66 5.50 -21.36 -0.12 4.55 15 5 C -0.48 -24.26 9.02 23.38 0.21 -24.04 15 6 H 0.09 4.10 7.85 -2.91 -0.02 4.08 15 7 C 0.03 1.45 5.30 85.24 0.45 1.90 15 8 N -0.83 -42.43 10.95 21.82 0.24 -42.19 15 9 Si 0.99 36.48 29.56 68.60 2.03 38.51 15 10 H -0.25 -8.99 7.11 99.48 0.71 -8.28 15 11 H -0.27 -9.71 7.11 99.48 0.71 -9.00 15 12 H -0.27 -9.65 7.11 99.48 0.71 -8.95 15 13 C -0.16 -8.39 8.65 22.98 0.20 -8.19 15 14 C -0.14 -6.37 6.43 22.88 0.15 -6.23 15 15 S 0.15 5.48 22.97 -56.49 -1.30 4.18 15 16 C -0.19 -6.81 10.34 67.27 0.70 -6.11 15 17 C -0.19 -6.97 5.83 -20.90 -0.12 -7.10 15 18 C 0.39 12.51 10.42 68.70 0.72 13.23 15 19 O -0.51 -18.40 17.38 -3.38 -0.06 -18.46 15 20 C -0.16 -6.85 6.01 -20.06 -0.12 -6.97 15 21 H 0.09 2.00 8.09 -2.39 -0.02 1.98 15 22 H 0.08 1.91 7.97 -2.38 -0.02 1.89 15 23 H 0.08 1.88 5.43 -2.39 -0.01 1.87 15 24 H 0.12 4.79 8.00 -2.92 -0.02 4.77 15 25 H 0.29 13.30 8.30 -92.71 -0.77 12.54 15 26 H 0.10 5.53 6.44 -2.91 -0.02 5.51 15 27 H 0.18 5.56 7.92 -2.91 -0.02 5.54 15 28 H 0.14 3.47 4.43 -2.91 -0.01 3.46 15 Total: -1.00 -58.71 257.74 4.87 -53.84 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.20 Total: 15.40 kcal Atomic # 6 Polarization: -54.03 SS G_CDS: 2.76 Total: -51.28 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.24 Total: -42.19 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.06 Total: -18.46 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.30 Total: 4.18 kcal Total: -58.71 4.87 -53.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396385537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.892 kcal (2) G-P(sol) polarization free energy of solvation -58.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds